Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 1.6e-262 909.1 515 100.0
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 2.5e-199 699.1 519 78.2
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 6.8e-197 691.0 521 75.2
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 1.6e-185 653.3 528 73.5
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 2.8e-182 642.5 527 75.0
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 2.1e-158 563.1 525 63.2
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 3.8e-155 552.4 533 62.7
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 2.7e-153 546.2 533 65.1
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 1.9e-151 540.0 531 64.2
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 2.6e-148 529.6 527 63.4
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 4.3e-143 512.3 525 60.8
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 1.4e-138 497.3 559 58.9
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 7.9e-129 464.9 530 55.3
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 2.2e-123 446.8 559 52.2
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 1.4e-120 437.6 558 54.3
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 1.5e-119 434.1 551 52.3
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 3.3e-119 433.0 561 50.4
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 5.7e-119 432.2 564 53.9
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 3.7e-118 429.5 535 57.2
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 6.3e-118 428.7 534 55.1
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 3.1e-117 426.4 553 54.1
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 5.3e-117 425.6 532 57.3
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 3.4e-116 422.9 544 54.6
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 5.9e-116 422.2 565 52.9
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 1.3e-115 421.0 557 48.8
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 1.3e-115 421.0 561 52.9
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 5.0e-115 419.1 556 48.0
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 1.1e-114 417.9 556 47.8
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 3.2e-114 416.4 557 48.5
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 3.2e-114 416.4 556 48.0
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 3.2e-114 416.4 572 51.4
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 3.2e-114 416.4 557 54.6
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 4.2e-114 416.0 565 52.2
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 4.7e-113 412.5 556 50.5
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 6.1e-113 412.1 557 52.1
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 1.4e-112 411.0 554 49.8
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 2.3e-112 410.2 570 48.8
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 1.1e-111 407.9 563 47.8
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 2.0e-111 407.1 558 47.7
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 4.4e-111 406.0 562 50.4
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.1e-109 401.4 589 47.9
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 1.2e-108 397.9 546 52.9
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 2.0e-108 397.1 562 49.6
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 2.6e-108 396.7 563 47.4
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 5.9e-108 395.6 562 52.5
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 2.9e-107 393.3 520 53.5
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 2.9e-107 393.3 555 48.8
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 2.9e-107 393.3 526 52.1
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 3.8e-107 392.9 533 53.8
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 3.8e-107 392.9 558 50.2
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 1.1e-106 391.3 550 52.5
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 2.5e-106 390.2 533 53.5
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 9.4e-106 388.3 553 47.4
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 1.6e-105 387.5 581 45.1
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 1.0e-104 384.8 550 51.3
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 3.0e-104 383.3 550 51.8
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 1.1e-103 381.3 557 49.7
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 1.5e-103 380.9 547 49.9
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 6.3e-102 375.6 551 50.3
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 1.8e-101 374.0 547 51.4
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 4.1e-101 372.9 525 52.6
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 4.1e-101 372.9 559 50.1
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 5.3e-101 372.5 603 45.3
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 1.6e-100 370.9 531 54.2
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 5.9e-100 369.0 534 53.7
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 5.9e-100 369.0 535 48.6
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 1.7e-99 367.5 627 46.6
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 2.9e-99 366.7 535 48.8
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 2.9e-99 366.7 535 53.1
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 6.5e-99 365.5 534 53.7
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 1.1e-98 364.8 539 50.6
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 2.5e-98 363.6 508 47.0
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.2e-98 363.2 534 53.4
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 5.5e-98 362.5 536 50.2
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 7.2e-98 362.1 537 50.7
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 1.6e-97 360.9 543 46.8
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 4.7e-97 359.4 527 51.4
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 4.7e-97 359.4 535 48.2
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 8.0e-97 358.6 551 46.3
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 1.2e-95 354.8 529 45.4
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 2.0e-95 354.0 566 45.8
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 9.7e-95 351.7 545 49.5
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 9.7e-95 351.7 553 45.4
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 1.1e-93 348.2 549 47.7
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 1.7e-91 340.9 481 49.5
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 1.7e-91 340.9 558 44.3
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 5.0e-91 339.3 562 45.2
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 5.0e-91 339.3 476 49.8
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 8.5e-91 338.6 508 48.0
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 8.5e-91 338.6 557 43.8
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 5.5e-90 335.9 482 49.0
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 8.0e-89 332.0 538 42.8
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 4.0e-88 329.7 534 46.4
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 6.8e-88 328.9 536 45.7
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 2.6e-87 327.0 541 46.6
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 2.8e-86 323.6 541 41.4
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 8.3e-86 322.0 537 46.6
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 1.8e-85 320.9 535 47.1
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 4.1e-85 319.7 532 44.5
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 7.0e-85 318.9 523 46.1
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 1.2e-84 318.2 538 46.1
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 4.5e-84 316.2 542 47.2
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 3.3e-82 310.1 545 46.2
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 3.3e-82 310.1 427 48.7
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 7.2e-82 308.9 549 46.4
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 7.2e-82 308.9 549 46.4
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 1.6e-81 307.8 568 39.8
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 5.9e-76 289.3 668 37.3
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 6.1e-73 279.3 559 38.5
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 8.3e-70 268.9 551 39.9
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 6.0e-68 262.7 372 48.7
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 7.3e-66 255.8 298 53.7
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 3.2e-61 240.4 526 43.3
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 1.2e-60 238.4 413 48.9
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 2.1e-60 237.7 550 40.5
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 1.3e-59 235.0 298 50.0
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 4.7e-57 226.5 531 41.2
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 4.7e-57 226.5 531 41.2
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 8.1e-57 225.7 317 48.6
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 3.1e-56 223.8 588 32.8
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 4.4e-55 219.9 411 48.7
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 1.1e-45 188.7 258 62.4
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 1.3e-43 181.8 580 33.8
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 1.2e-39 168.7 196 51.5
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.8e-38 163.7 292 41.4
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 4.9e-38 163.3 595 31.3
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.5e-34 151.0 251 51.8
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 1.6e-33 148.3 218 43.6
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 8.1e-33 146.0 135 60.7
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.2e-31 142.1 195 54.4
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 1.4e-29 135.2 431 30.9
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 1.6e-28 131.7 115 64.3
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 1.0e-27 129.0 633 27.2
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 5.1e-27 126.7 516 31.8
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 1.2e-23 115.5 454 30.4
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 1.3e-17 95.5 217 38.2
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 4.8e-17 93.6 403 25.8
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 3.1e-16 90.9 87 57.5
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 7.6e-15 86.3 136 45.6
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 3.8e-14 84.0 93 53.8
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.4e-13 82.0 116 44.8
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 2.3e-11 74.7 192 34.4
PRCOL_00001157 Prasinoderma coloniale HOM05D004539 ORTHO05D005482 3.0e-11 74.3 355 25.4
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 3.0e-11 74.3 155 41.3
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 2.2e-09 68.2 479 24.4
BcaB05g23177 Brassica carinata HOM05D004539 ORTHO05D005482 4.5e-07 60.5 102 42.2
SMO367G1003 Selaginella moellendorffii HOM05D004539 ORTHO05D005482 5.9e-07 60.1 186 29.0
AagrBONN_evm.TU.Sc2ySwM_344.1880 Anthoceros agrestis HOM05D004539 ORTHO05D005482 7.7e-07 59.7 163 33.1
MELO3C034665.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.0e-06 59.3 151 37.7


User provided reference genes

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