Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr4g036835 Medicago truncatula HOM05D004234 ORTHO05D004670 8.4e-252 873.2 447 100.0
Psat7g159560 Pisum sativum HOM05D004234 ORTHO05D004670 6.5e-212 740.7 455 84.8
Medtr1g056720 Medicago truncatula HOM05D004234 ORTHO05D004670 2.2e-204 715.7 447 84.6
Glyma.09G229600 Glycine max HOM05D004234 ORTHO05D004670 6.1e-202 707.6 446 82.5
Ca_25531_v3 Cicer arietinum L. HOM05D004234 ORTHO05D004670 1.1e-198 696.8 448 82.1
Phvul.011G007500 Phaseolus vulgaris HOM05D004234 ORTHO05D004670 6.5e-196 687.6 446 80.0
Lj3g0001566 Lotus japonicus HOM05D004234 ORTHO05D004670 9.7e-192 673.7 438 81.1
arahy.Tifrunner.gnm1.ann1.WXBJ4D Arachis hypogaea HOM05D004234 ORTHO05D004670 2.4e-190 669.1 442 80.8
arahy.Tifrunner.gnm1.ann1.11333K Arachis hypogaea HOM05D004234 ORTHO05D004670 1.2e-189 666.8 446 80.0
VMungo1127G0923 Vigna mungo HOM05D004234 ORTHO05D004670 1.2e-189 666.8 433 79.4
Glyma.12G006700 Glycine max HOM05D004234 ORTHO05D004670 2.2e-188 662.5 448 78.6
Lalb_Chr01g0000341 Lupinus albus HOM05D004234 ORTHO05D004670 2.9e-188 662.1 442 79.9
QL09p005405 Quercus lobata HOM05D004234 ORTHO05D004670 2.7e-173 612.5 445 73.0
GSVIVG01014047001 Vitis vinifera HOM05D004234 ORTHO05D004670 5.0e-172 608.2 444 72.1
TWI39G0359 Tripterygium wilfordii HOM05D004234 ORTHO05D004670 5.5e-171 604.7 430 74.9
Nn6g33942 Nelumbo nucifera HOM05D004234 ORTHO05D004670 3.0e-169 599.0 449 71.5
Dinv06568 Davidia involucrata HOM05D004234 ORTHO05D004670 5.2e-169 598.2 443 72.0
Hma1.2p1_0432F.1_g151850 Hydrangea macrophylla HOM05D004234 ORTHO05D004670 9.8e-168 594.0 446 71.5
MD07G1252500 Malus domestica HOM05D004234 ORTHO05D004670 8.3e-167 590.9 413 75.3
Thecc.03G153900 Theobroma cacao HOM05D004234 ORTHO05D004670 1.1e-166 590.5 439 72.2
CSS0018772 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 1.8e-166 589.7 434 72.1
MD01G1182200 Malus domestica HOM05D004234 ORTHO05D004670 1.8e-166 589.7 413 75.3
RcHm_v2.0_Chr1g0331961 Rosa chinensis HOM05D004234 ORTHO05D004670 2.4e-166 589.3 448 70.8
COL.COLO4_14105 Corchorus olitorius HOM05D004234 ORTHO05D004670 7.8e-165 584.3 440 71.8
Gohir.D03G106600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.0e-164 583.9 422 73.9
PGR042G3222 Punica granatum HOM05D004234 ORTHO05D004670 1.3e-164 583.6 452 69.9
Manes.06G133800 Manihot esculenta HOM05D004234 ORTHO05D004670 2.3e-164 582.8 450 69.8
Gohir.A03G059300 Gossypium hirsutum HOM05D004234 ORTHO05D004670 2.9e-164 582.4 455 69.5
Potri.001G125700 Populus trichocarpa HOM05D004234 ORTHO05D004670 1.9e-163 579.7 458 69.2
Potri.003G108000 Populus trichocarpa HOM05D004234 ORTHO05D004670 1.2e-162 577.0 451 69.4
Prupe.2G276000 Prunus persica HOM05D004234 ORTHO05D004670 1.2e-162 577.0 415 73.0
TAR636G1879 Trochodendron aralioides HOM05D004234 ORTHO05D004670 2.1e-162 576.2 440 71.4
Lj1A979T78 Lonicera japonica HOM05D004234 ORTHO05D004670 3.6e-162 575.5 421 72.7
CsaV3_3G050070 Cucumis sativus L. HOM05D004234 ORTHO05D004670 4.7e-162 575.1 434 70.5
DCAR_014620 Daucus carota HOM05D004234 ORTHO05D004670 1.0e-161 573.9 442 69.9
FvH4_7g05310 Fragaria vesca HOM05D004234 ORTHO05D004670 1.0e-161 573.9 427 71.7
FAN03G3162 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.0e-161 573.9 427 71.7
Sed0010040 Sechium edule HOM05D004234 ORTHO05D004670 1.8e-161 573.2 472 66.3
Sopen03g024080 Solanum pennellii HOM05D004234 ORTHO05D004670 2.3e-161 572.8 448 67.6
Actinidia13581 Actinidia chinensis HOM05D004234 ORTHO05D004670 3.1e-161 572.4 458 67.9
Eucgr.H04780 Eucalyptus grandis HOM05D004234 ORTHO05D004670 1.5e-160 570.1 435 70.8
FAN10G4258 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.5e-160 570.1 427 71.2
ClCG09G013080 Citrullus lanatus HOM05D004234 ORTHO05D004670 3.4e-160 568.9 449 68.2
Actinidia31776 Actinidia chinensis HOM05D004234 ORTHO05D004670 5.8e-160 568.2 443 69.8
Sabra03G0074900 Salix brachista HOM05D004234 ORTHO05D004670 5.8e-160 568.2 439 69.7
SalBow8G0184 Salvia bowleyana HOM05D004234 ORTHO05D004670 2.9e-159 565.8 452 69.2
SalBow8G4519 Salvia bowleyana HOM05D004234 ORTHO05D004670 2.9e-159 565.8 452 69.2
Solyc03g093300.3 Solanum lycopersicum HOM05D004234 ORTHO05D004670 3.7e-159 565.5 437 68.2
Ciclev10004769m.g Citrus clementina HOM05D004234 ORTHO05D004670 1.1e-158 563.9 447 66.9
Aqoxy5G04150 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 1.4e-158 563.5 452 69.7
Duzib084G1335 Durio zibethinus HOM05D004234 ORTHO05D004670 1.9e-158 563.1 436 70.2
Aqoxy1G01638 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 2.4e-158 562.8 452 69.7
Oeu028187.2 Olea europaea HOM05D004234 ORTHO05D004670 2.4e-158 562.8 453 68.9
Gorai.003G113100 Gossypium raimondii HOM05D004234 ORTHO05D004670 4.1e-158 562.0 434 69.8
Migut.F00484 Erythranthe guttata HOM05D004234 ORTHO05D004670 4.6e-157 558.5 414 70.5
Atru.chr1.756 Acer truncatum HOM05D004234 ORTHO05D004670 1.0e-156 557.4 448 67.9
PSO238G0034 Papaver somniferum HOM05D004234 ORTHO05D004670 3.0e-156 555.8 451 66.3
Gohir.A12G198000 Gossypium hirsutum HOM05D004234 ORTHO05D004670 3.9e-156 555.4 436 67.4
Sed0020354 Sechium edule HOM05D004234 ORTHO05D004670 5.0e-156 555.1 412 70.6
AT5G61450 Arabidopsis thaliana HOM05D004234 ORTHO05D004670 1.5e-155 553.5 426 69.0
AL8G38140 Arabidopsis lyrata HOM05D004234 ORTHO05D004670 2.5e-155 552.7 426 69.2
HanXRQChr05g0142531 Helianthus annuus HOM05D004234 ORTHO05D004670 3.3e-155 552.4 452 65.9
ECA233G5771 Erigeron canadensis HOM05D004234 ORTHO05D004670 4.3e-155 552.0 411 70.3
Gohir.D12G200600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 5.6e-155 551.6 406 70.4
Gorai.008G215700 Gossypium raimondii HOM05D004234 ORTHO05D004670 5.6e-155 551.6 406 70.4
AUR62015488 Chenopodium quinoa HOM05D004234 ORTHO05D004670 7.3e-155 551.2 481 63.8
Cc02_g04370 Coffea canephora HOM05D004234 ORTHO05D004670 1.6e-154 550.1 457 66.7
Sc19g0002070 Simmondsia chinensis HOM05D004234 ORTHO05D004670 4.7e-154 548.5 429 69.5
unitig_46.g18765 Utricularia gibba HOM05D004234 ORTHO05D004670 4.7e-154 548.5 447 67.6
MELO3C003311.2 Cucumis melo HOM05D004234 ORTHO05D004670 6.2e-154 548.1 507 61.3
HPP92_020352 Vanilla planifolia HOM05D004234 ORTHO05D004670 6.2e-154 548.1 440 68.9
Nitab4.5_0002816g0120 Nicotiana tabacum HOM05D004234 ORTHO05D004670 1.1e-153 547.4 445 67.6
Carub.0008s2213 Capsella rubella HOM05D004234 ORTHO05D004670 2.3e-153 546.2 431 68.0
SGA_v2.0_scaffold2G01218 Striga asiatica HOM05D004234 ORTHO05D004670 8.9e-153 544.3 465 66.7
Peaxi162Scf00241g00030 Petunia axillaris HOM05D004234 ORTHO05D004670 1.2e-152 543.9 438 66.4
Nn1g00980 Nelumbo nucifera HOM05D004234 ORTHO05D004670 1.5e-152 543.5 445 68.1
ATR0317G048 Amborella trichopoda HOM05D004234 ORTHO05D004670 1.7e-151 540.0 456 64.9
Thhalv10004229m.g Eutrema salsugineum HOM05D004234 ORTHO05D004670 4.1e-150 535.4 448 65.4
Sp2g24650 Schrenkiella parvula HOM05D004234 ORTHO05D004670 7.0e-150 534.6 438 66.4
Lsat_1_v5_gn_1_117561 Lactuca sativa HOM05D004234 ORTHO05D004670 6.0e-149 531.6 450 66.0
C07p45120 Brassica napus HOM05D004234 ORTHO05D004670 1.5e-147 526.9 453 64.7
BcaC06g33234 Brassica carinata HOM05D004234 ORTHO05D004670 4.3e-147 525.4 453 64.5
Prupe.2G276100 Prunus persica HOM05D004234 ORTHO05D004670 4.3e-147 525.4 408 66.7
A03p47040 Brassica napus HOM05D004234 ORTHO05D004670 5.6e-147 525.0 450 64.4
BraA03t13827Z Brassica rapa HOM05D004234 ORTHO05D004670 5.6e-147 525.0 450 64.4
BolC7t45034H Brassica oleracea HOM05D004234 ORTHO05D004670 7.3e-147 524.6 445 64.0
Os03g0102400 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 1.2e-146 523.9 405 69.4
Zm00001eb404400 Zea mays HOM05D004234 ORTHO05D004670 5.2e-145 518.5 415 68.0
Hund11832 Selenicereus undatus HOM05D004234 ORTHO05D004670 1.5e-144 516.9 426 66.9
Os07g0466200 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 1.3e-143 513.8 407 67.8
PSO210G3536 Papaver somniferum HOM05D004234 ORTHO05D004670 1.7e-143 513.5 451 63.0
Lsat_1_v5_gn_9_51980 Lactuca sativa HOM05D004234 ORTHO05D004670 3.7e-143 512.3 429 66.7
BcaC06g33149 Brassica carinata HOM05D004234 ORTHO05D004670 4.9e-143 511.9 445 63.8
Rhsim09G0190900 Rhododendron simsii HOM05D004234 ORTHO05D004670 1.1e-142 510.8 565 55.0
Ah.07g207720 Amaranthus hybridus HOM05D004234 ORTHO05D004670 3.9e-140 502.3 461 62.0
EL10Ac3g05852 Beta vulgaris HOM05D004234 ORTHO05D004670 3.6e-138 495.7 442 63.1
Aa31LG11G1950 Aethionema arabicum HOM05D004234 ORTHO05D004670 1.4e-137 493.8 442 62.2
MD07G1252600 Malus domestica HOM05D004234 ORTHO05D004670 2.2e-135 486.5 391 66.0
Nitab4.5_0003490g0020 Nicotiana tabacum HOM05D004234 ORTHO05D004670 5.4e-134 481.9 414 64.5
Mapoly0072s0015 Marchantia polymorpha HOM05D004234 ORTHO05D004670 3.5e-133 479.2 488 54.9
Pp3c2_13380 Physcomitrium patens HOM05D004234 ORTHO05D004670 2.4e-129 466.5 408 61.8
Pp3c17_11550 Physcomitrium patens HOM05D004234 ORTHO05D004670 2.0e-128 463.4 409 61.9
RcHm_v2.0_Chr1g0374151 Rosa chinensis HOM05D004234 ORTHO05D004670 2.0e-128 463.4 406 59.4
Pp3c14_12080 Physcomitrium patens HOM05D004234 ORTHO05D004670 5.8e-128 461.8 410 62.4
Lsat_1_v5_gn_8_8740 Lactuca sativa HOM05D004234 ORTHO05D004670 1.3e-127 460.7 463 58.3
FvH4_7g27310 Fragaria vesca HOM05D004234 ORTHO05D004670 6.4e-127 458.4 405 59.5
CiPaw.04G059200 Carya illinoinensis HOM05D004234 ORTHO05D004670 1.4e-126 457.2 326 74.2
Duzib205G0275 Durio zibethinus HOM05D004234 ORTHO05D004670 4.2e-126 455.7 377 66.3
AUR62002211 Chenopodium quinoa HOM05D004234 ORTHO05D004670 7.1e-126 454.9 393 65.1
FAN06G0557 Fragaria x ananassa HOM05D004234 ORTHO05D004670 9.3e-126 454.5 405 59.3
AagrBONN_evm.TU.Sc2ySwM_117.258 Anthoceros agrestis HOM05D004234 ORTHO05D004670 6.0e-125 451.8 464 56.5
FAN01G2714 Fragaria x ananassa HOM05D004234 ORTHO05D004670 6.6e-124 448.4 427 59.5
CAN.G48.41 Capsicum annuum HOM05D004234 ORTHO05D004670 1.4e-121 440.7 410 60.2
Lsat_1_v5_gn_1_117520 Lactuca sativa HOM05D004234 ORTHO05D004670 3.2e-118 429.5 435 57.9
Nitab4.5_0000262g0110 Nicotiana tabacum HOM05D004234 ORTHO05D004670 6.0e-117 425.2 410 58.8
SMO357G0012 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 7.9e-117 424.9 415 56.6
FAN03G0204 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.3e-116 423.3 417 56.6
Peaxi162Scf00304g01343 Petunia axillaris HOM05D004234 ORTHO05D004670 4.3e-115 419.1 387 60.2
FAN06G1565 Fragaria x ananassa HOM05D004234 ORTHO05D004670 8.4e-111 404.8 368 58.4
CAN.G330.4 Capsicum annuum HOM05D004234 ORTHO05D004670 1.9e-107 393.7 358 59.5
FAN10G3280 Fragaria x ananassa HOM05D002503 ORTHO05D004670 7.4e-107 391.7 372 57.5
FAN03G2107 Fragaria x ananassa HOM05D002503 ORTHO05D004670 1.6e-106 390.6 374 56.7
Lj8A43G57 Lonicera japonica HOM05D004234 ORTHO05D004670 1.4e-105 387.5 381 57.5
C07p40880 Brassica napus HOM05D004234 ORTHO05D004670 2.0e-104 383.6 377 57.8
BolC7t44614H Brassica oleracea HOM05D004234 ORTHO05D004670 2.3e-100 370.2 377 56.0
CBR_g12525 Chara braunii HOM05D004234 ORTHO05D004670 2.0e-96 357.1 581 41.3
BcaNung02453 Brassica carinata HOM05D004234 ORTHO05D004670 8.8e-92 341.7 350 54.9
FAN10G1071 Fragaria x ananassa HOM05D004234 ORTHO05D004670 3.1e-89 333.2 402 50.2
arahy.Tifrunner.gnm1.ann1.EHKS3S Arachis hypogaea HOM05D004234 ORTHO05D004670 5.0e-87 325.9 302 60.9
Sabra01G0096800 Salix brachista HOM05D004234 ORTHO05D004670 3.2e-86 323.2 293 62.1
SMO203G0101 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 2.1e-85 320.5 317 55.2
Solyc06g034180.2 Solanum lycopersicum HOM05D004234 ORTHO05D004670 2.1e-85 320.5 333 54.1
PGSC0003DMG400021593 Solanum tuberosum HOM05D004234 ORTHO05D004670 5.0e-79 299.3 371 48.2
CARHR275210 Cardamine hirsuta HOM05D004234 ORTHO05D004670 6.1e-77 292.4 281 58.4
Nitab4.5_0000448g0090 Nicotiana tabacum HOM05D004234 ORTHO05D004670 9.7e-67 258.5 294 51.7
Lsat_1_v5_gn_1_117540 Lactuca sativa HOM05D004234 ORTHO05D004670 6.3e-66 255.8 286 52.8
Cpa.g.sc4200.1 Carica papaya HOM05D004234 ORTHO05D004670 8.0e-61 238.8 121 95.9
SHI13981 Sapria himalayana HOM05D004234 ORTHO05D004670 4.5e-56 223.0 252 53.6
vmacro09913 Vaccinium macrocarpon HOM05D004234 ORTHO05D004670 7.7e-56 222.2 254 55.5
CSS0026342 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 1.5e-46 191.4 129 79.1
Cre03.g201000 Chlamydomonas reinhardtii HOM05D004234 ORTHO05D004670 3.3e-46 190.3 322 35.7
arahy.Tifrunner.gnm1.ann1.J8KP6L Arachis hypogaea HOM05D004234 ORTHO05D004670 2.1e-45 187.6 150 72.0
Haze_13877 Corylus avellana HOM05D004234 ORTHO05D004670 2.8e-45 187.2 191 55.5
Sopen06g015930 Solanum pennellii HOM05D004234 ORTHO05D000001 1.0e-44 185.3 103 84.5
arahy.Tifrunner.gnm1.ann1.AYL6ZU Arachis hypogaea HOM05D004234 ORTHO05D004670 2.2e-42 177.6 155 69.0
Cpa.g.c29748.2 Carica papaya HOM05D004234 ORTHO05D004670 4.1e-33 146.7 98 80.6
FvH4_2g12100 Fragaria vesca HOM05D004234 ORTHO05D004670 2.5e-30 137.5 99 69.7
arahy.Tifrunner.gnm1.ann1.F7NEP8 Arachis hypogaea HOM05D004234 ORTHO05D004670 6.2e-29 132.9 99 74.7
FvH4_c2g00051 Fragaria vesca HOM05D004234 ORTHO05D004670 1.2e-27 128.6 174 44.8
FvH4_3g27272 Fragaria vesca HOM05D004234 ORTHO05D004670 4.6e-24 116.7 167 43.1
BolC1t03363H Brassica oleracea HOM05D004234 ORTHO05D004670 6.6e-23 112.8 71 74.6
SEGI_04441 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 6.6e-23 112.8 82 75.6
SEGI_30601 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 4.7e-21 106.7 58 89.7
Haze_13878 Corylus avellana HOM05D004234 ORTHO05D004670 6.2e-21 106.3 69 75.4
Cpa.g.sc111.54 Carica papaya HOM05D004234 ORTHO05D004670 4.0e-20 103.6 151 44.4
Dinv16843 Davidia involucrata HOM05D004234 ORTHO05D004670 4.0e-20 103.6 66 75.8
Migut.L01142 Erythranthe guttata HOM05D004234 ORTHO05D004670 5.8e-19 99.8 98 55.1
Gorai.011G181500 Gossypium raimondii HOM05D001733 ORTHO05D004670 4.9e-18 96.7 51 86.3
FvH4_5g28373 Fragaria vesca HOM05D004234 ORTHO05D004670 1.1e-17 95.5 207 34.3
SEGI_33806 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 1.9e-17 94.7 54 79.6
Gorai.009G415200 Gossypium raimondii HOM05D004234 ORTHO05D004670 2.1e-16 91.3 51 84.3
Gorai.012G056500 Gossypium raimondii HOM05D004234 ORTHO05D004670 1.0e-15 89.0 51 82.4
Lsat_1_v5_gn_5_94641 Lactuca sativa HOM05D004234 ORTHO05D004670 2.3e-15 87.8 61 68.9
Gohir.D04G050932 Gossypium hirsutum HOM05D004234 ORTHO05D004670 3.9e-15 87.0 55 76.4
Actinidia24997 Actinidia chinensis HOM05D004234 ORTHO05D004670 6.6e-15 86.3 78 61.5
Gohir.D11G243650 Gossypium hirsutum HOM05D001733 ORTHO05D004670 1.6e-13 81.6 51 76.5
SEGI_09779 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 5.3e-12 76.6 75 58.7
arahy.Tifrunner.gnm1.ann1.10JCRR Arachis hypogaea HOM05D000690 ORTHO05D006934 6.4e-10 69.7 87 55.2
PRCOL_00000881 Prasinoderma coloniale HOM05D004234 ORTHO05D004670 8.4e-10 69.3 81 54.3
Peaxi162Scf00304g01326 Petunia axillaris HOM05D004234 ORTHO05D004670 7.1e-09 66.2 44 75.0
Nitab4.5_0003490g0040 Nicotiana tabacum HOM05D004234 ORTHO05D004670 1.2e-08 65.5 42 71.4
TAR633G1805 Trochodendron aralioides HOM05D003179 ORTHO05D003563 4.6e-08 63.5 351 24.2
EL10Ac9g22565 Beta vulgaris HOM05D003179 ORTHO05D003563 1.0e-07 62.4 332 22.3
Rhsim06G0134300 Rhododendron simsii HOM05D000157 ORTHO05D000311 1.0e-07 62.4 36 86.1
AUR62022769 Chenopodium quinoa HOM05D003179 ORTHO05D003563 2.3e-07 61.2 306 23.9
MBI13_g15298_MAGBIO Magnolia biondii HOM05D003179 ORTHO05D003563 5.1e-07 60.1 304 24.3
Pp3c2_7230 Physcomitrium patens HOM05D003179 ORTHO05D003563 5.1e-07 60.1 314 23.6
AUR62029221 Chenopodium quinoa HOM05D003179 ORTHO05D003563 1.9e-06 58.2 304 23.7
SEGI_21143 Sequoiadendron giganteum HOM05D003179 ORTHO05D003563 2.5e-06 57.8 299 22.7
Rhsim01G0212600 Rhododendron simsii HOM05D003179 ORTHO05D003563 4.3e-06 57.0 306 22.9
PSO063G1289 Papaver somniferum HOM05D003179 ORTHO05D003563 9.6e-06 55.8 304 22.0


User provided reference genes

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