Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr4g060620 Medicago truncatula HOM05D007887 ORTHO05D009725 1.7e-45 185.7 95 100.0
TPR.G36408 Trifolium pratense HOM05D007887 ORTHO05D009725 2.4e-31 138.7 95 81.1
Psat7g222640 Pisum sativum HOM05D007887 ORTHO05D009725 2.6e-30 135.2 101 77.2
Glyma.11G153796 Glycine max HOM05D007887 ORTHO05D009725 6.5e-21 104.0 105 61.9
Glyma.12G071500 Glycine max HOM05D007887 ORTHO05D009725 7.2e-20 100.5 97 64.9
Lalb_Chr03g0027141 Lupinus albus HOM05D007887 ORTHO05D009725 5.2e-18 94.4 101 60.4
Glyma.13G328200 Glycine max HOM05D007887 ORTHO05D009725 5.7e-17 90.9 96 56.2
Lj3g0011826 Lotus japonicus HOM05D007887 ORTHO05D009725 4.8e-16 87.8 97 58.8
Lj3g0000190 Lotus japonicus HOM05D007887 ORTHO05D009725 1.8e-15 85.9 109 58.7
Lalb_Chr19g0137421 Lupinus albus HOM05D007887 ORTHO05D009725 4.1e-15 84.7 98 60.2
arahy.Tifrunner.gnm1.ann1.5EA918 Arachis hypogaea HOM05D007887 ORTHO05D009725 5.4e-15 84.3 62 72.6
arahy.Tifrunner.gnm1.ann1.VU6S4B Arachis hypogaea HOM05D007887 ORTHO05D009725 7.0e-15 84.0 62 72.6
CSS0010599 Camellia sinensis var. sinensis HOM05D007887 ORTHO05D009725 1.2e-14 83.2 100 51.0
arahy.Tifrunner.gnm1.ann1.ZKT7Q5 Arachis hypogaea HOM05D007887 ORTHO05D009725 2.0e-14 82.4 62 72.6
CSS0013187 Camellia sinensis var. sinensis HOM05D007887 ORTHO05D009725 2.0e-14 82.4 100 51.0
arahy.Tifrunner.gnm1.ann1.QG78WL Arachis hypogaea HOM05D007887 ORTHO05D009725 5.9e-14 80.9 62 71.0
Phvul.011G072900 Phaseolus vulgaris HOM05D007887 ORTHO05D009725 7.7e-14 80.5 101 51.5
Prupe.6G095800 Prunus persica HOM05D007887 ORTHO05D009725 2.3e-13 79.0 101 51.5
MD11G1131400 Malus domestica HOM05D007887 ORTHO05D009725 3.8e-13 78.2 103 53.4
FAN25G1511 Fragaria x ananassa HOM05D007887 ORTHO05D009725 8.6e-13 77.0 102 51.0
Cfa011356 Carpinus fangiana HOM05D007887 ORTHO05D009725 1.1e-12 76.6 102 48.0
RcHm_v2.0_Chr5g0060411 Rosa chinensis HOM05D007887 ORTHO05D009725 1.5e-12 76.3 101 51.5
CiPaw.13G108000 Carya illinoinensis HOM05D007887 ORTHO05D009725 4.2e-12 74.7 101 48.5
FvH4_3g33040 Fragaria vesca HOM05D007887 ORTHO05D009725 4.2e-12 74.7 102 50.0
FAN16G3357 Fragaria x ananassa HOM05D007887 ORTHO05D009725 4.2e-12 74.7 102 49.0
Manes.11G141900 Manihot esculenta HOM05D007887 ORTHO05D009725 9.5e-12 73.6 100 48.0
Ca_01431_v3 Cicer arietinum L. HOM05D007887 ORTHO05D009725 1.6e-11 72.8 94 54.3
Actinidia24082 Actinidia chinensis HOM05D007887 ORTHO05D009725 2.8e-11 72.0 97 46.4
Haze_23901 Corylus avellana HOM05D007887 ORTHO05D009725 2.8e-11 72.0 100 46.0
FAN11G2401 Fragaria x ananassa HOM05D007887 ORTHO05D009725 3.6e-11 71.6 99 47.5
MD03G1112500 Malus domestica HOM05D007887 ORTHO05D009725 6.1e-11 70.9 101 48.5
Manes.04G024800 Manihot esculenta HOM05D007887 ORTHO05D009725 1.0e-10 70.1 101 47.5
arahy.Tifrunner.gnm1.ann1.N776CK Arachis hypogaea HOM05D007887 ORTHO05D009725 1.8e-10 69.3 61 67.2
PSO339G0915 Papaver somniferum HOM05D007887 ORTHO05D009725 1.8e-10 69.3 102 47.1
Thecc.09G259300 Theobroma cacao HOM05D007887 ORTHO05D009725 1.8e-10 69.3 101 48.5
TAR633G0435 Trochodendron aralioides HOM05D007887 ORTHO05D009725 1.8e-10 69.3 74 51.4
Cc01_g11470 Coffea canephora HOM05D007887 ORTHO05D009725 2.0e-09 65.9 116 39.7
Lalb_Chr22g0350191 Lupinus albus HOM05D007887 ORTHO05D009725 2.0e-09 65.9 96 50.0
CARHR274070 Cardamine hirsuta HOM05D007887 ORTHO05D009725 7.5e-09 63.9 89 42.7
C03p12840 Brassica napus HOM05D007887 ORTHO05D009725 1.3e-08 63.2 94 40.4
PGR119G2346 Punica granatum HOM05D007887 ORTHO05D009725 1.3e-08 63.2 45 68.9
BraA02t05730Z Brassica rapa HOM05D007887 ORTHO05D009725 1.7e-08 62.8 100 40.0
CANSAT54G2812 Cannabis sativa HOM05D007887 ORTHO05D009725 1.7e-08 62.8 97 40.2
AT5G60400 Arabidopsis thaliana HOM05D007887 ORTHO05D009725 2.2e-08 62.4 89 40.4
Hma1.2p1_0071F.1_g038090 Hydrangea macrophylla HOM05D007887 ORTHO05D009725 2.8e-08 62.0 88 45.5
C02p11720 Brassica napus HOM05D007887 ORTHO05D009725 3.7e-08 61.6 100 40.0
BolC3t13748H Brassica oleracea HOM05D007887 ORTHO05D009725 3.7e-08 61.6 94 39.4
BcaC03g13976 Brassica carinata HOM05D007887 ORTHO05D009725 4.9e-08 61.2 100 39.0
AL8G37010 Arabidopsis lyrata HOM05D007887 ORTHO05D009725 6.3e-08 60.8 92 41.3
Sp6g21990 Schrenkiella parvula HOM05D007887 ORTHO05D009725 6.3e-08 60.8 100 39.0
BolC2t07269H Brassica oleracea HOM05D007887 ORTHO05D009725 8.3e-08 60.5 100 39.0
BraA03t10429Z Brassica rapa HOM05D007887 ORTHO05D009725 8.3e-08 60.5 92 39.1
Aqoxy1G00528 Aquilegia oxysepala HOM05D007887 ORTHO05D009725 1.1e-07 60.1 102 42.2
Aa31LG1G12450 Aethionema arabicum HOM05D007887 ORTHO05D009725 1.8e-07 59.3 92 43.5
BolC9t58177H Brassica oleracea HOM05D007887 ORTHO05D009725 1.8e-07 59.3 99 37.4
BcaB05g22638 Brassica carinata HOM05D007887 ORTHO05D009725 2.4e-07 58.9 101 40.6
BcaB08g36339 Brassica carinata HOM05D007887 ORTHO05D009725 2.4e-07 58.9 99 38.4
Gohir.A13G220700 Gossypium hirsutum HOM05D037992 ORTHO05D009725 2.4e-07 58.9 97 43.3
BcaB01g04657 Brassica carinata HOM05D007887 ORTHO05D009725 3.1e-07 58.5 95 37.9
A03p11140 Brassica napus HOM05D007887 ORTHO05D009725 3.1e-07 58.5 96 37.5
Eucgr.J00947 Eucalyptus grandis HOM05D007887 ORTHO05D009725 3.1e-07 58.5 45 60.0
BolC2t07271H Brassica oleracea HOM05D007887 ORTHO05D009725 4.1e-07 58.2 95 37.9
GSVIVG01025148001 Vitis vinifera HOM05D007887 ORTHO05D009725 4.1e-07 58.2 100 43.0
Thhalv10015113m.g Eutrema salsugineum HOM05D007887 ORTHO05D009725 5.4e-07 57.8 94 35.1
BcaC04g19700 Brassica carinata HOM05D007887 ORTHO05D009725 9.2e-07 57.0 99 37.4
A10p17620 Brassica napus HOM05D007887 ORTHO05D009725 9.2e-07 57.0 99 37.4
C09p53030 Brassica napus HOM05D007887 ORTHO05D009725 9.2e-07 57.0 99 37.4
BraA10t43842Z Brassica rapa HOM05D007887 ORTHO05D009725 9.2e-07 57.0 99 37.4
BraA02t05732Z Brassica rapa HOM05D007887 ORTHO05D009725 1.6e-06 56.2 102 38.2
TPR.G11627 Trifolium pratense HOM05D007887 ORTHO05D009725 2.7e-06 55.5 93 47.3
Carub.0008s2111 Capsella rubella HOM05D007887 ORTHO05D009725 3.5e-06 55.1 95 36.8
Ciclev10029602m.g Citrus clementina HOM05D007887 ORTHO05D009725 3.5e-06 55.1 43 65.1
DCAR_017079 Daucus carota HOM05D007887 ORTHO05D009725 3.5e-06 55.1 43 60.5
HanXRQChr13g0404441 Helianthus annuus HOM05D007887 ORTHO05D009725 3.5e-06 55.1 51 49.0
arahy.Tifrunner.gnm1.ann1.75MVCV Arachis hypogaea HOM05D007887 ORTHO05D009725 7.8e-06 53.9 78 44.9
CDE02G1957 Ceratophyllum demersum HOM05D041108 ORTHO05D009725 7.8e-06 53.9 53 49.1
PGSC0003DMG400008069 Solanum tuberosum HOM05D023935 ORTHO05D009725 7.8e-06 53.9 94 41.5


User provided reference genes

Program Settings