Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr4g039880 Medicago truncatula HOM05D000453 ORTHO05D006365 9.5e-49 196.4 93 100.0
Medtr3g110185 Medicago truncatula HOM05D001382 ORTHO05D001266 1.3e-45 186.0 89 97.8
TPR.G1389 Trifolium pratense HOM05D000453 ORTHO05D006365 3.4e-38 161.4 91 87.9
Psat5g022120 Pisum sativum HOM05D000453 ORTHO05D006365 1.6e-32 142.5 83 84.3
Ca_15600_v3 Cicer arietinum L. HOM05D000453 ORTHO05D006365 2.3e-31 138.7 85 83.5
CSS0042960 Camellia sinensis var. sinensis HOM05D000453 ORTHO05D006365 8.3e-29 130.2 92 69.6
CiPaw.07G204900 Carya illinoinensis HOM05D000453 ORTHO05D006365 1.6e-27 125.9 88 71.6
Cc08_g09440 Coffea canephora HOM05D000453 ORTHO05D006365 7.8e-27 123.6 90 66.7
Nn3g18155 Nelumbo nucifera HOM05D000453 ORTHO05D006365 1.1e-25 119.8 88 68.2
Lalb_Chr08g0243101 Lupinus albus HOM05D000453 ORTHO05D006365 1.6e-24 115.9 75 78.7
TAR375G0335 Trochodendron aralioides HOM05D000453 ORTHO05D006365 1.1e-23 113.2 87 67.8
arahy.Tifrunner.gnm1.ann1.ERQ37Z Arachis hypogaea HOM05D000453 ORTHO05D006365 2.3e-23 112.1 81 71.6
arahy.Tifrunner.gnm1.ann1.VF9H9Z Arachis hypogaea HOM05D000453 ORTHO05D006365 2.3e-23 112.1 81 71.6
VMungo1309G0607 Vigna mungo HOM05D000453 ORTHO05D006365 5.2e-23 110.9 74 75.7
Dinv14253 Davidia involucrata HOM05D000453 ORTHO05D006365 6.8e-23 110.5 86 62.8
GSVIVG01035639001 Vitis vinifera HOM05D000453 ORTHO05D006365 6.8e-23 110.5 81 72.8
Glyma.06G084700 Glycine max HOM05D000453 ORTHO05D006365 1.2e-22 109.8 77 72.7
Phvul.009G108900 Phaseolus vulgaris HOM05D000453 ORTHO05D006365 1.2e-22 109.8 74 74.3
TAR624G0965 Trochodendron aralioides HOM05D000453 ORTHO05D006365 2.0e-22 109.0 75 70.7
MSTRG.11702 Avicennia marina HOM05D000453 ORTHO05D006365 3.4e-22 108.2 93 61.3
TAR624G0894 Trochodendron aralioides HOM05D000453 ORTHO05D006365 9.9e-22 106.7 83 62.7
Lj1g0012409 Lotus japonicus HOM05D000453 ORTHO05D006365 3.7e-21 104.8 74 73.0
TAR102G0001 Trochodendron aralioides HOM05D000453 ORTHO05D006365 3.7e-21 104.8 75 69.3
Gohir.A06G093700 Gossypium hirsutum HOM05D000453 ORTHO05D006365 1.4e-20 102.8 75 68.0
Gohir.D06G093400 Gossypium hirsutum HOM05D000453 ORTHO05D006365 1.4e-20 102.8 75 68.0
PSO210G7284 Papaver somniferum HOM05D000453 ORTHO05D006365 1.4e-20 102.8 91 58.2
Thecc.09G043500 Theobroma cacao HOM05D000453 ORTHO05D006365 1.4e-20 102.8 76 71.1
Gohir.D13G192900 Gossypium hirsutum HOM05D000453 ORTHO05D006365 1.9e-20 102.4 76 68.4
Sabra06G0187200 Salix brachista HOM05D000453 ORTHO05D006365 1.9e-20 102.4 74 71.6
AUR62026130 Chenopodium quinoa HOM05D000453 ORTHO05D006365 2.4e-20 102.1 88 58.0
unitig_88.g27691 Utricularia gibba HOM05D000453 ORTHO05D006365 5.4e-20 100.9 88 60.2
Gohir.A13G186100 Gossypium hirsutum HOM05D000453 ORTHO05D006365 7.1e-20 100.5 74 68.9
Gorai.010G107800 Gossypium raimondii HOM05D000453 ORTHO05D006365 9.2e-20 100.1 75 66.7
Gorai.013G218800 Gossypium raimondii HOM05D000453 ORTHO05D006365 1.2e-19 99.8 74 68.9
Nn2g11644 Nelumbo nucifera HOM05D000453 ORTHO05D006365 1.2e-19 99.8 78 67.9
QL12p029125 Quercus lobata HOM05D000453 ORTHO05D006365 1.2e-19 99.8 74 68.9
AUR62030399 Chenopodium quinoa HOM05D000453 ORTHO05D006365 1.6e-19 99.4 88 55.7
COL.COLO4_18656 Corchorus olitorius HOM05D000453 ORTHO05D006365 2.1e-19 99.0 75 66.7
Atru.chr7.2101 Acer truncatum HOM05D000453 ORTHO05D006365 3.5e-19 98.2 87 64.4
Atru.chr7.2117 Acer truncatum HOM05D000453 ORTHO05D006365 3.5e-19 98.2 87 64.4
Potri.006G239600 Populus trichocarpa HOM05D000453 ORTHO05D006365 3.5e-19 98.2 74 64.9
Duzib168G0898 Durio zibethinus HOM05D000453 ORTHO05D006365 4.6e-19 97.8 74 66.2
TAR624G1294 Trochodendron aralioides HOM05D000453 ORTHO05D006365 7.8e-19 97.1 76 61.8
AUR62041710 Chenopodium quinoa HOM05D000453 ORTHO05D006365 1.0e-18 96.7 85 56.5
Manes.03G062400 Manihot esculenta HOM05D000453 ORTHO05D006365 1.0e-18 96.7 80 62.5
Ciclev10008234m.g Citrus clementina HOM05D000453 ORTHO05D006365 1.3e-18 96.3 82 59.8
Nitab4.5_0000837g0070 Nicotiana tabacum HOM05D000453 ORTHO05D006365 1.3e-18 96.3 82 61.0
PSO210G5506 Papaver somniferum HOM05D000453 ORTHO05D006365 1.3e-18 96.3 85 58.8
Duzib187G1218 Durio zibethinus HOM05D000453 ORTHO05D006365 2.3e-18 95.5 75 66.7
Nitab4.5_0000151g0400 Nicotiana tabacum HOM05D000453 ORTHO05D006365 2.3e-18 95.5 82 61.0
Prupe.3G063300 Prunus persica HOM05D000453 ORTHO05D006365 2.3e-18 95.5 89 58.4
EL10Ac2g04032 Beta vulgaris HOM05D000453 ORTHO05D006365 5.1e-18 94.4 86 54.7
MELO3C003461.2 Cucumis melo HOM05D000453 ORTHO05D006365 1.1e-17 93.2 95 51.6
Aqoxy1G03882 Aquilegia oxysepala HOM05D000453 ORTHO05D006365 2.5e-17 92.0 103 45.6
AUR62039690 Chenopodium quinoa HOM05D000453 ORTHO05D006365 4.3e-17 91.3 85 56.5
AUR62044183 Chenopodium quinoa HOM05D000453 ORTHO05D006365 4.3e-17 91.3 85 56.5
Sopen08g020800 Solanum pennellii HOM05D000453 ORTHO05D006365 4.3e-17 91.3 89 58.4
TWI63G0644 Tripterygium wilfordii HOM05D000453 ORTHO05D006365 7.3e-17 90.5 80 61.2
unitig_748.g7993 Utricularia gibba HOM05D000453 ORTHO05D006365 7.3e-17 90.5 88 53.4
EL10Ac3g07163 Beta vulgaris HOM05D000453 ORTHO05D006365 9.6e-17 90.1 84 52.4
Migut.D01007 Erythranthe guttata HOM05D000453 ORTHO05D006365 9.6e-17 90.1 90 57.8
PGSC0003DMG400009600 Solanum tuberosum HOM05D000453 ORTHO05D006365 9.6e-17 90.1 88 55.7
Aqoxy7G03920 Aquilegia oxysepala HOM05D000453 ORTHO05D006365 1.6e-16 89.4 87 49.4
Nn3g18156 Nelumbo nucifera HOM05D000453 ORTHO05D006365 1.6e-16 89.4 74 54.1
ATR0171G005 Amborella trichopoda HOM05D000453 ORTHO05D006365 2.1e-16 89.0 87 49.4
Aqoxy7G01506 Aquilegia oxysepala HOM05D000453 ORTHO05D006365 2.1e-16 89.0 74 59.5
AUR62041707 Chenopodium quinoa HOM05D000453 ORTHO05D006365 2.8e-16 88.6 91 50.5
MBI01_g06186_MAGBIO Magnolia biondii HOM05D000453 ORTHO05D006365 3.6e-16 88.2 75 58.7
EL10Ac2g04025 Beta vulgaris HOM05D000453 ORTHO05D006365 4.7e-16 87.8 87 55.2
AUR62043394 Chenopodium quinoa HOM05D000453 ORTHO05D006365 4.7e-16 87.8 91 50.5
Dinv30281 Davidia involucrata HOM05D000453 ORTHO05D006365 6.2e-16 87.4 72 61.1
Rhsim12G0201600 Rhododendron simsii HOM05D000453 ORTHO05D006365 6.2e-16 87.4 76 60.5
EL10Ac2g04030 Beta vulgaris HOM05D000453 ORTHO05D006365 8.1e-16 87.0 85 54.1
CSS0047985 Camellia sinensis var. sinensis HOM05D000453 ORTHO05D006365 1.1e-15 86.7 75 58.7
Oeu036365.1 Olea europaea HOM05D000453 ORTHO05D006365 2.4e-15 85.5 78 60.3
Prupe.1G449400 Prunus persica HOM05D000453 ORTHO05D006365 3.1e-15 85.1 72 59.7
Actinidia08997 Actinidia chinensis HOM05D000453 ORTHO05D006365 5.2e-15 84.3 75 57.3
Dinv30465 Davidia involucrata HOM05D000453 ORTHO05D006365 6.8e-15 84.0 82 52.4
CSS0014295 Camellia sinensis var. sinensis HOM05D000453 ORTHO05D006365 1.2e-14 83.2 75 53.3
Cfa013377 Carpinus fangiana HOM05D000453 ORTHO05D006365 1.2e-14 83.2 73 63.0
Oeu050613.1 Olea europaea HOM05D000453 ORTHO05D006365 2.6e-14 82.0 75 56.0
SalBow4G0122 Salvia bowleyana HOM05D000453 ORTHO05D006365 3.4e-14 81.6 81 61.7
DCAR_004476 Daucus carota HOM05D000453 ORTHO05D006365 4.4e-14 81.3 79 54.4
SalBow4G2370 Salvia bowleyana HOM05D000453 ORTHO05D006365 4.4e-14 81.3 87 49.4
Hma1.2p1_0590F.1_g185130 Hydrangea macrophylla HOM05D000453 ORTHO05D006365 5.8e-14 80.9 84 56.0
Cfa002109 Carpinus fangiana HOM05D000453 ORTHO05D006365 7.6e-14 80.5 75 54.7
Migut.A00216 Erythranthe guttata HOM05D000453 ORTHO05D006365 9.9e-14 80.1 95 52.6
Dinv38004 Davidia involucrata HOM05D000453 ORTHO05D006365 1.3e-13 79.7 80 57.5
Oeu040357.1 Olea europaea HOM05D000453 ORTHO05D006365 2.2e-13 79.0 75 52.0
Lj9P510T74 Lonicera japonica HOM05D000453 ORTHO05D006365 3.8e-13 78.2 75 52.0
QL05p021232 Quercus lobata HOM05D000453 ORTHO05D006365 3.8e-13 78.2 75 54.7
ClCG07G013210 Citrullus lanatus HOM05D000453 ORTHO05D006365 6.4e-13 77.4 91 47.3
FAN15G3649 Fragaria x ananassa HOM05D000433 ORTHO05D003991 6.4e-13 77.4 72 58.3
FAN14G3521 Fragaria x ananassa HOM05D000453 ORTHO05D006365 1.1e-12 76.6 77 58.4
RcHm_v2.0_Chr2g0139471 Rosa chinensis HOM05D000453 ORTHO05D006365 1.1e-12 76.6 77 58.4
MELO3C012985.2 Cucumis melo HOM05D000453 ORTHO05D006365 1.4e-12 76.3 90 51.1
FvH4_6g31961 Fragaria vesca HOM05D000453 ORTHO05D006365 1.4e-12 76.3 77 58.4
MD09G1207500 Malus domestica HOM05D000453 ORTHO05D006365 1.4e-12 76.3 77 57.1
Cc04_g02850 Coffea canephora HOM05D000453 ORTHO05D006365 1.9e-12 75.9 76 55.3
unitig_22.g5755 Utricularia gibba HOM05D000453 ORTHO05D006365 1.9e-12 75.9 92 45.7
CsaV3_3G023760 Cucumis sativus L. HOM05D000453 ORTHO05D006365 3.2e-12 75.1 89 50.6
QL05p021212 Quercus lobata HOM05D000453 ORTHO05D006365 3.2e-12 75.1 74 52.7
Ah.10g035060 Amaranthus hybridus HOM05D000453 ORTHO05D006365 5.4e-12 74.3 86 46.5
AUR62009296 Chenopodium quinoa HOM05D000453 ORTHO05D006365 5.4e-12 74.3 50 66.0
MD17G1188800 Malus domestica HOM05D000453 ORTHO05D006365 5.4e-12 74.3 77 54.5
CiPaw.01G234000 Carya illinoinensis HOM05D000453 ORTHO05D006365 7.1e-12 73.9 74 48.6
Lj7P703T49 Lonicera japonica HOM05D000453 ORTHO05D006365 1.6e-11 72.8 78 51.3
SalBow7G0919 Salvia bowleyana HOM05D000453 ORTHO05D006365 1.6e-11 72.8 75 52.0
AUR62043391 Chenopodium quinoa HOM05D000453 ORTHO05D006365 2.7e-11 72.0 47 66.0
PGR102G1576 Punica granatum HOM05D000453 ORTHO05D006365 7.8e-11 70.5 72 51.4
MSTRG.11043 Avicennia marina HOM05D000453 ORTHO05D006365 1.0e-10 70.1 79 48.1
CiPaw.02G147800 Carya illinoinensis HOM05D000453 ORTHO05D006365 1.3e-10 69.7 73 46.6
AUR62009292 Chenopodium quinoa HOM05D000453 ORTHO05D006365 1.3e-10 69.7 43 74.4
Actinidia08999 Actinidia chinensis HOM05D000453 ORTHO05D006365 2.3e-10 68.9 68 51.5
CSS0000941 Camellia sinensis var. sinensis HOM05D000453 ORTHO05D006365 8.7e-10 67.0 44 68.2
Ah.16g105700 Amaranthus hybridus HOM05D000453 ORTHO05D006365 1.9e-09 65.9 53 54.7
Eucgr.F03053 Eucalyptus grandis HOM05D000453 ORTHO05D006365 1.9e-09 65.9 72 54.2
Sed0017283 Sechium edule HOM05D000453 ORTHO05D006365 1.9e-09 65.9 91 44.0
unitig_8.g4046 Utricularia gibba HOM05D000453 ORTHO05D006365 2.5e-09 65.5 67 49.3
SalBow4G2932 Salvia bowleyana HOM05D000453 ORTHO05D006365 3.3e-09 65.1 48 54.2
FAN20G2262 Fragaria x ananassa HOM05D000453 ORTHO05D006365 7.3e-09 63.9 52 63.5
MBI03_g45147_MAGBIO Magnolia biondii HOM05D000453 ORTHO05D006365 4.8e-08 61.2 39 66.7
CANSAT25G0078 Cannabis sativa HOM05D000453 ORTHO05D006365 1.8e-07 59.3 95 40.0
FvH4_2g35690 Fragaria vesca HOM05D000453 ORTHO05D006365 2.4e-07 58.9 48 64.6
FAN27G3253 Fragaria x ananassa HOM05D000453 ORTHO05D006365 5.3e-07 57.8 48 62.5
PGR044G2181 Punica granatum HOM05D000453 ORTHO05D006365 6.9e-07 57.4 48 62.5
MD08G1115200 Malus domestica HOM05D000453 ORTHO05D006365 9.0e-07 57.0 36 69.4
Zm00001eb339280 Zea mays HOM05D000453 ORTHO05D006365 9.0e-07 57.0 110 34.5
MBI03_g46671_MAGBIO Magnolia biondii HOM05D000453 ORTHO05D006365 1.2e-06 56.6 39 64.1
Sc03g0001210 Simmondsia chinensis HOM05D000453 ORTHO05D006365 2.0e-06 55.8 41 65.9
Oeu053987.1 Olea europaea HOM05D000453 ORTHO05D006365 4.4e-06 54.7 87 36.8


User provided reference genes

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