Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr3g111330 Medicago truncatula HOM05D005719 ORTHO05D007030 1.5e-286 988.8 501 100.0
Psat5g018640 Pisum sativum HOM05D005719 ORTHO05D007030 9.7e-249 863.2 501 87.4
TPR.G12418 Trifolium pratense HOM05D005719 ORTHO05D007030 1.4e-244 849.4 503 87.7
TPR.G21947 Trifolium pratense HOM05D005719 ORTHO05D007030 3.0e-234 815.1 470 87.2
Glyma.06G092200 Glycine max HOM05D005719 ORTHO05D007030 2.0e-217 759.2 502 78.1
Glyma.04G090400 Glycine max HOM05D005719 ORTHO05D007030 7.8e-214 747.3 501 77.4
Phvul.009G145500 Phaseolus vulgaris HOM05D005719 ORTHO05D007030 3.3e-212 741.9 502 75.5
Lj1g0010479 Lotus japonicus HOM05D005719 ORTHO05D007030 1.2e-203 713.4 502 74.3
Ca_15541_v3 Cicer arietinum L. HOM05D005719 ORTHO05D007030 2.8e-203 712.2 501 77.0
VMungo1309G0989 Vigna mungo HOM05D005719 ORTHO05D007030 6.6e-197 691.0 475 74.5
Lalb_Chr11g0064791 Lupinus albus HOM05D005719 ORTHO05D007030 6.2e-195 684.5 502 71.7
arahy.Tifrunner.gnm1.ann1.SLT0HR Arachis hypogaea HOM05D005719 ORTHO05D007030 2.6e-193 679.1 502 69.5
arahy.Tifrunner.gnm1.ann1.I1WLRD Arachis hypogaea HOM05D005719 ORTHO05D007030 5.8e-193 677.9 502 69.5
TWI56G1147 Tripterygium wilfordii HOM05D005719 ORTHO05D007030 3.4e-169 599.0 503 61.4
Gohir.A05G217800 Gossypium hirsutum HOM05D005719 ORTHO05D007030 1.3e-168 597.0 504 61.3
Gorai.009G226700 Gossypium raimondii HOM05D005719 ORTHO05D007030 2.2e-168 596.3 504 61.5
Haze_22505 Corylus avellana HOM05D005719 ORTHO05D007030 4.6e-166 588.6 531 59.3
Gohir.D05G219700 Gossypium hirsutum HOM05D005719 ORTHO05D007030 3.0e-165 585.9 504 60.9
QL12p040011 Quercus lobata HOM05D005719 ORTHO05D007030 3.0e-165 585.9 510 60.8
Sabra02G0085500 Salix brachista HOM05D005719 ORTHO05D007030 6.7e-165 584.7 503 59.4
CiPaw.08G058000 Carya illinoinensis HOM05D005719 ORTHO05D007030 5.6e-164 581.6 499 60.7
CiPaw.07G161600 Carya illinoinensis HOM05D005719 ORTHO05D007030 1.6e-163 580.1 451 64.1
MD08G1208600 Malus domestica HOM05D005719 ORTHO05D007030 2.1e-163 579.7 506 58.7
MD15G1392600 Malus domestica HOM05D005719 ORTHO05D007030 3.7e-163 578.9 513 58.5
Duzib093G1837 Durio zibethinus HOM05D005719 ORTHO05D007030 1.4e-162 577.0 498 60.6
vmacro04622 Vaccinium macrocarpon HOM05D005719 ORTHO05D007030 2.4e-162 576.2 498 58.8
Manes.18G055200 Manihot esculenta HOM05D005719 ORTHO05D007030 5.8e-161 571.6 507 58.6
Thecc.08G076500 Theobroma cacao HOM05D005719 ORTHO05D007030 1.7e-160 570.1 498 59.4
Cfa013832 Carpinus fangiana HOM05D000446 ORTHO05D000321 3.8e-160 568.9 476 62.2
RcHm_v2.0_Chr7g0233191 Rosa chinensis HOM05D005719 ORTHO05D007030 3.8e-160 568.9 517 57.8
CSS0009932 Camellia sinensis var. sinensis HOM05D005719 ORTHO05D007030 5.5e-159 565.1 507 57.6
Prupe.1G540100 Prunus persica HOM05D005719 ORTHO05D007030 1.2e-158 563.9 513 57.9
Actinidia19605 Actinidia chinensis HOM05D005719 ORTHO05D007030 6.0e-158 561.6 505 57.2
GSVIVG01009231001 Vitis vinifera HOM05D005719 ORTHO05D007030 3.9e-157 558.9 450 62.0
CANSAT21G2028 Cannabis sativa HOM05D005719 ORTHO05D007030 6.2e-155 551.6 505 57.0
Sc02g0008400 Simmondsia chinensis HOM05D005719 ORTHO05D007030 1.1e-154 550.8 500 57.8
Hma1.2p1_0010F.1_g006360 Hydrangea macrophylla HOM05D005719 ORTHO05D007030 6.9e-154 548.1 501 57.3
TAR628G1450 Trochodendron aralioides HOM05D005719 ORTHO05D007030 6.9e-154 548.1 506 57.7
ClCG11G014800 Citrullus lanatus HOM05D005719 ORTHO05D007030 7.6e-153 544.7 504 57.9
CsaV3_3G048210 Cucumis sativus L. HOM05D005719 ORTHO05D007030 1.1e-151 540.8 504 57.3
FvH4_5g33860 Fragaria vesca HOM05D005719 ORTHO05D007030 1.9e-151 540.0 510 56.5
HanXRQChr03g0065451 Helianthus annuus HOM05D005719 ORTHO05D007030 2.5e-151 539.7 498 57.4
Eucgr.F02170 Eucalyptus grandis HOM05D005719 ORTHO05D007030 3.5e-150 535.8 506 56.3
Sed0009724 Sechium edule HOM05D005719 ORTHO05D007030 1.0e-149 534.3 451 60.8
ECA240G4523 Erigeron canadensis HOM05D005719 ORTHO05D007030 8.7e-149 531.2 507 56.2
Cc10_g08220 Coffea canephora HOM05D005719 ORTHO05D007030 9.7e-148 527.7 503 54.5
EL10Ac1g02246 Beta vulgaris HOM05D005719 ORTHO05D007030 4.8e-147 525.4 506 56.1
Ciclev10000979m.g Citrus clementina HOM05D005719 ORTHO05D007030 6.3e-147 525.0 500 55.8
Duzib041G0544 Durio zibethinus HOM05D005719 ORTHO05D007030 6.3e-147 525.0 498 56.4
TAR381G0820 Trochodendron aralioides HOM05D005719 ORTHO05D007030 6.9e-146 521.5 451 58.5
Nitab4.5_0001608g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 9.0e-146 521.2 506 56.1
PGR031G2819 Punica granatum HOM05D005719 ORTHO05D007030 1.2e-145 520.8 500 56.0
Hund05222 Selenicereus undatus HOM05D005719 ORTHO05D007030 2.0e-145 520.0 513 55.0
Lsat_1_v5_gn_7_55820 Lactuca sativa HOM05D005719 ORTHO05D007030 2.9e-144 516.2 516 55.6
COL.COLO4_35322 Corchorus olitorius HOM05D005719 ORTHO05D007030 1.1e-143 514.2 499 56.7
FAN08G1402 Fragaria x ananassa HOM05D005719 ORTHO05D007030 1.2e-142 510.8 579 49.9
Oeu035376.1 Olea europaea HOM05D005719 ORTHO05D007030 2.3e-141 506.5 499 51.5
PSO700G0171 Papaver somniferum HOM05D005719 ORTHO05D007030 6.7e-141 505.0 482 54.6
Cpa.g.sc177.3 Carica papaya HOM05D005719 ORTHO05D007030 1.1e-140 504.2 420 59.8
Thhalv10004086m.g Eutrema salsugineum HOM05D005719 ORTHO05D007030 7.4e-140 501.5 504 53.0
Sopen02g003330 Solanum pennellii HOM05D005719 ORTHO05D007030 1.7e-139 500.4 507 53.3
Solyc02g014380.3 Solanum lycopersicum HOM05D005719 ORTHO05D007030 2.8e-139 499.6 507 53.3
THA.LOC104823811 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 3.7e-139 499.2 504 52.6
Migut.C00296 Erythranthe guttata HOM05D005719 ORTHO05D007030 1.8e-138 496.9 500 51.8
PSO761G0268 Papaver somniferum HOM05D005719 ORTHO05D007030 1.8e-138 496.9 458 55.7
Atru.chr13.942 Acer truncatum HOM05D005719 ORTHO05D007030 3.1e-138 496.1 505 54.1
THA.LOC104805699 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 4.1e-138 495.7 502 52.0
CARHR286650 Cardamine hirsuta HOM05D005719 ORTHO05D007030 9.1e-138 494.6 506 52.0
BcaC06g30902 Brassica carinata HOM05D005719 ORTHO05D007030 3.4e-137 492.7 502 53.0
Sp2g17320 Schrenkiella parvula HOM05D005719 ORTHO05D007030 4.5e-137 492.3 503 52.5
Carub.0005s0719 Capsella rubella HOM05D005719 ORTHO05D007030 4.2e-135 485.7 506 51.4
AL5G18300 Arabidopsis lyrata HOM05D005719 ORTHO05D007030 7.2e-135 485.0 500 52.4
DCAR_014675 Daucus carota HOM05D005719 ORTHO05D007030 2.1e-134 483.4 490 52.0
C07p37630 Brassica napus HOM05D005719 ORTHO05D007030 1.8e-133 480.3 504 51.8
MSTRG.25002 Avicennia marina HOM05D005719 ORTHO05D007030 3.0e-133 479.6 506 51.8
BcaC06g33632 Brassica carinata HOM05D005719 ORTHO05D007030 1.5e-132 477.2 504 51.4
BolC7t44279H Brassica oleracea HOM05D005719 ORTHO05D007030 4.4e-132 475.7 505 51.7
FAN18G0583 Fragaria x ananassa HOM05D005719 ORTHO05D007030 2.2e-131 473.4 463 54.2
CAN.G1751.8 Capsicum annuum HOM05D005719 ORTHO05D007030 2.8e-131 473.0 527 49.7
AT3G28670 Arabidopsis thaliana HOM05D005719 ORTHO05D007030 1.1e-130 471.1 503 50.9
A06p40410 Brassica napus HOM05D005719 ORTHO05D007030 1.3e-128 464.2 512 50.0
BraA06t26959Z Brassica rapa HOM05D005719 ORTHO05D007030 1.3e-128 464.2 512 50.0
MBI16_g44752_MAGBIO Magnolia biondii HOM05D005719 ORTHO05D007030 2.9e-128 463.0 447 53.9
Aa31LG2G4530 Aethionema arabicum HOM05D005719 ORTHO05D007030 3.8e-128 462.6 507 50.3
Manes.05G187400 Manihot esculenta HOM05D005719 ORTHO05D007030 3.8e-128 462.6 398 59.0
Dinv44886 Davidia involucrata HOM05D005719 ORTHO05D007030 9.7e-124 448.0 407 57.5
Nn1g05685 Nelumbo nucifera HOM05D005719 ORTHO05D007030 2.2e-123 446.8 501 49.9
CAN.G1921.11 Capsicum annuum HOM05D005719 ORTHO05D007030 2.8e-123 446.4 504 50.2
AUR62035419 Chenopodium quinoa HOM05D005719 ORTHO05D007030 1.1e-122 444.5 559 47.8
Nitab4.5_0000681g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 4.1e-122 442.6 504 50.4
Rhsim07G0214600 Rhododendron simsii HOM05D005719 ORTHO05D007030 7.0e-122 441.8 372 59.1
unitig_749.g13864 Utricularia gibba HOM05D005719 ORTHO05D000442 3.5e-121 439.5 511 47.4
SGA_v2.0_scaffold14G07072 Striga asiatica HOM05D005719 ORTHO05D007030 5.7e-116 422.2 528 44.9
PGSC0003DMG400019103 Solanum tuberosum HOM05D005719 ORTHO05D007030 2.4e-114 416.8 504 48.4
MELO3C003498.2 Cucumis melo HOM05D005719 ORTHO05D007030 3.8e-112 409.5 373 58.2
Peaxi162Scf01397g00011 Petunia axillaris HOM05D005719 ORTHO05D007030 8.8e-109 398.3 368 57.1
HPP92_028121 Vanilla planifolia HOM05D005719 ORTHO05D007030 2.2e-107 393.7 500 43.2
Ah.00g000110 Amaranthus hybridus HOM05D005719 ORTHO05D007030 4.8e-107 392.5 408 51.5
HPP92_020868 Vanilla planifolia HOM05D005719 ORTHO05D007030 5.4e-106 389.0 500 43.2
Os08g0101400 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 1.4e-101 374.4 494 43.7
CDE07G0720 Ceratophyllum demersum HOM05D005719 ORTHO05D007030 1.7e-91 340.9 498 41.2
PGSC0003DMG400019007 Solanum tuberosum HOM05D005719 ORTHO05D007030 3.2e-90 336.7 507 42.6
Potri.002G108700 Populus trichocarpa HOM05D005719 ORTHO05D007030 4.6e-89 332.8 259 63.7
SalBow7G1913 Salvia bowleyana HOM05D005719 ORTHO05D007030 4.7e-86 322.8 412 44.7
Actinidia29649 Actinidia chinensis HOM05D005719 ORTHO05D007030 1.5e-84 317.8 365 48.8
Pp3c26_6510 Physcomitrium patens HOM05D005719 ORTHO05D007030 1.6e-73 281.2 513 36.5
Mapoly0053s0027 Marchantia polymorpha HOM05D005719 ORTHO05D007030 1.2e-65 255.0 439 35.3
TAR381G0292 Trochodendron aralioides HOM05D005719 ORTHO05D007030 1.5e-63 248.1 235 56.2
AUR62035705 Chenopodium quinoa HOM05D005719 ORTHO05D007030 3.6e-62 243.4 289 45.7
Os10g0188900 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 8.1e-62 242.3 280 46.4
TAR381G1016 Trochodendron aralioides HOM05D005719 ORTHO05D007030 4.0e-53 213.4 198 57.1
HanXRQChr16g0499811 Helianthus annuus HOM05D005719 ORTHO05D007030 6.9e-53 212.6 358 40.2
Lju279A4T8 Lonicera japonica HOM05D005719 ORTHO05D007030 1.3e-51 208.4 182 55.5
Zm00001eb198670 Zea mays HOM05D005719 ORTHO05D007030 1.3e-48 198.4 286 40.2
SMO118G0237 Selaginella moellendorffii HOM05D005719 ORTHO05D007030 3.9e-48 196.8 428 32.0
BcaB04g19478 Brassica carinata HOM05D005719 ORTHO05D007030 1.6e-46 191.4 282 41.1
ATR0144G003 Amborella trichopoda HOM05D005719 ORTHO05D007030 3.5e-41 173.7 227 44.1
AUR62035707 Chenopodium quinoa HOM05D005719 ORTHO05D007030 5.1e-40 169.9 148 61.5
AagrBONN_evm.TU.Sc2ySwM_369.438 Anthoceros agrestis HOM05D005719 ORTHO05D007030 2.1e-38 164.5 276 37.0
Duzib116G0315 Durio zibethinus HOM05D005719 ORTHO05D007030 2.6e-36 157.5 132 58.3
Lju170A15T23 Lonicera japonica HOM05D005719 ORTHO05D007030 2.2e-35 154.5 120 61.7
CBR_g38241 Chara braunii HOM05D005719 ORTHO05D007030 2.7e-33 147.5 407 27.5
Oeu035375.1 Olea europaea HOM05D005719 ORTHO05D007030 2.3e-32 144.4 171 46.2
Hund16029 Selenicereus undatus HOM05D005719 ORTHO05D007030 7.4e-31 139.4 247 37.7
ATR0800G070 Amborella trichopoda HOM05D005719 ORTHO05D007030 3.4e-28 130.6 128 53.9
SEGI_36882 Sequoiadendron giganteum HOM05D005719 ORTHO05D007030 4.2e-26 123.6 147 49.7
Peaxi162Scf01397g00010 Petunia axillaris HOM05D005719 ORTHO05D007030 1.5e-23 115.2 133 49.6
COL.COLO4_23153 Corchorus olitorius HOM05D005719 ORTHO05D007030 8.2e-22 109.4 176 42.0
Lju170A15T24 Lonicera japonica HOM05D005719 ORTHO05D007030 2.4e-21 107.8 109 55.0
SEGI_23985 Sequoiadendron giganteum HOM05D005719 ORTHO05D007030 3.5e-12 77.4 106 38.7
Lju279C4T1 Lonicera japonica HOM05D005719 ORTHO05D007030 2.3e-08 64.7 109 41.3
Cre12.g551000 Chlamydomonas reinhardtii HOM05D005719 ORTHO05D007030 1.5e-07 62.0 250 24.4


User provided reference genes

Program Settings