Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr4g036675 Medicago truncatula HOM05D006034 ORTHO05D007535 2.2e-172 609.0 333 100.0
TPR.G35498 Trifolium pratense HOM05D006034 ORTHO05D007535 6.0e-146 521.2 335 87.2
Lj2g0022455 Lotus japonicus HOM05D006034 ORTHO05D007535 1.1e-139 500.4 335 78.2
Glyma.07G128800 Glycine max HOM05D006034 ORTHO05D007535 2.3e-137 492.7 334 80.8
Psat1g049600 Pisum sativum HOM05D006034 ORTHO05D007535 6.9e-126 454.5 240 90.0
VMungo0464G0679 Vigna mungo HOM05D006034 ORTHO05D007535 1.3e-124 450.3 316 79.1
Lalb_Chr24g0393801 Lupinus albus HOM05D006034 ORTHO05D007535 7.1e-123 444.5 310 78.7
arahy.Tifrunner.gnm1.ann1.JYMB6X Arachis hypogaea HOM05D006034 ORTHO05D007535 8.2e-119 431.0 340 72.1
arahy.Tifrunner.gnm1.ann1.VJWZ4U Arachis hypogaea HOM05D006034 ORTHO05D007535 8.2e-119 431.0 340 71.8
Migut.J00593 Erythranthe guttata HOM05D006034 ORTHO05D007535 1.9e-107 393.3 296 63.5
HanXRQChr12g0354751 Helianthus annuus HOM05D006034 ORTHO05D007535 2.1e-106 389.8 306 60.8
Ciclev10008848m.g Citrus clementina HOM05D006034 ORTHO05D007535 4.7e-106 388.7 335 60.9
Gohir.A06G071400 Gossypium hirsutum HOM05D006034 ORTHO05D007535 7.9e-106 387.9 309 64.1
Potri.006G150200 Populus trichocarpa HOM05D006034 ORTHO05D007535 7.9e-106 387.9 300 65.3
GSVIVG01015225001 Vitis vinifera HOM05D006034 ORTHO05D007535 1.0e-105 387.5 240 75.8
TAR636G0081 Trochodendron aralioides HOM05D006034 ORTHO05D007535 3.9e-105 385.6 238 75.6
CiPaw.03G217800 Carya illinoinensis HOM05D006034 ORTHO05D007535 5.1e-105 385.2 339 62.2
COL.COLO4_18220 Corchorus olitorius HOM05D006034 ORTHO05D001756 4.4e-104 382.1 240 75.0
Gorai.010G081700 Gossypium raimondii HOM05D006034 ORTHO05D007535 3.7e-103 379.0 325 62.5
Gohir.D06G070100 Gossypium hirsutum HOM05D006034 ORTHO05D007535 6.3e-103 378.3 309 63.8
Cc06_g11190 Coffea canephora HOM05D006034 ORTHO05D007535 8.2e-103 377.9 236 73.7
MD02G1076200 Malus domestica HOM05D006034 ORTHO05D007535 1.4e-102 377.1 295 66.8
PGSC0003DMG400000341 Solanum tuberosum HOM05D006034 ORTHO05D007535 1.3e-100 370.5 240 71.2
ECA234G0840 Erigeron canadensis HOM05D006034 ORTHO05D001756 2.9e-100 369.4 240 72.1
MD15G1204600 Malus domestica HOM05D006034 ORTHO05D007535 5.0e-100 368.6 285 66.7
MELO3C015455.2 Cucumis melo HOM05D006034 ORTHO05D007535 7.2e-99 364.8 237 69.6
SGA_v2.0_scaffold62G21594 Striga asiatica HOM05D006034 ORTHO05D007535 7.2e-99 364.8 240 70.8
Lsat_1_v5_gn_5_145641 Lactuca sativa HOM05D006034 ORTHO05D007535 1.2e-98 364.0 240 71.7
RcHm_v2.0_Chr2g0093061 Rosa chinensis HOM05D006034 ORTHO05D007535 2.1e-98 363.2 240 69.2
FvH4_1g22100 Fragaria vesca HOM05D006034 ORTHO05D007535 3.6e-98 362.5 299 58.9
FAN19G2130 Fragaria x ananassa HOM05D006034 ORTHO05D007535 3.6e-98 362.5 299 58.9
QL02p062983 Quercus lobata HOM05D006034 ORTHO05D007535 1.8e-97 360.1 276 63.4
Prupe.7G212400 Prunus persica HOM05D006034 ORTHO05D007535 3.0e-97 359.4 240 72.1
Sed0009633 Sechium edule HOM05D006034 ORTHO05D007535 3.0e-97 359.4 240 68.8
FAN26G1667 Fragaria x ananassa HOM05D006034 ORTHO05D007535 3.9e-97 359.0 299 61.9
Aqoxy7G04066 Aquilegia oxysepala HOM05D006034 ORTHO05D007535 2.6e-96 356.3 313 56.9
AUR62031326 Chenopodium quinoa HOM05D006034 ORTHO05D007535 2.6e-96 356.3 238 68.9
FAN23G1099 Fragaria x ananassa HOM05D006034 ORTHO05D007535 1.4e-94 350.5 239 67.4
Eucgr.C00910 Eucalyptus grandis HOM05D006034 ORTHO05D007535 2.4e-94 349.7 293 59.4
CAN.G1241.18 Capsicum annuum HOM05D006034 ORTHO05D007535 4.1e-94 349.0 240 68.3
Mapoly0014s0071 Marchantia polymorpha HOM05D006034 ORTHO05D007535 2.6e-93 346.3 293 56.3
Sopen12g003720 Solanum pennellii HOM05D006034 ORTHO05D007535 5.9e-93 345.1 238 66.4
Lj7C673T11 Lonicera japonica HOM05D006034 ORTHO05D007535 1.5e-91 340.5 240 67.1
Glyma.01G003200 Glycine max HOM05D006034 ORTHO05D007535 1.9e-91 340.1 206 77.2
THA.LOC104807985 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 1.9e-91 340.1 323 58.2
PSO210G3620 Papaver somniferum HOM05D006034 ORTHO05D007535 2.5e-91 339.7 239 66.1
Manes.03G032201 Manihot esculenta HOM05D006034 ORTHO05D007535 7.2e-91 338.2 240 66.7
SEGI_04673 Sequoiadendron giganteum HOM05D006034 ORTHO05D007535 9.4e-91 337.8 234 66.7
HPP92_023401 Vanilla planifolia HOM05D006034 ORTHO05D007535 1.2e-90 337.4 234 65.4
PSO210G1139 Papaver somniferum HOM05D006034 ORTHO05D007535 2.1e-90 336.7 239 65.7
Carub.0007s1101 Capsella rubella HOM05D006034 ORTHO05D007535 7.5e-88 328.2 299 57.9
Ca_25619_v3 Cicer arietinum L. HOM05D006034 ORTHO05D007535 7.5e-88 328.2 234 79.5
ATR0705G153 Amborella trichopoda HOM05D006034 ORTHO05D007535 9.7e-88 327.8 325 52.3
TWI32G0461 Tripterygium wilfordii HOM05D006034 ORTHO05D007535 6.3e-87 325.1 295 60.7
PGR142G3838 Punica granatum HOM05D006034 ORTHO05D007535 2.4e-86 323.2 321 55.1
Sabra06G0118900 Salix brachista HOM05D006034 ORTHO05D007535 9.1e-86 321.2 300 55.0
Os01g0722100 Oryza sativa ssp. japonica HOM05D006034 ORTHO05D007535 4.5e-85 318.9 237 63.3
CsaV3_1G040270 Cucumis sativus L. HOM05D006034 ORTHO05D007535 1.3e-84 317.4 200 72.5
Pp3c5_18660 Physcomitrium patens HOM05D006034 ORTHO05D007535 6.5e-84 315.1 295 55.3
Zm00001eb361670 Zea mays HOM05D006034 ORTHO05D007535 6.5e-84 315.1 239 62.8
SMO118G0489 Selaginella moellendorffii HOM05D006034 ORTHO05D007535 1.9e-83 313.5 231 62.8
MSTRG.19527 Avicennia marina HOM05D006034 ORTHO05D007535 7.2e-83 311.6 205 70.7
Actinidia25263 Actinidia chinensis HOM05D006034 ORTHO05D007535 9.4e-83 311.2 211 70.1
Oeu021834.2 Olea europaea HOM05D006034 ORTHO05D007535 4.7e-82 308.9 240 62.9
SalBow6G0258 Salvia bowleyana HOM05D006034 ORTHO05D007535 6.1e-82 308.5 297 62.3
C03p89230 Brassica napus HOM05D006034 ORTHO05D007535 7.5e-80 301.6 240 63.8
BolC3t21232H Brassica oleracea HOM05D006034 ORTHO05D007535 1.7e-79 300.4 240 63.3
FAN28G0362 Fragaria x ananassa HOM05D006034 ORTHO05D007535 1.7e-79 300.4 193 71.5
CARHR237370 Cardamine hirsuta HOM05D006034 ORTHO05D007535 3.7e-79 299.3 240 62.5
Sp7g27400 Schrenkiella parvula HOM05D006034 ORTHO05D007535 3.7e-79 299.3 240 62.9
A08p19610 Brassica napus HOM05D006034 ORTHO05D007535 4.1e-78 295.8 240 62.5
BraA08t33919Z Brassica rapa HOM05D006034 ORTHO05D007535 5.4e-78 295.4 240 62.5
AL7G22860 Arabidopsis lyrata HOM05D006034 ORTHO05D007535 7.0e-78 295.0 236 62.3
BcaC01g01176 Brassica carinata HOM05D006034 ORTHO05D007535 9.1e-78 294.7 240 62.1
BcaB03g12611 Brassica carinata HOM05D006034 ORTHO05D007535 1.2e-77 294.3 240 61.7
Hma1.2p1_0800F.1_g219990 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 1.2e-77 294.3 212 67.0
Thecc.09G091900 Theobroma cacao HOM05D006034 ORTHO05D007535 8.6e-76 288.1 206 67.5
THA.LOC104827538 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 3.3e-75 286.2 296 54.4
CBR_g36936 Chara braunii HOM05D006034 ORTHO05D007535 8.0e-74 281.6 234 59.0
Aa31LG2G20940 Aethionema arabicum HOM05D006034 ORTHO05D007535 6.8e-73 278.5 380 50.8
Duzib150G0162 Durio zibethinus HOM05D006034 ORTHO05D007535 1.7e-71 273.9 279 57.3
AagrBONN_evm.TU.Sc2ySwM_228.1841 Anthoceros agrestis HOM05D006034 ORTHO05D007535 2.7e-69 266.5 263 52.9
BcaC09g51741 Brassica carinata HOM05D000577 ORTHO05D007535 2.3e-68 263.5 241 56.8
EL10Ac8g19307 Beta vulgaris HOM05D006034 ORTHO05D007535 6.6e-68 261.9 175 69.7
Phvul.004G171500 Phaseolus vulgaris HOM05D006034 ORTHO05D007535 7.3e-67 258.5 194 79.4
Solyc12g008790.3 Solanum lycopersicum HOM05D006034 ORTHO05D007535 2.0e-64 250.4 171 66.7
ClCG03G015740 Citrullus lanatus HOM05D000085 ORTHO05D001756 4.9e-63 245.7 240 52.1
CsaV3_UNG066530 Cucumis sativus L. HOM05D006034 ORTHO05D007535 2.0e-61 240.4 174 63.2
Thhalv10025613m.g Eutrema salsugineum HOM05D006034 ORTHO05D007535 5.0e-60 235.7 311 45.0
AUR62027411 Chenopodium quinoa HOM05D006034 ORTHO05D007535 1.1e-57 228.0 190 57.4
Atru.chr7.1566 Acer truncatum HOM05D006034 ORTHO05D007535 5.8e-56 222.2 172 64.0
vmacro17221 Vaccinium macrocarpon HOM05D006034 ORTHO05D007535 1.7e-55 220.7 337 40.1
Nn8g38904 Nelumbo nucifera HOM05D006034 ORTHO05D007535 8.3e-55 218.4 240 47.1
Sed0024135 Sechium edule HOM05D006034 ORTHO05D007535 8.3e-55 218.4 137 71.5
CDE05G1399 Ceratophyllum demersum HOM05D006034 ORTHO05D007535 2.7e-53 213.4 233 47.6
Nitab4.5_0000540g0250 Nicotiana tabacum HOM05D006034 ORTHO05D007535 7.8e-53 211.8 232 48.3
Haze_25892 Corylus avellana HOM05D006034 ORTHO05D007535 3.0e-52 209.9 321 43.9
Nitab4.5_0011903g0020 Nicotiana tabacum HOM05D006034 ORTHO05D007535 2.8e-50 203.4 239 46.0
MD13G1273400 Malus domestica HOM05D006034 ORTHO05D007535 4.7e-50 202.6 156 62.8
PRCOL_00006271 Prasinoderma coloniale HOM05D006034 ORTHO05D007535 3.4e-48 196.4 289 43.6
Hund24744 Selenicereus undatus HOM05D006034 ORTHO05D007535 7.6e-48 195.3 289 41.2
THA.LOC104814611 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 4.6e-45 186.0 118 74.6
Sc18g0001930 Simmondsia chinensis HOM05D006034 ORTHO05D007535 7.8e-45 185.3 171 55.0
TWI34G0201 Tripterygium wilfordii HOM05D006034 ORTHO05D007535 1.0e-44 184.9 107 78.5
C01p09780 Brassica napus HOM05D006034 ORTHO05D007535 3.9e-44 183.0 231 45.5
Hma1.2p1_0800F.1_g219980 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 3.9e-44 183.0 108 79.6
Rhsim05G0022600 Rhododendron simsii HOM05D000085 ORTHO05D001756 4.3e-43 179.5 238 43.7
DCAR_011988 Daucus carota HOM05D006034 ORTHO05D007535 7.1e-38 162.2 233 41.6
MBI01_g02257_MAGBIO Magnolia biondii HOM05D006034 ORTHO05D007535 5.1e-36 156.0 325 34.8
Peaxi162Scf00498g00128 Petunia axillaris HOM05D006034 ORTHO05D007535 1.1e-35 154.8 147 53.1
arahy.Tifrunner.gnm1.ann1.9T8A1S Arachis hypogaea HOM05D006034 ORTHO05D007535 4.3e-35 152.9 91 79.1
arahy.Tifrunner.gnm1.ann1.ZF8ARW Arachis hypogaea HOM05D006034 ORTHO05D007535 5.6e-35 152.5 91 80.2
arahy.Tifrunner.gnm1.ann1.N9NTP8 Arachis hypogaea HOM05D000344 ORTHO05D005296 9.6e-35 151.8 91 80.2
arahy.Tifrunner.gnm1.ann1.4X02I9 Arachis hypogaea HOM05D006034 ORTHO05D007535 1.8e-33 147.5 91 78.0
CSS0007101 Camellia sinensis var. sinensis HOM05D006034 ORTHO05D007535 2.0e-32 144.1 97 72.2
BcaC09g52218 Brassica carinata HOM05D006034 ORTHO05D007535 2.2e-31 140.6 153 51.0
C01p09940 Brassica napus HOM05D000577 ORTHO05D007535 1.4e-30 137.9 241 38.2
Ca_29456_v3 Cicer arietinum L. HOM05D003386 ORTHO05D007535 2.7e-29 133.7 281 33.8
C01p09900 Brassica napus HOM05D006034 ORTHO05D007535 5.6e-27 125.9 118 57.6
CSS0015474 Camellia sinensis var. sinensis HOM05D006034 ORTHO05D007535 2.6e-24 117.1 123 47.2
BolC1t00956H Brassica oleracea HOM05D000577 ORTHO05D001093 6.4e-23 112.5 241 34.9
AT4G29540 Arabidopsis thaliana HOM05D006034 ORTHO05D007535 8.4e-23 112.1 71 74.6
THA.LOC109116077 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 7.1e-22 109.0 97 55.7
arahy.Tifrunner.gnm1.ann1.UHY7MZ Arachis hypogaea HOM05D006034 ORTHO05D005279 1.8e-20 104.4 73 72.6
MD17G1181800 Malus domestica HOM05D006034 ORTHO05D007535 3.9e-20 103.2 71 69.0
Haze_27155 Corylus avellana HOM05D003386 ORTHO05D007535 1.3e-18 98.2 221 33.5
arahy.Tifrunner.gnm1.ann1.RIAB4B Arachis hypogaea HOM05D006034 ORTHO05D007535 2.6e-16 90.5 50 86.0
Hma1.2p1_0800F.1_g220000 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 4.5e-16 89.7 68 64.7
arahy.Tifrunner.gnm1.ann1.C7GQ4M Arachis hypogaea HOM05D006034 ORTHO05D007535 1.1e-14 85.1 63 65.1
CsaV3_UNG066540 Cucumis sativus L. HOM05D006034 ORTHO05D007535 5.5e-14 82.8 65 56.9
BolC1t00940H Brassica oleracea HOM05D006034 ORTHO05D007535 6.2e-10 69.3 111 38.7
Dinv36751 Davidia involucrata HOM05D006034 ORTHO05D007535 6.9e-09 65.9 54 55.6
unitig_27.g24727 Utricularia gibba HOM05D006034 ORTHO05D007535 1.5e-08 64.7 38 71.1


User provided reference genes

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