Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr4g049830 Medicago truncatula HOM05D004677 ORTHO05D005746 3.3e-158 561.6 277 100.0
TPR.G4610 Trifolium pratense HOM05D004677 ORTHO05D005746 5.9e-147 524.2 277 93.9
Psat7g201040 Pisum sativum HOM05D004677 ORTHO05D005746 4.8e-141 504.6 277 91.0
Ca_19496_v3 Cicer arietinum L. HOM05D004677 ORTHO05D005746 8.3e-141 503.8 279 91.4
Glyma.06G307800 Glycine max HOM05D004677 ORTHO05D005746 7.5e-134 480.7 268 88.8
Phvul.011G101800 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 7.0e-132 474.2 268 85.8
arahy.Tifrunner.gnm1.ann1.34K6GT Arachis hypogaea HOM05D004677 ORTHO05D005746 9.5e-129 463.8 277 83.0
VMungo1127G1216 Vigna mungo HOM05D004677 ORTHO05D005746 1.0e-127 460.3 268 83.6
arahy.Tifrunner.gnm1.ann1.5LK61T Arachis hypogaea HOM05D004677 ORTHO05D005746 5.2e-127 458.0 277 81.9
Lalb_Chr01g0005771 Lupinus albus HOM05D004677 ORTHO05D005746 2.4e-124 449.1 277 81.6
FAN02G0422 Fragaria x ananassa HOM05D004677 ORTHO05D005746 3.2e-124 448.7 276 79.3
FAN05G4912 Fragaria x ananassa HOM05D004677 ORTHO05D005746 3.2e-124 448.7 276 79.3
FvH4_6g42850 Fragaria vesca HOM05D004677 ORTHO05D005746 1.2e-123 446.8 276 79.0
CANSAT64G2258 Cannabis sativa HOM05D004677 ORTHO05D005746 7.8e-123 444.1 260 83.8
FAN14G2731 Fragaria x ananassa HOM05D004677 ORTHO05D005746 7.8e-123 444.1 276 78.3
Potri.014G155200 Populus trichocarpa HOM05D004677 ORTHO05D005746 7.8e-123 444.1 273 82.1
QL08p032142 Quercus lobata HOM05D004677 ORTHO05D005746 1.3e-122 443.4 278 81.7
Duzib133G0523 Durio zibethinus HOM05D004677 ORTHO05D005746 1.7e-122 443.0 255 85.9
Manes.13G068200 Manihot esculenta HOM05D004677 ORTHO05D005746 3.0e-122 442.2 269 82.5
TWI18G0105 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 6.6e-122 441.0 256 85.2
Prupe.3G214600 Prunus persica HOM05D004677 ORTHO05D005746 1.5e-121 439.9 278 80.2
Cfa014357 Carpinus fangiana HOM05D004677 ORTHO05D005746 4.3e-121 438.3 280 80.0
CiPaw.03G158200 Carya illinoinensis HOM05D004677 ORTHO05D005746 4.3e-121 438.3 282 79.1
Glyma.12G192200 Glycine max HOM05D004677 ORTHO05D005746 9.5e-121 437.2 240 88.3
COL.COLO4_20015 Corchorus olitorius HOM05D004677 ORTHO05D005746 3.6e-120 435.3 275 79.6
Thecc.01G176700 Theobroma cacao HOM05D004677 ORTHO05D005746 8.0e-120 434.1 257 84.0
PGR142G1137 Punica granatum HOM05D004677 ORTHO05D005746 1.0e-119 433.7 273 80.2
RcHm_v2.0_Chr2g0158791 Rosa chinensis HOM05D004677 ORTHO05D005746 2.3e-119 432.6 280 77.1
Thhalv10017055m.g Eutrema salsugineum HOM05D004677 ORTHO05D005746 4.0e-119 431.8 280 78.2
Atru.chr6.3221 Acer truncatum HOM05D004677 ORTHO05D005746 5.2e-119 431.4 282 78.0
Gohir.D07G176800 Gossypium hirsutum HOM05D004677 ORTHO05D005746 8.9e-119 430.6 283 79.5
AT2G32520 Arabidopsis thaliana HOM05D004677 ORTHO05D005746 2.0e-118 429.5 252 84.1
Gorai.001G197600 Gossypium raimondii HOM05D004677 ORTHO05D005746 2.6e-118 429.1 283 78.4
AL4G27910 Arabidopsis lyrata HOM05D004677 ORTHO05D005746 3.4e-118 428.7 281 76.9
Ciclev10016206m.g Citrus clementina HOM05D004677 ORTHO05D005746 2.9e-117 425.6 255 82.0
VMungo1080G1602 Vigna mungo HOM05D004677 ORTHO05D005746 2.9e-117 425.6 241 84.2
Aa31LG5G4780 Aethionema arabicum HOM05D004677 ORTHO05D005746 4.9e-117 424.9 279 76.7
Dinv08753 Davidia involucrata HOM05D004677 ORTHO05D005746 8.3e-117 424.1 252 82.5
Phvul.005G116100 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 1.1e-116 423.7 240 84.6
TWI36G1343 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 2.4e-116 422.5 245 84.9
Lalb_Chr01g0023241 Lupinus albus HOM05D004677 ORTHO05D005746 5.4e-116 421.4 242 83.9
FAN09G3259 Fragaria x ananassa HOM05D004677 ORTHO05D005746 7.0e-116 421.0 276 76.1
BcaC02g07915 Brassica carinata HOM05D004677 ORTHO05D005746 9.2e-116 420.6 272 78.7
C04p62010 Brassica napus HOM05D004677 ORTHO05D005746 9.2e-116 420.6 272 78.7
Actinidia09726 Actinidia chinensis HOM05D004677 ORTHO05D005746 1.6e-115 419.9 255 81.6
BolC4t27678H Brassica oleracea HOM05D004677 ORTHO05D005746 1.6e-115 419.9 252 82.5
BraA04t18010Z Brassica rapa HOM05D004677 ORTHO05D005746 1.6e-115 419.9 252 82.5
Carub.0004s1386 Capsella rubella HOM05D004677 ORTHO05D005746 1.6e-115 419.9 277 76.2
CsaV3_7G003450 Cucumis sativus L. HOM05D004677 ORTHO05D005746 2.0e-115 419.5 251 81.3
THA.LOC104800998 Tarenaya hassleriana HOM05D004677 ORTHO05D005746 7.8e-115 417.5 252 82.1
Lj3g0003247 Lotus japonicus HOM05D004677 ORTHO05D005746 1.0e-114 417.2 244 83.2
TAR629G2143 Trochodendron aralioides HOM05D004677 ORTHO05D005746 1.0e-114 417.2 256 79.7
vmacro12188 Vaccinium macrocarpon HOM05D004677 ORTHO05D005746 1.0e-114 417.2 267 77.2
Rhsim06G0164500 Rhododendron simsii HOM05D004677 ORTHO05D005746 2.3e-114 416.0 250 82.0
Hma1.2p1_0895F.1_g233790 Hydrangea macrophylla HOM05D004677 ORTHO05D005746 3.0e-114 415.6 257 79.0
MELO3C018827.2 Cucumis melo HOM05D004677 ORTHO05D005746 5.0e-114 414.8 256 79.3
ClCG02G002040 Citrullus lanatus HOM05D004677 ORTHO05D005746 8.6e-114 414.1 258 78.7
CARHR126350 Cardamine hirsuta HOM05D004677 ORTHO05D005746 1.1e-113 413.7 242 83.1
Sed0004392 Sechium edule HOM05D004677 ORTHO05D005746 1.9e-113 412.9 273 76.2
Sc12g0002230 Simmondsia chinensis HOM05D004677 ORTHO05D005746 1.9e-113 412.9 275 75.6
CSS0008737 Camellia sinensis var. sinensis HOM05D004677 ORTHO05D005746 3.3e-113 412.1 254 78.7
A04p24990 Brassica napus HOM05D004677 ORTHO05D005746 7.3e-113 411.0 242 83.5
BcaC02g11313 Brassica carinata HOM05D004677 ORTHO05D005746 9.5e-113 410.6 252 80.2
C04p17150 Brassica napus HOM05D004677 ORTHO05D005746 9.5e-113 410.6 252 80.2
BolC4t23265H Brassica oleracea HOM05D004677 ORTHO05D005746 9.5e-113 410.6 252 80.2
Haze_12810 Corylus avellana HOM05D004677 ORTHO05D005746 9.5e-113 410.6 224 87.1
MBI10_g43118_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 1.2e-112 410.2 248 79.0
Migut.M00416 Erythranthe guttata HOM05D004677 ORTHO05D005746 1.6e-112 409.8 256 78.9
Eucgr.K00785 Eucalyptus grandis HOM05D004677 ORTHO05D005746 2.8e-112 409.1 237 82.3
Sp4g14870 Schrenkiella parvula HOM05D004677 ORTHO05D005746 3.6e-112 408.7 241 83.4
BcaB06g28600 Brassica carinata HOM05D004677 ORTHO05D005746 8.1e-112 407.5 241 83.4
PSO675G6993 Papaver somniferum HOM05D004677 ORTHO05D005746 1.1e-111 407.1 243 80.7
Hund06461 Selenicereus undatus HOM05D004677 ORTHO05D005746 2.3e-111 406.0 241 83.4
BraA05t20266Z Brassica rapa HOM05D004677 ORTHO05D005746 6.8e-111 404.4 251 79.3
Cc05_g03990 Coffea canephora HOM05D004677 ORTHO05D005746 6.8e-111 404.4 273 75.5
Nitab4.5_0000006g0310 Nicotiana tabacum HOM05D004677 ORTHO05D005746 8.9e-111 404.1 251 77.7
Hund00385 Selenicereus undatus HOM05D004677 ORTHO05D005746 1.2e-110 403.7 251 79.7
Aqoxy1G03069 Aquilegia oxysepala HOM05D004677 ORTHO05D005746 4.4e-110 401.7 254 77.2
A05p13260 Brassica napus HOM05D004677 ORTHO05D005746 7.5e-110 401.0 251 78.9
Oeu027244.1 Olea europaea HOM05D004677 ORTHO05D005746 9.8e-110 400.6 239 80.8
Nitab4.5_0004702g0010 Nicotiana tabacum HOM05D004677 ORTHO05D005746 1.3e-109 400.2 252 77.0
AUR62027103 Chenopodium quinoa HOM05D004677 ORTHO05D005746 1.7e-109 399.8 272 73.5
DCAR_019755 Daucus carota HOM05D004677 ORTHO05D005746 3.7e-109 398.7 241 78.0
Sopen05g026690 Solanum pennellii HOM05D004677 ORTHO05D005746 4.9e-109 398.3 247 77.7
AUR62012879 Chenopodium quinoa HOM05D004677 ORTHO05D005746 1.1e-108 397.1 264 73.9
HanXRQChr03g0073261 Helianthus annuus HOM05D004677 ORTHO05D005746 1.4e-108 396.7 256 76.6
EL10Ac9g22065 Beta vulgaris HOM05D004677 ORTHO05D005746 5.4e-108 394.8 253 76.7
ATR0585G016 Amborella trichopoda HOM05D004677 ORTHO05D005746 1.6e-107 393.3 275 70.5
Lj3g0012150 Lotus japonicus HOM05D004677 ORTHO05D005746 1.6e-107 393.3 247 77.3
Sabra14G0117500 Salix brachista HOM05D004677 ORTHO05D005746 1.6e-107 393.3 397 56.2
Os01g0531500 Oryza sativa ssp. japonica HOM05D004677 ORTHO05D005746 4.6e-107 391.7 275 70.5
Sed0023389 Sechium edule HOM05D004677 ORTHO05D005746 1.0e-106 390.6 242 78.1
BcaB02g10464 Brassica carinata HOM05D004677 ORTHO05D005746 2.3e-106 389.4 242 78.9
Cpa.g.sc572.2 Carica papaya HOM05D004677 ORTHO05D005746 3.9e-106 388.7 299 70.2
MSTRG.14847 Avicennia marina HOM05D004677 ORTHO05D005746 5.1e-106 388.3 250 76.8
MBI10_g41369_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 5.1e-106 388.3 248 75.8
Zm00001eb162930 Zea mays HOM05D004677 ORTHO05D005746 8.6e-106 387.5 279 70.6
SEGI_04984 Sequoiadendron giganteum HOM05D004677 ORTHO05D005746 1.1e-105 387.1 263 73.4
Lsat_1_v5_gn_9_106900 Lactuca sativa HOM05D004677 ORTHO05D005746 5.6e-105 384.8 257 74.7
Gohir.A07G174750 Gossypium hirsutum HOM05D004677 ORTHO05D005746 1.2e-104 383.6 284 71.1
Peaxi162Scf00462g00089 Petunia axillaris HOM05D004677 ORTHO05D005746 6.8e-103 377.9 266 71.1
HanXRQChr15g0490311 Helianthus annuus HOM05D004677 ORTHO05D005746 2.9e-101 372.5 241 74.7
CDE02G1429 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 6.4e-101 371.3 243 76.1
Lj1A770G43 Lonicera japonica HOM05D004677 ORTHO05D005746 8.4e-101 370.9 225 77.3
MBI10_g41368_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 1.6e-99 366.7 228 78.9
HPP92_020158 Vanilla planifolia HOM05D004677 ORTHO05D005746 1.0e-98 364.0 257 69.3
Lj3g0025926 Lotus japonicus HOM05D004677 ORTHO05D005746 8.6e-98 360.9 192 91.7
SGA_v2.0_scaffold34G13862 Striga asiatica HOM05D004677 ORTHO05D005746 9.6e-97 357.5 258 70.5
SGA_v2.0_scaffold186G40184 Striga asiatica HOM05D004677 ORTHO05D005746 7.1e-92 341.3 259 67.2
Mapoly0043s0053 Marchantia polymorpha HOM05D004677 ORTHO05D005746 1.0e-90 337.4 258 66.3
SGA_v2.0_scaffold445G51724 Striga asiatica HOM05D004677 ORTHO05D005746 2.3e-90 336.3 249 68.3
MBI10_g35587_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 8.7e-90 334.3 246 69.1
Lj5g0020236 Lotus japonicus HOM05D004677 ORTHO05D005746 1.3e-88 330.5 285 62.5
ECA240G0706 Erigeron canadensis HOM05D004677 ORTHO05D005746 1.1e-87 327.4 223 71.7
SMO351G0384 Selaginella moellendorffii HOM05D004677 ORTHO05D005746 1.5e-86 323.6 243 63.0
Lsat_1_v5_gn_9_106880 Lactuca sativa HOM05D004677 ORTHO05D005746 1.9e-84 316.6 239 65.7
Pp3c16_5740 Physcomitrium patens HOM05D004677 ORTHO05D005746 4.6e-83 312.0 237 63.3
Solyc05g043430.4 Solanum lycopersicum HOM05D004677 ORTHO05D005746 2.1e-80 303.1 176 85.2
CBR_g23740 Chara braunii HOM05D004677 ORTHO05D005746 1.4e-79 300.4 238 61.8
MD09G1072400 Malus domestica HOM05D004677 ORTHO05D005746 5.3e-79 298.5 226 68.6
Lj2g0012873 Lotus japonicus HOM05D004677 ORTHO05D005746 4.5e-78 295.4 283 56.9
TAR627G1178 Trochodendron aralioides HOM05D004677 ORTHO05D005746 3.2e-76 289.3 189 73.0
Oeu036746.3 Olea europaea HOM05D004677 ORTHO05D005746 6.2e-72 275.0 241 59.3
Lj2g0026590 Lotus japonicus HOM05D004677 ORTHO05D005746 6.9e-71 271.6 257 56.4
SHI10364 Sapria himalayana HOM05D004677 ORTHO05D005746 1.5e-70 270.4 203 67.5
HPP92_020157 Vanilla planifolia HOM05D004677 ORTHO05D005746 1.1e-63 247.7 221 57.5
Lj3g0001260 Lotus japonicus HOM05D004677 ORTHO05D005746 7.6e-62 241.5 270 51.9
AagrBONN_evm.TU.Sc2ySwM_117.68 Anthoceros agrestis HOM05D004677 ORTHO05D005746 2.7e-59 233.0 171 63.2
unitig_0.g733 Utricularia gibba HOM05D004677 ORTHO05D005746 7.4e-57 224.9 134 82.8
Nn1g03456 Nelumbo nucifera HOM05D004677 ORTHO05D005746 5.3e-55 218.8 137 78.8
MD17G1099100 Malus domestica HOM05D004677 ORTHO05D005746 6.9e-55 218.4 127 85.0
MCO13G274 Micromonas commoda HOM05D004677 ORTHO05D005746 2.8e-48 196.4 223 43.9
CDE08G1094 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 1.0e-45 188.0 126 73.8
Cre06.g294000 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 3.0e-42 176.4 220 41.8
PRCOL_00005478 Prasinoderma coloniale HOM05D004677 ORTHO05D005746 6.7e-42 175.3 219 41.6
CDE08G0164 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 1.5e-41 174.1 109 78.0
arahy.Tifrunner.gnm1.ann1.4D0QE2 Arachis hypogaea HOM05D004677 ORTHO05D005746 1.0e-37 161.4 116 71.6
SGA_v2.0_scaffold228G43250 Striga asiatica HOM05D004677 ORTHO05D005746 7.5e-33 145.2 87 75.9
arahy.Tifrunner.gnm1.ann1.65RE86 Arachis hypogaea HOM05D004677 ORTHO05D005746 1.7e-32 144.1 172 48.8
Nn1g04350 Nelumbo nucifera HOM05D004677 ORTHO05D005746 2.2e-32 143.7 84 81.0
arahy.Tifrunner.gnm1.ann1.IJK42W Arachis hypogaea HOM05D004677 ORTHO05D005746 1.8e-31 140.6 120 60.8
MD17G1099200 Malus domestica HOM05D004677 ORTHO05D005746 5.7e-25 119.0 75 80.0
DCAR_013148 Daucus carota HOM05D004677 ORTHO05D005746 4.8e-24 115.9 118 56.8
Cre06.g258600 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 1.4e-23 114.4 254 29.9
Nn3g18971 Nelumbo nucifera HOM05D004677 ORTHO05D005746 8.0e-19 98.6 69 71.0
AagrBONN_evm.TU.Sc2ySwM_117.4165 Anthoceros agrestis HOM05D004677 ORTHO05D005746 1.3e-16 91.3 86 53.5
arahy.Tifrunner.gnm1.ann1.B7RHXH Arachis hypogaea HOM05D004677 ORTHO05D005746 2.8e-16 90.1 160 40.0
FAN09G2974 Fragaria x ananassa HOM05D004677 ORTHO05D005746 2.7e-14 83.6 47 80.9
arahy.Tifrunner.gnm1.ann1.G1NRGV Arachis hypogaea HOM05D004677 ORTHO05D005746 2.8e-11 73.6 71 54.9
arahy.Tifrunner.gnm1.ann1.LRB7BH Arachis hypogaea HOM05D004677 ORTHO05D005746 8.0e-11 72.0 69 56.5
Aqoxy5G02648 Aquilegia oxysepala HOM05D003774 ORTHO05D009174 1.3e-08 64.7 238 26.5
Ciclev10001943m.g Citrus clementina HOM05D003774 ORTHO05D009174 4.1e-07 59.7 244 25.0
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 5.4e-07 59.3 174 27.6
AagrBONN_evm.TU.Sc2ySwM_117.58 Anthoceros agrestis HOM05D004677 ORTHO05D074401 1.6e-06 57.8 73 41.1
Nitab4.5_0005616g0010 Nicotiana tabacum HOM05D003774 ORTHO05D009174 2.7e-06 57.0 227 26.4
Sabra13G0091200 Salix brachista HOM05D003774 ORTHO05D009174 2.7e-06 57.0 223 28.7
TWI59G1355 Tripterygium wilfordii HOM05D003774 ORTHO05D009174 2.7e-06 57.0 270 26.7
AUR62023544 Chenopodium quinoa HOM05D003774 ORTHO05D009174 4.6e-06 56.2 242 25.2
Ciclev10030258m.g Citrus clementina HOM05D004677 ORTHO05D005746 4.6e-06 56.2 37 70.3


User provided reference genes

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