Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr4g061710 Medicago truncatula HOM05D000445 ORTHO05D000314 4.7e-100 367.9 184 100.0
FAN08G2610 Fragaria x ananassa HOM05D000445 ORTHO05D000314 1.2e-10 70.9 60 63.3
Glyma.16G065300 Glycine max HOM05D000445 ORTHO05D000314 1.7e-09 67.0 60 60.0
arahy.Tifrunner.gnm1.ann1.SV0IPA Arachis hypogaea HOM05D000445 ORTHO05D000314 3.8e-09 65.9 68 54.4
arahy.Tifrunner.gnm1.ann1.U896IL Arachis hypogaea HOM05D000445 ORTHO05D000314 3.8e-09 65.9 68 54.4
arahy.Tifrunner.gnm1.ann1.Z1U5RE Arachis hypogaea HOM05D000445 ORTHO05D000314 3.8e-09 65.9 68 54.4
Lj4g0020232 Lotus japonicus HOM05D000445 ORTHO05D000314 8.5e-09 64.7 68 52.9
LjContig00318g0022366 Lotus japonicus HOM05D000445 ORTHO05D000314 8.5e-09 64.7 68 52.9
LjContig00318g0026726 Lotus japonicus HOM05D000445 ORTHO05D000314 8.5e-09 64.7 68 52.9
LjContig00319g0026737 Lotus japonicus HOM05D000445 ORTHO05D000314 8.5e-09 64.7 68 52.9
Lalb_Chr01g0014981 Lupinus albus HOM05D000445 ORTHO05D000314 8.5e-09 64.7 68 52.9
Lalb_Chr07g0191931 Lupinus albus HOM05D000445 ORTHO05D000314 8.5e-09 64.7 68 52.9
Lalb_Chr12g0206621 Lupinus albus HOM05D000445 ORTHO05D000314 8.5e-09 64.7 68 52.9
Lalb_Chr13g0292661 Lupinus albus HOM05D000445 ORTHO05D000314 8.5e-09 64.7 68 52.9
PGR111G0085 Punica granatum HOM05D000445 ORTHO05D000314 8.5e-09 64.7 60 60.0
PGR111G0100 Punica granatum HOM05D000445 ORTHO05D000314 8.5e-09 64.7 60 60.0
VMungo0942G0001 Vigna mungo HOM05D000445 ORTHO05D000314 1.1e-08 64.3 68 51.5
VMungo0976G0001 Vigna mungo HOM05D000445 ORTHO05D000314 1.1e-08 64.3 68 51.5
Gohir.D01G101865 Gossypium hirsutum HOM05D000445 ORTHO05D000314 1.5e-08 63.9 68 52.9
RcHm_v2.0_CPg0501801 Rosa chinensis HOM05D000445 ORTHO05D000314 1.9e-08 63.5 68 51.5
RcHm_v2.0_CPg0502611 Rosa chinensis HOM05D000445 ORTHO05D000314 1.9e-08 63.5 68 51.5
MELO3C027250.2 Cucumis melo HOM05D000445 ORTHO05D000314 2.5e-08 63.2 60 60.0
Potri.013G143400 Populus trichocarpa HOM05D000445 ORTHO05D000314 2.5e-08 63.2 68 52.9
SabraPtG0004600 Salix brachista HOM05D000445 ORTHO05D000314 2.5e-08 63.2 68 52.9
SabraPtG0006900 Salix brachista HOM05D000445 ORTHO05D000314 2.5e-08 63.2 68 52.9
HanXRQChr13g0418951 Helianthus annuus HOM05D000445 ORTHO05D000314 4.2e-08 62.4 102 38.2
HanXRQChr00c0585g0576211 Helianthus annuus HOM05D000445 ORTHO05D000314 1.6e-07 60.5 115 34.8
Aqoxy169s001 Aquilegia oxysepala HOM05D000445 ORTHO05D000314 2.1e-07 60.1 60 56.7
Aqoxy3G01863 Aquilegia oxysepala HOM05D000445 ORTHO05D000314 2.1e-07 60.1 60 56.7
ATR0258G003 Amborella trichopoda HOM05D000445 ORTHO05D000314 2.7e-07 59.7 60 56.7
ATCG00860 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 3.6e-07 59.3 68 47.1
ATCG01280 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 3.6e-07 59.3 68 47.1
CARHR282560 Cardamine hirsuta HOM05D000445 ORTHO05D000314 3.6e-07 59.3 68 47.1
Cfa015164 Carpinus fangiana HOM05D000445 ORTHO05D000314 3.6e-07 59.3 68 48.5
Dinv09726 Davidia involucrata HOM05D000445 ORTHO05D000314 3.6e-07 59.3 68 50.0
Nn031s41601 Nelumbo nucifera HOM05D000445 ORTHO05D000314 3.6e-07 59.3 68 50.0
Nn233s45563 Nelumbo nucifera HOM05D000445 ORTHO05D000314 3.6e-07 59.3 68 50.0
Nn269s46007 Nelumbo nucifera HOM05D000445 ORTHO05D000314 3.6e-07 59.3 68 50.0
PSO548G0004 Papaver somniferum HOM05D000445 ORTHO05D000314 3.6e-07 59.3 68 48.5
PSO548G0115 Papaver somniferum HOM05D000445 ORTHO05D000314 3.6e-07 59.3 68 48.5
unitig_91.g26489 Utricularia gibba HOM05D000445 ORTHO05D000314 3.6e-07 59.3 68 50.0
unitig_91.g26516 Utricularia gibba HOM05D000445 ORTHO05D000314 3.6e-07 59.3 68 50.0
unitig_91.g26530 Utricularia gibba HOM05D000445 ORTHO05D000314 3.6e-07 59.3 68 50.0
CAN.G1875.2 Capsicum annuum HOM05D000445 ORTHO05D000314 4.7e-07 58.9 68 50.0
CAN.G745.36 Capsicum annuum HOM05D000445 ORTHO05D000314 4.7e-07 58.9 68 50.0
LjContig00489g0008652 Lotus japonicus HOM05D000445 ORTHO05D000314 4.7e-07 58.9 68 50.0
Peaxi162Scf00058g00822 Petunia axillaris HOM05D000445 ORTHO05D000314 4.7e-07 58.9 68 50.0
Ah.10g027230 Amaranthus hybridus HOM05D000445 ORTHO05D000314 8.0e-07 58.2 60 56.7
Ah.10g027290 Amaranthus hybridus HOM05D000445 ORTHO05D000314 8.0e-07 58.2 60 56.7
Ah.10g027420 Amaranthus hybridus HOM05D000445 ORTHO05D000314 8.0e-07 58.2 60 56.7
Ah.10g027670 Amaranthus hybridus HOM05D000445 ORTHO05D000314 8.0e-07 58.2 60 56.7
Ah.10g027730 Amaranthus hybridus HOM05D000445 ORTHO05D000314 8.0e-07 58.2 60 56.7
Ah.10g028850 Amaranthus hybridus HOM05D000445 ORTHO05D000314 8.0e-07 58.2 60 56.7
BNapus_Darmor_BZH_scaffold_287p00320 Brassica napus HOM05D000445 ORTHO05D000314 1.0e-06 57.8 68 47.1
C06p21350 Brassica napus HOM05D000445 ORTHO05D000314 1.0e-06 57.8 68 47.1
C06p23170 Brassica napus HOM05D000445 ORTHO05D000314 1.0e-06 57.8 68 47.1
C09p24760 Brassica napus HOM05D000445 ORTHO05D000314 1.0e-06 57.8 68 47.1
BolSC29t60492H Brassica oleracea HOM05D000445 ORTHO05D000314 1.0e-06 57.8 68 47.1
BolSC47t61071H Brassica oleracea HOM05D000445 ORTHO05D000314 1.0e-06 57.8 68 47.1
BolSC49t61212H Brassica oleracea HOM05D000445 ORTHO05D000314 1.0e-06 57.8 68 47.1
BraSC25t45894Z Brassica rapa HOM05D000445 ORTHO05D000314 1.0e-06 57.8 68 47.1
AUR62030850 Chenopodium quinoa HOM05D000445 ORTHO05D000314 1.0e-06 57.8 68 50.0
DCAR_031999 Daucus carota HOM05D000445 ORTHO05D000314 1.0e-06 57.8 68 48.5
DCAR_032529 Daucus carota HOM05D000445 ORTHO05D000314 1.0e-06 57.8 68 48.5
DCAR_032547 Daucus carota HOM05D000445 ORTHO05D000314 1.0e-06 57.8 68 48.5
ECA074G0010 Erigeron canadensis HOM05D000445 ORTHO05D000314 1.4e-06 57.4 68 48.5
ECA169G0002 Erigeron canadensis HOM05D000445 ORTHO05D000314 1.4e-06 57.4 68 48.5
HanXRQChr00c0349g0573991 Helianthus annuus HOM05D000445 ORTHO05D000314 1.4e-06 57.4 68 48.5
HanXRQChr00c0451g0574821 Helianthus annuus HOM05D000445 ORTHO05D000314 1.4e-06 57.4 68 48.5
HanXRQChr00c0634g0576591 Helianthus annuus HOM05D000445 ORTHO05D000314 1.4e-06 57.4 68 48.5
HanXRQChr01g0020161 Helianthus annuus HOM05D000445 ORTHO05D000314 1.4e-06 57.4 68 48.5
HanXRQChr05g0152341 Helianthus annuus HOM05D000445 ORTHO05D000314 1.4e-06 57.4 68 48.5
HanXRQChr05g0152501 Helianthus annuus HOM05D000445 ORTHO05D000314 1.4e-06 57.4 68 48.5
HanXRQChr10g0284471 Helianthus annuus HOM05D000445 ORTHO05D000314 1.4e-06 57.4 68 48.5
HanXRQChr11g0321171 Helianthus annuus HOM05D000445 ORTHO05D000314 1.4e-06 57.4 68 48.5
HanXRQChr11g0327091 Helianthus annuus HOM05D000445 ORTHO05D000314 1.4e-06 57.4 68 48.5
HanXRQChr11g0333801 Helianthus annuus HOM05D000445 ORTHO05D000314 1.4e-06 57.4 68 48.5
HanXRQChr12g0369911 Helianthus annuus HOM05D000445 ORTHO05D000314 1.4e-06 57.4 68 48.5
HanXRQChr13g0416591 Helianthus annuus HOM05D000445 ORTHO05D000314 1.4e-06 57.4 68 48.5
HanXRQChr15g0474951 Helianthus annuus HOM05D000445 ORTHO05D000314 1.4e-06 57.4 68 48.5
HanXRQChr17g0569651 Helianthus annuus HOM05D000445 ORTHO05D000314 1.4e-06 57.4 68 48.5
HanXRQCPg0580251 Helianthus annuus HOM05D000445 ORTHO05D000314 1.4e-06 57.4 68 48.5
HanXRQCPg0580471 Helianthus annuus HOM05D000445 ORTHO05D000314 1.4e-06 57.4 68 48.5
Lsat_1_v5_gn_0_15580 Lactuca sativa HOM05D000445 ORTHO05D000314 1.4e-06 57.4 68 48.5
Lsat_1_v5_gn_3_104600 Lactuca sativa HOM05D000445 ORTHO05D000314 1.4e-06 57.4 68 48.5
Lsat_1_v5_gn_4_147941 Lactuca sativa HOM05D000445 ORTHO05D000314 1.4e-06 57.4 68 48.5
Lsat_1_v5_gn_7_920 Lactuca sativa HOM05D000445 ORTHO05D000314 1.4e-06 57.4 68 48.5
Lsat_1_v5_gn_8_26500 Lactuca sativa HOM05D000445 ORTHO05D000314 1.4e-06 57.4 68 48.5
Lsat_1_v5_gn_9_18681 Lactuca sativa HOM05D000445 ORTHO05D000314 1.4e-06 57.4 68 48.5
AUR62032991 Chenopodium quinoa HOM05D000445 ORTHO05D000314 2.3e-06 56.6 68 48.5
Peaxi162Scf00163g00089 Petunia axillaris HOM05D000445 ORTHO05D000314 2.3e-06 56.6 68 48.5
Solyc00g500037.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.3e-06 56.6 68 48.5
Solyc00g500046.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.3e-06 56.6 68 48.5
Solyc00g500081.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.3e-06 56.6 68 48.5
Solyc00g500128.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.3e-06 56.6 68 48.5
Solyc00g500198.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.3e-06 56.6 68 48.5
Solyc00g500327.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.3e-06 56.6 68 48.5
Sopen10g008920 Solanum pennellii HOM05D000445 ORTHO05D000314 2.3e-06 56.6 68 48.5
PGSC0003DMG400015064 Solanum tuberosum HOM05D000445 ORTHO05D000314 2.3e-06 56.6 68 48.5
PGSC0003DMG400020533 Solanum tuberosum HOM05D000445 ORTHO05D000314 2.3e-06 56.6 68 48.5
PGSC0003DMG400046719 Solanum tuberosum HOM05D000445 ORTHO05D000314 2.3e-06 56.6 68 48.5
PGSC0003DMG402024143 Solanum tuberosum HOM05D000445 ORTHO05D000314 2.3e-06 56.6 68 48.5
CAN.G547.16 Capsicum annuum HOM05D000445 ORTHO05D000314 3.0e-06 56.2 68 48.5
CsaV3_UNG209000 Cucumis sativus L. HOM05D000445 ORTHO05D000314 3.0e-06 56.2 59 55.9
Ah.10g029020 Amaranthus hybridus HOM05D000445 ORTHO05D000314 5.2e-06 55.5 60 53.3
Gorai.002G166000 Gossypium raimondii HOM05D000445 ORTHO05D000314 6.7e-06 55.1 60 51.7
Hma1.2p1_0192F.1_g083680 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 6.7e-06 55.1 68 48.5
Hma1.2p1_0192F.1_g083690 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 6.7e-06 55.1 68 48.5
Hma1.2p1_1244F.1_g270040 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 6.7e-06 55.1 68 48.5
Hma1.2p1_4210F.1_g338452 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 6.7e-06 55.1 68 48.5
Nitab4.5_0011099g0040 Nicotiana tabacum HOM05D000445 ORTHO05D036881 6.7e-06 55.1 63 49.2


User provided reference genes

Program Settings