Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 1.1e-113 413.3 202 100.0
Ca_20421_v3 Cicer arietinum L. HOM05D005658 ORTHO05D006989 1.3e-87 326.6 174 89.7
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 2.3e-84 315.8 171 89.5
Glyma.07G018600 Glycine max HOM05D005658 ORTHO05D006989 2.6e-83 312.4 171 88.3
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 3.1e-81 305.4 171 87.1
Psat5g078360 Pisum sativum HOM05D005658 ORTHO05D006989 5.4e-81 304.7 171 86.5
Glyma.08G203800 Glycine max HOM05D005658 ORTHO05D006989 3.5e-80 302.0 170 85.3
Lj5g0010105 Lotus japonicus HOM05D005658 ORTHO05D006989 4.5e-80 301.6 171 86.0
arahy.Tifrunner.gnm1.ann1.17ZCGM Arachis hypogaea HOM05D005658 ORTHO05D006989 1.7e-79 299.7 168 84.5
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 1.7e-79 299.7 167 84.4
Psat7g255000 Pisum sativum HOM05D005658 ORTHO05D006989 1.7e-79 299.7 171 84.8
Lalb_Chr04g0262841 Lupinus albus HOM05D005658 ORTHO05D006989 7.2e-78 294.3 171 81.3
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 2.8e-77 292.4 166 84.9
Phvul.010G147700 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 4.7e-77 291.6 171 83.6
QL05p021437 Quercus lobata HOM05D005658 ORTHO05D006989 2.0e-75 286.2 170 79.4
CiPaw.01G234800 Carya illinoinensis HOM05D005658 ORTHO05D006989 5.7e-75 284.6 171 78.9
Sabra03G0027300 Salix brachista HOM05D005658 ORTHO05D006989 2.8e-74 282.3 172 79.1
Potri.003G051700 Populus trichocarpa HOM05D005658 ORTHO05D006989 4.9e-74 281.6 170 78.8
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 1.4e-73 280.0 170 78.2
Gohir.D03G066800 Gossypium hirsutum HOM05D005658 ORTHO05D006989 2.4e-73 279.3 176 79.0
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 2.4e-73 279.3 172 76.7
Oeu029646.1 Olea europaea HOM05D005658 ORTHO05D006989 9.2e-73 277.3 168 78.6
TAR383G0711 Trochodendron aralioides HOM05D005658 ORTHO05D006989 9.2e-73 277.3 171 78.4
Manes.04G130900 Manihot esculenta HOM05D005658 ORTHO05D006989 1.2e-72 276.9 171 76.6
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 1.6e-72 276.6 170 80.6
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 2.7e-72 275.8 169 79.9
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 3.5e-72 275.4 170 77.6
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 4.5e-72 275.0 170 77.1
arahy.Tifrunner.gnm1.ann1.JS39C6 Arachis hypogaea HOM05D005658 ORTHO05D006989 1.7e-71 273.1 169 79.3
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 3.9e-71 271.9 170 75.9
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 3.9e-71 271.9 170 79.4
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 5.0e-71 271.6 170 80.0
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 5.0e-71 271.6 170 75.9
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 8.6e-71 270.8 171 74.9
FAN14G0081 Fragaria x ananassa HOM05D005658 ORTHO05D006989 1.1e-70 270.4 170 77.6
Lsat_1_v5_gn_5_131001 Lactuca sativa HOM05D000012 ORTHO05D000804 1.5e-70 270.0 169 74.6
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 1.5e-70 270.0 167 78.4
VMungo0331G0597 Vigna mungo HOM05D005658 ORTHO05D006989 1.5e-70 270.0 170 77.1
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 3.3e-70 268.9 170 75.9
THA.LOC104817977 Tarenaya hassleriana HOM05D005658 ORTHO05D006989 4.3e-70 268.5 170 73.5
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 5.6e-70 268.1 169 75.1
Solyc03g120540.3 Solanum lycopersicum HOM05D005658 ORTHO05D006989 5.6e-70 268.1 169 75.1
Duzib235G1329 Durio zibethinus HOM05D005658 ORTHO05D006989 9.5e-70 267.3 170 75.9
Lj9A509T93 Lonicera japonica HOM05D005658 ORTHO05D006989 1.2e-69 266.9 166 79.5
Rhsim12G0201100 Rhododendron simsii HOM05D005658 ORTHO05D006989 1.6e-69 266.5 168 76.8
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 3.6e-69 265.4 166 77.1
Sopen03g039400 Solanum pennellii HOM05D005658 ORTHO05D006989 3.6e-69 265.4 169 74.6
CAN.G438.34 Capsicum annuum HOM05D005658 ORTHO05D006989 4.7e-69 265.0 169 74.6
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 8.0e-69 264.2 166 77.7
FvH4_6g31890 Fragaria vesca HOM05D005658 ORTHO05D006989 1.0e-68 263.8 170 76.5
Nitab4.5_0004205g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.0e-68 263.8 167 75.4
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 1.0e-68 263.8 171 70.8
FAN02G2498 Fragaria x ananassa HOM05D005658 ORTHO05D006989 1.8e-68 263.1 170 74.7
Phvul.010G147800 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 1.8e-68 263.1 170 74.7
Actinidia08995 Actinidia chinensis HOM05D005658 ORTHO05D006989 2.3e-68 262.7 168 78.0
Cc04_g02920 Coffea canephora HOM05D005658 ORTHO05D006989 2.3e-68 262.7 167 76.0
Nitab4.5_0001315g0030 Nicotiana tabacum HOM05D005658 ORTHO05D006989 2.3e-68 262.7 167 74.9
CSS0031663 Camellia sinensis var. sinensis HOM05D005658 ORTHO05D006989 3.1e-68 262.3 165 77.6
Thhalv10021560m.g Eutrema salsugineum HOM05D005658 ORTHO05D006989 4.0e-68 261.9 171 74.9
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 6.8e-68 261.2 173 74.6
Haze_16346 Corylus avellana HOM05D005658 ORTHO05D006989 8.9e-68 260.8 171 73.1
PGSC0003DMG400002629 Solanum tuberosum HOM05D005658 ORTHO05D006989 1.2e-67 260.4 169 74.0
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 2.0e-67 259.6 170 74.7
MBI04_g04855_MAGBIO Magnolia biondii HOM05D005658 ORTHO05D006989 2.6e-67 259.2 163 76.1
HanXRQChr10g0313501 Helianthus annuus HOM05D005658 ORTHO05D006989 4.4e-67 258.5 165 77.0
AL3G28880 Arabidopsis lyrata HOM05D005658 ORTHO05D006989 5.8e-67 258.1 171 73.1
DCAR_016205 Daucus carota HOM05D005658 ORTHO05D006989 5.8e-67 258.1 167 76.0
Aqoxy7G01547 Aquilegia oxysepala HOM05D005658 ORTHO05D006989 1.3e-66 256.9 168 73.2
CARHR091380 Cardamine hirsuta HOM05D005658 ORTHO05D006989 1.7e-66 256.5 171 73.7
ECA234G0336 Erigeron canadensis HOM05D005658 ORTHO05D006989 2.2e-66 256.1 170 73.5
Sp3g14560 Schrenkiella parvula HOM05D005658 ORTHO05D006989 2.2e-66 256.1 171 73.7
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 2.9e-66 255.8 170 72.9
Cfa002103 Carpinus fangiana HOM05D005658 ORTHO05D006989 2.9e-66 255.8 171 71.9
CDE08G1506 Ceratophyllum demersum HOM05D005658 ORTHO05D006989 3.7e-66 255.4 170 72.4
COL.COLO4_30457 Corchorus olitorius HOM05D005658 ORTHO05D006989 3.7e-66 255.4 167 74.3
AT3G16190 Arabidopsis thaliana HOM05D005658 ORTHO05D006989 8.3e-66 254.2 171 73.1
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 8.3e-66 254.2 170 74.1
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 1.4e-65 253.4 172 69.8
Migut.D01014 Erythranthe guttata HOM05D005658 ORTHO05D006989 5.4e-65 251.5 168 73.8
BcaC09g48588 Brassica carinata HOM05D005658 ORTHO05D006989 7.0e-65 251.1 171 71.9
A05p33310 Brassica napus HOM05D005658 ORTHO05D006989 7.8e-64 247.7 172 71.5
Dinv38010 Davidia involucrata HOM05D005658 ORTHO05D006989 1.3e-63 246.9 146 80.1
AUR62011683 Chenopodium quinoa HOM05D005658 ORTHO05D006989 2.3e-63 246.1 173 68.8
C05p50310 Brassica napus HOM05D005658 ORTHO05D006989 3.9e-63 245.4 172 71.5
PSO210G2136 Papaver somniferum HOM05D005658 ORTHO05D006989 5.0e-63 245.0 171 70.2
ClCG09G001890 Citrullus lanatus HOM05D005658 ORTHO05D006989 8.6e-63 244.2 170 68.2
SEGI_12338 Sequoiadendron giganteum HOM05D005658 ORTHO05D006989 1.9e-62 243.0 167 70.7
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 3.3e-62 242.3 170 69.4
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 4.3e-62 241.9 171 70.8
BraA05t22156Z Brassica rapa HOM05D005658 ORTHO05D006989 5.6e-62 241.5 180 68.9
unitig_746.g26661 Utricularia gibba HOM05D005658 ORTHO05D006989 7.3e-62 241.1 164 71.3
Ah.01g021740 Amaranthus hybridus HOM05D005658 ORTHO05D006989 9.5e-62 240.7 173 67.6
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 1.2e-61 240.4 157 74.5
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 1.6e-61 240.0 170 70.0
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 3.6e-61 238.8 182 67.6
CsaV3_7G033450 Cucumis sativus L. HOM05D005658 ORTHO05D006989 3.6e-61 238.8 170 67.6
PSO210G3060 Papaver somniferum HOM05D005658 ORTHO05D006989 4.7e-61 238.4 169 70.4
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 8.0e-61 237.7 166 68.1
Sed0023183 Sechium edule HOM05D005658 ORTHO05D006989 2.2e-58 229.6 170 63.5
FAN05G4480 Fragaria x ananassa HOM05D005658 ORTHO05D006989 2.9e-58 229.2 147 76.2
Os02g0276400 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 4.9e-58 228.4 169 66.9
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 6.4e-58 228.0 153 75.2
AUR62016508 Chenopodium quinoa HOM05D005658 ORTHO05D006989 8.3e-58 227.6 189 61.4
AUR62016509 Chenopodium quinoa HOM05D005658 ORTHO05D006989 8.3e-58 227.6 173 63.6
Sc12g0009500 Simmondsia chinensis HOM05D005658 ORTHO05D006989 8.3e-58 227.6 154 73.4
Nitab4.5_0001968g0140 Nicotiana tabacum HOM05D005658 ORTHO05D006989 2.4e-57 226.1 168 70.8
Sed0000814 Sechium edule HOM05D005658 ORTHO05D006989 2.4e-57 226.1 167 68.3
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 3.2e-57 225.7 164 66.5
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 1.3e-55 220.3 141 73.8
Carub.0003s1594 Capsella rubella HOM05D005658 ORTHO05D006989 1.7e-55 219.9 147 73.5
MELO3C027085.2 Cucumis melo HOM05D005658 ORTHO05D006989 1.7e-55 219.9 170 64.7
COL.COLO4_18473 Corchorus olitorius HOM05D005658 ORTHO05D006989 3.9e-55 218.8 170 65.9
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 8.6e-55 217.6 164 63.4
Haze_16345 Corylus avellana HOM05D003600 ORTHO05D004129 1.2e-53 213.8 122 83.6
Psat7g255080 Pisum sativum HOM05D005658 ORTHO05D006989 1.2e-53 213.8 117 87.2
Psat5g078240 Pisum sativum HOM05D005658 ORTHO05D006989 2.8e-53 212.6 171 64.3
Cpa.g.sc1241.2 Carica papaya HOM05D005658 ORTHO05D006989 3.6e-53 212.2 133 75.9
TPR.G40810 Trifolium pratense HOM05D005658 ORTHO05D006989 6.2e-53 211.5 117 88.9
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 4.0e-52 208.8 168 60.7
Os02g0276200 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 2.6e-51 206.1 158 65.2
Glyma.08G203700 Glycine max HOM05D005658 ORTHO05D006989 3.7e-50 202.2 118 82.2
SMO147G0229 Selaginella moellendorffii HOM05D005658 ORTHO05D006989 4.1e-49 198.7 165 61.8
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 5.4e-49 198.4 167 60.5
Pp3c13_4590 Physcomitrium patens HOM05D005658 ORTHO05D006989 2.5e-46 189.5 166 58.4
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 4.3e-46 188.7 169 59.2
Sed0018991 Sechium edule HOM05D005658 ORTHO05D006989 5.2e-44 181.8 133 63.9
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 1.6e-40 170.2 166 53.0
AUR62011684 Chenopodium quinoa HOM05D005658 ORTHO05D006989 6.0e-40 168.3 173 52.0
Manes.11G037100 Manihot esculenta HOM05D005658 ORTHO05D006989 1.1e-38 164.1 174 52.9
Nitab4.5_0003039g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.5e-38 163.7 123 68.3
Atru.chr1.3413 Acer truncatum HOM05D005658 ORTHO05D006989 3.6e-37 159.1 95 82.1
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 1.2e-35 154.1 157 51.6
Peaxi162Scf00015g00131 Petunia axillaris HOM05D005658 ORTHO05D006989 5.8e-35 151.8 167 48.5
CAN.G214.3 Capsicum annuum HOM05D005658 ORTHO05D006989 4.0e-28 129.0 120 56.7
TPR.G1351 Trifolium pratense HOM05D005658 ORTHO05D006989 5.3e-20 102.1 58 79.3
QL02p037511 Quercus lobata HOM05D005658 ORTHO05D006989 4.2e-17 92.4 60 71.7
Atru.chr1.3414 Acer truncatum HOM05D005658 ORTHO05D006989 1.9e-14 83.6 51 74.5
Sopen12g022580 Solanum pennellii HOM05D005658 ORTHO05D006989 6.9e-12 75.1 167 35.9
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 3.8e-10 69.3 168 28.6
Lj2g0027544 Lotus japonicus HOM05D006499 ORTHO05D007874 1.2e-08 64.3 163 31.9
Os04g0525800 Oryza sativa ssp. japonica HOM05D006499 ORTHO05D007874 1.2e-08 64.3 161 32.3
Prupe.1G348500 Prunus persica HOM05D006499 ORTHO05D007874 3.5e-08 62.8 165 29.7
Zm00001eb237290 Zea mays HOM05D005658 ORTHO05D006989 3.5e-08 62.8 53 58.5
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 4.6e-08 62.4 166 29.5
ClCG02G014040 Citrullus lanatus HOM05D006499 ORTHO05D007874 4.6e-08 62.4 172 28.5
MELO3C011747.2 Cucumis melo HOM05D000045 ORTHO05D007874 6.1e-08 62.0 172 28.5
CsaV3_5G006120 Cucumis sativus L. HOM05D000045 ORTHO05D007874 7.9e-08 61.6 172 28.5
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 1.0e-07 61.2 166 28.9
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 1.0e-07 61.2 168 28.6
arahy.Tifrunner.gnm1.ann1.2JVF5K Arachis hypogaea HOM05D001175 ORTHO05D021501 1.8e-07 60.5 67 49.3
Cpa.g.sc92.93 Carica papaya HOM05D006499 ORTHO05D007874 1.8e-07 60.5 167 29.9
Sed0001124 Sechium edule HOM05D006499 ORTHO05D007874 1.8e-07 60.5 172 29.1
Ca_05122_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 3.0e-07 59.7 162 30.2
QL03p017519 Quercus lobata HOM05D006499 ORTHO05D007874 3.0e-07 59.7 165 29.1
QL03p017736 Quercus lobata HOM05D006499 ORTHO05D007874 3.0e-07 59.7 165 29.1
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 3.9e-07 59.3 166 28.9
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 5.1e-07 58.9 163 28.2
C02p60950 Brassica napus HOM05D006499 ORTHO05D007874 1.1e-06 57.8 169 27.8
BolC2t12145H Brassica oleracea HOM05D006499 ORTHO05D007874 1.1e-06 57.8 169 27.8
Psat6g099520 Pisum sativum HOM05D006499 ORTHO05D007874 1.1e-06 57.8 162 30.2
Cfa026003 Carpinus fangiana HOM05D006499 ORTHO05D007874 1.5e-06 57.4 150 28.7
Duzib132G0016 Durio zibethinus HOM05D006499 ORTHO05D007874 1.9e-06 57.0 198 27.3
Lalb_Chr04g0258971 Lupinus albus HOM05D006499 ORTHO05D007874 1.9e-06 57.0 162 29.6
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 1.9e-06 57.0 166 28.3
AagrBONN_evm.TU.Sc2ySwM_344.3677 Anthoceros agrestis HOM05D006499 ORTHO05D007874 2.5e-06 56.6 162 28.4
BcaC03g18032 Brassica carinata HOM05D006499 ORTHO05D007874 2.5e-06 56.6 169 27.8
Phvul.003G004400 Phaseolus vulgaris HOM05D006499 ORTHO05D007874 2.5e-06 56.6 162 29.0
arahy.Tifrunner.gnm1.ann1.K04B1Q Arachis hypogaea HOM05D006661 ORTHO05D008369 3.3e-06 56.2 33 72.7
Migut.H01291 Erythranthe guttata HOM05D006499 ORTHO05D007874 4.3e-06 55.8 162 25.9
A02p41090 Brassica napus HOM05D006499 ORTHO05D007874 5.7e-06 55.5 169 27.8
Duzib132G0405 Durio zibethinus HOM05D006499 ORTHO05D007874 5.7e-06 55.5 167 28.7
Aqoxy3G00285 Aquilegia oxysepala HOM05D006499 ORTHO05D007874 7.4e-06 55.1 170 25.9
BraA02t09053Z Brassica rapa HOM05D006499 ORTHO05D007874 9.7e-06 54.7 169 27.2


User provided reference genes

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