Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr4g037265 Medicago truncatula HOM05D007525 ORTHO05D003398 1.7e-105 386.0 183 100.0
Medtr8g028545 Medicago truncatula HOM05D007525 ORTHO05D003398 2.4e-27 126.3 132 55.3
TPR.G28291 Trifolium pratense HOM05D007525 ORTHO05D003398 7.1e-24 114.8 129 50.4
Psat4g157560 Pisum sativum HOM05D007525 ORTHO05D003398 2.1e-23 113.2 129 49.6
Ca_03496_v3 Cicer arietinum L. HOM05D007525 ORTHO05D003398 4.6e-23 112.1 129 48.1
VMungo0331G0679 Vigna mungo HOM05D007525 ORTHO05D003398 3.0e-22 109.4 129 48.8
Lj3g0004891 Lotus japonicus HOM05D007525 ORTHO05D003398 4.3e-21 105.5 54 87.0
Phvul.010G105000 Phaseolus vulgaris HOM05D007525 ORTHO05D003398 9.6e-21 104.4 54 87.0
Lalb_Chr10g0096641 Lupinus albus HOM05D007525 ORTHO05D003398 2.1e-20 103.2 54 85.2
CSS0031135 Camellia sinensis var. sinensis HOM05D007525 ORTHO05D003398 8.2e-20 101.3 54 81.5
TAR636G1192 Trochodendron aralioides HOM05D007525 ORTHO05D003398 8.2e-20 101.3 54 81.5
Duzib133G0712 Durio zibethinus HOM05D007525 ORTHO05D003398 1.8e-19 100.1 54 81.5
Cfa003884 Carpinus fangiana HOM05D007525 ORTHO05D003398 2.4e-19 99.8 54 79.6
PGR042G3120 Punica granatum HOM05D007525 ORTHO05D003398 2.4e-19 99.8 93 57.0
Sc23g0002640 Simmondsia chinensis HOM05D007525 ORTHO05D003398 2.4e-19 99.8 56 76.8
Actinidia10060 Actinidia chinensis HOM05D007525 ORTHO05D003398 3.1e-19 99.4 54 79.6
Eucgr.E00102 Eucalyptus grandis HOM05D007525 ORTHO05D003398 3.1e-19 99.4 54 79.6
MBI04_g26962_MAGBIO Magnolia biondii HOM05D007525 ORTHO05D003398 3.1e-19 99.4 54 81.5
EL10Ac1g00368 Beta vulgaris HOM05D007525 ORTHO05D003398 5.3e-19 98.6 54 79.6
Nn1g01647 Nelumbo nucifera HOM05D007525 ORTHO05D003398 5.3e-19 98.6 54 77.8
AUR62022606 Chenopodium quinoa HOM05D007525 ORTHO05D003398 6.9e-19 98.2 54 79.6
FvH4_7g15085 Fragaria vesca HOM05D007525 ORTHO05D003398 6.9e-19 98.2 54 81.5
FAN06G0785 Fragaria x ananassa HOM05D003847 ORTHO05D004976 6.9e-19 98.2 54 81.5
FAN06G4494 Fragaria x ananassa HOM05D003847 ORTHO05D004976 6.9e-19 98.2 54 81.5
Gohir.A07G140800 Gossypium hirsutum HOM05D007525 ORTHO05D003398 6.9e-19 98.2 54 79.6
Lsat_1_v5_gn_3_138380 Lactuca sativa HOM05D007525 ORTHO05D003398 6.9e-19 98.2 54 79.6
Manes.05G030450 Manihot esculenta HOM05D007525 ORTHO05D003398 6.9e-19 98.2 54 79.6
QL04p055069 Quercus lobata HOM05D007525 ORTHO05D003398 6.9e-19 98.2 49 89.8
Thecc.01G354100 Theobroma cacao HOM05D007525 ORTHO05D003398 6.9e-19 98.2 54 79.6
Gohir.D07G146200 Gossypium hirsutum HOM05D007525 ORTHO05D003398 9.0e-19 97.8 54 79.6
Gorai.001G158400 Gossypium raimondii HOM05D007525 ORTHO05D003398 9.0e-19 97.8 54 79.6
COL.COLO4_12762 Corchorus olitorius HOM05D007525 ORTHO05D003398 1.5e-18 97.1 54 77.8
FAN10G2623 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.5e-18 97.1 54 79.6
FAN10G3432 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.5e-18 97.1 54 79.6
vmacro13241 Vaccinium macrocarpon HOM05D007525 ORTHO05D003398 1.5e-18 97.1 54 77.8
GSVIVG01026980001 Vitis vinifera HOM05D007525 ORTHO05D003398 1.5e-18 97.1 54 75.9
Atru.chr5.548 Acer truncatum HOM05D007525 ORTHO05D003398 2.0e-18 96.7 54 77.8
CANSAT56G0175 Cannabis sativa HOM05D007525 ORTHO05D003398 2.0e-18 96.7 54 77.8
Aqoxy7G00302 Aquilegia oxysepala HOM05D007525 ORTHO05D003398 2.6e-18 96.3 54 77.8
Lj7A509T109 Lonicera japonica HOM05D007525 ORTHO05D003398 2.6e-18 96.3 54 77.8
Prupe.2G175600 Prunus persica HOM05D007525 ORTHO05D003398 2.6e-18 96.3 53 81.1
CDE12G0297 Ceratophyllum demersum HOM05D007525 ORTHO05D003398 3.4e-18 95.9 54 77.8
Os04g0578200 Oryza sativa ssp. japonica HOM05D007525 ORTHO05D003398 3.4e-18 95.9 54 79.6
Cpa.g.sc184.25 Carica papaya HOM05D007525 ORTHO05D003398 4.5e-18 95.5 55 74.5
Cc00_g17820 Coffea canephora HOM05D007525 ORTHO05D003398 4.5e-18 95.5 55 76.4
Dinv32510 Davidia involucrata HOM05D003847 ORTHO05D004976 4.5e-18 95.5 54 75.9
Migut.N01460 Erythranthe guttata HOM05D007525 ORTHO05D003398 4.5e-18 95.5 54 77.8
Nitab4.5_0010703g0010 Nicotiana tabacum HOM05D007525 ORTHO05D003398 4.5e-18 95.5 55 74.5
RcHm_v2.0_Chr1g0357281 Rosa chinensis HOM05D007525 ORTHO05D003398 4.5e-18 95.5 54 79.6
CAN.G78.117 Capsicum annuum HOM05D007525 ORTHO05D003398 5.8e-18 95.1 54 77.8
Nitab4.5_0000915g0170 Nicotiana tabacum HOM05D007525 ORTHO05D003398 5.8e-18 95.1 55 74.5
Peaxi162Scf00020g00126 Petunia axillaris HOM05D007525 ORTHO05D003398 5.8e-18 95.1 55 74.5
Rhsim07G0011500 Rhododendron simsii HOM05D001943 ORTHO05D001969 5.8e-18 95.1 54 75.9
Zm00001eb073280 Zea mays HOM05D007525 ORTHO05D003398 5.8e-18 95.1 54 77.8
Ciclev10022006m.g Citrus clementina HOM05D007525 ORTHO05D003398 7.6e-18 94.7 54 74.1
HanXRQChr03g0093451 Helianthus annuus HOM05D007525 ORTHO05D003398 7.6e-18 94.7 54 75.9
Potri.002G162800 Populus trichocarpa HOM05D007525 ORTHO05D003398 7.6e-18 94.7 54 77.8
ATR0661G217 Amborella trichopoda HOM05D007525 ORTHO05D003398 1.0e-17 94.4 54 77.8
Sopen01g038780 Solanum pennellii HOM05D007525 ORTHO05D003398 1.0e-17 94.4 54 77.8
TWI59G1390 Tripterygium wilfordii HOM05D007525 ORTHO05D003398 1.0e-17 94.4 55 74.5
MSTRG.4841 Avicennia marina HOM05D007525 ORTHO05D003398 1.3e-17 94.0 54 74.1
MELO3C021185.2 Cucumis melo HOM05D007525 ORTHO05D003398 1.3e-17 94.0 54 75.9
PGSC0003DMG400000187 Solanum tuberosum HOM05D007525 ORTHO05D003398 1.3e-17 94.0 54 77.8
MD01G1069500 Malus domestica HOM05D007525 ORTHO05D003398 1.7e-17 93.6 54 77.8
Oeu036594.1 Olea europaea HOM05D007525 ORTHO05D003398 1.7e-17 93.6 54 74.1
Zm00001eb250490 Zea mays HOM05D007525 ORTHO05D003398 1.7e-17 93.6 54 77.8
Solyc01g095000.3 Solanum lycopersicum HOM05D007525 ORTHO05D003398 2.2e-17 93.2 54 75.9
unitig_22.g6725 Utricularia gibba HOM05D007525 ORTHO05D003398 2.2e-17 93.2 55 72.7
A05p06060 Brassica napus HOM05D007525 ORTHO05D003398 2.9e-17 92.8 55 76.4
C04p06980 Brassica napus HOM05D005821 ORTHO05D006649 2.9e-17 92.8 55 76.4
BolC4t22319H Brassica oleracea HOM05D005821 ORTHO05D006649 2.9e-17 92.8 55 76.4
Ah.05g180250 Amaranthus hybridus HOM05D007525 ORTHO05D003398 3.8e-17 92.4 54 74.1
ClCG06G003450 Citrullus lanatus HOM05D007525 ORTHO05D003398 3.8e-17 92.4 54 74.1
ECA240G1228 Erigeron canadensis HOM05D007525 ORTHO05D003398 3.8e-17 92.4 54 72.2
Sabra02G0147700 Salix brachista HOM05D007525 ORTHO05D003398 6.5e-17 91.7 54 74.1
SGA_v2.0_scaffold43G16396 Striga asiatica HOM05D007525 ORTHO05D003398 6.5e-17 91.7 54 72.2
CsaV3_6G000860 Cucumis sativus L. HOM05D007525 ORTHO05D003398 8.4e-17 91.3 54 74.1
PSO478G5123 Papaver somniferum HOM05D007525 ORTHO05D003398 8.4e-17 91.3 54 72.2
AT2G46100 Arabidopsis thaliana HOM05D007525 ORTHO05D003398 1.1e-16 90.9 54 75.9
SalBow5G0215 Salvia bowleyana HOM05D007525 ORTHO05D003398 1.1e-16 90.9 54 70.4
Carub.0004s2880 Capsella rubella HOM05D007525 ORTHO05D003398 1.4e-16 90.5 54 75.9
Sed0025619 Sechium edule HOM05D007525 ORTHO05D003398 1.4e-16 90.5 54 72.2
AL4G45330 Arabidopsis lyrata HOM05D007525 ORTHO05D003398 2.5e-16 89.7 54 74.1
Thhalv10001607m.g Eutrema salsugineum HOM05D007525 ORTHO05D003398 2.5e-16 89.7 54 74.1
Hund27252 Selenicereus undatus HOM05D003847 ORTHO05D004976 2.5e-16 89.7 54 70.4
THA.LOC104817313 Tarenaya hassleriana HOM05D007525 ORTHO05D003398 2.5e-16 89.7 64 62.5
DCAR_025212 Daucus carota HOM05D001555 ORTHO05D001616 3.2e-16 89.4 49 79.6
CiPaw.01G065400 Carya illinoinensis HOM05D007525 ORTHO05D003398 4.2e-16 89.0 43 90.7
HPP92_021017 Vanilla planifolia HOM05D007525 ORTHO05D003398 4.2e-16 89.0 52 73.1
Aa31LG1G27510 Aethionema arabicum HOM05D005821 ORTHO05D006649 5.5e-16 88.6 54 72.2
Medtr4g059530 Medicago truncatula HOM05D004609 ORTHO05D005537 6.0e-15 85.1 58 56.9
Medtr4g459430 Medicago truncatula HOM05D004609 ORTHO05D005537 6.0e-15 85.1 58 56.9
Zm00001eb036490 Zea mays HOM05D007525 ORTHO05D003398 6.0e-15 85.1 81 54.3
Medtr4g093760 Medicago truncatula HOM05D000003 ORTHO05D002335 2.3e-14 83.2 58 58.6
Sp4g28160 Schrenkiella parvula HOM05D007525 ORTHO05D003398 5.1e-14 82.0 41 87.8
Medtr6g072515 Medicago truncatula HOM05D000003 ORTHO05D002335 1.1e-13 80.9 58 56.9
Medtr3g070320 Medicago truncatula HOM05D000003 ORTHO05D002335 2.5e-13 79.7 96 37.5
Glyma.16G031100 Glycine max HOM05D007525 ORTHO05D003398 3.3e-13 79.3 51 72.5
Medtr7g089465 Medicago truncatula HOM05D000003 ORTHO05D002335 3.7e-12 75.9 57 54.4
Medtr3g112330 Medicago truncatula HOM05D000003 ORTHO05D002335 2.4e-11 73.2 58 50.0
Medtr5g007390 Medicago truncatula HOM05D000003 ORTHO05D002335 3.1e-11 72.8 55 50.9
Haze_15550 Corylus avellana HOM05D007525 ORTHO05D003398 6.9e-11 71.6 37 81.1
Medtr5g048020 Medicago truncatula HOM05D000003 ORTHO05D002335 9.0e-11 71.2 56 55.4
Medtr7g106620 Medicago truncatula HOM05D000003 ORTHO05D002335 1.5e-10 70.5 51 56.9
AagrBONN_evm.TU.Sc2ySwM_228.1193 Anthoceros agrestis HOM05D007525 ORTHO05D003398 1.0e-09 67.8 54 48.1
AUR62004400 Chenopodium quinoa HOM05D007525 ORTHO05D003398 1.7e-09 67.0 34 85.3
TPR.G37075 Trifolium pratense HOM05D000003 ORTHO05D002335 1.7e-09 67.0 57 52.6
Medtr5g027610 Medicago truncatula HOM05D000003 ORTHO05D002335 6.5e-09 65.1 53 50.9
Mapoly0153s0018 Marchantia polymorpha HOM05D007525 ORTHO05D003398 8.5e-09 64.7 54 48.1
Medtr5g027710 Medicago truncatula HOM05D000003 ORTHO05D048906 8.5e-09 64.7 53 50.9
TPR.G13582 Trifolium pratense HOM05D000003 ORTHO05D002335 8.5e-09 64.7 56 50.0
TPR.G14763 Trifolium pratense HOM05D015915 ORTHO05D017839 1.1e-08 64.3 56 50.0
Medtr8g077330 Medicago truncatula HOM05D000003 ORTHO05D002335 3.2e-08 62.8 58 44.8
Medtr1g015073 Medicago truncatula HOM05D000003 ORTHO05D002335 7.2e-08 61.6 58 39.7
CBR_g31994 Chara braunii HOM05D007525 ORTHO05D003398 9.4e-08 61.2 54 46.3
SMO358G0422 Selaginella moellendorffii HOM05D007525 ORTHO05D003398 9.4e-08 61.2 49 51.0
Medtr2g090630 Medicago truncatula HOM05D000003 ORTHO05D002335 4.6e-07 58.9 58 43.1
TPR.G27728 Trifolium pratense HOM05D000003 ORTHO05D002335 4.6e-07 58.9 58 43.1
TPR.G32089 Trifolium pratense HOM05D000003 ORTHO05D000004 3.0e-06 56.2 48 52.1
TPR.G10173 Trifolium pratense HOM05D000003 ORTHO05D002335 5.1e-06 55.5 55 41.8


User provided reference genes

Program Settings