Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr3g099560 Medicago truncatula HOM05D004775 ORTHO05D005351 2.5e-32 141.4 65 100.0
Medtr3g111440 Medicago truncatula HOM05D004775 ORTHO05D005351 3.1e-14 81.3 39 92.3
FvH4_5g34100 Fragaria vesca HOM05D004775 ORTHO05D005351 1.1e-11 72.8 49 67.3
FAN04G2969 Fragaria x ananassa HOM05D004775 ORTHO05D005351 1.4e-11 72.4 39 79.5
FAN08G1925 Fragaria x ananassa HOM05D004775 ORTHO05D005351 1.4e-11 72.4 39 79.5
FAN18G1173 Fragaria x ananassa HOM05D004775 ORTHO05D005351 1.4e-11 72.4 39 79.5
VMungo0647G0779 Vigna mungo HOM05D004775 ORTHO05D005351 1.9e-11 72.0 62 59.7
Duzib041G0637 Durio zibethinus HOM05D004775 ORTHO05D005351 5.5e-11 70.5 56 58.9
SGA_v2.0_scaffold74G24544 Striga asiatica HOM05D004775 ORTHO05D005351 5.5e-11 70.5 53 64.2
MELO3C003503.2 Cucumis melo HOM05D004775 ORTHO05D005351 7.2e-11 70.1 39 79.5
CsaV3_3G048130 Cucumis sativus L. HOM05D004775 ORTHO05D005351 7.2e-11 70.1 39 79.5
Duzib116G0735 Durio zibethinus HOM05D004775 ORTHO05D005351 7.2e-11 70.1 39 79.5
Sabra02G0086400 Salix brachista HOM05D004775 ORTHO05D005351 7.2e-11 70.1 55 65.5
Sed0025083 Sechium edule HOM05D004775 ORTHO05D005351 7.2e-11 70.1 52 59.6
TWI56G0975 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 7.2e-11 70.1 44 77.3
Atru.chr13.955 Acer truncatum HOM05D004775 ORTHO05D005351 9.3e-11 69.7 39 79.5
Cpa.g.sc177.17 Carica papaya HOM05D004775 ORTHO05D005351 9.3e-11 69.7 51 62.7
ClCG11G014720 Citrullus lanatus HOM05D004775 ORTHO05D005351 9.3e-11 69.7 39 79.5
COL.COLO4_35296 Corchorus olitorius HOM05D004775 ORTHO05D005351 9.3e-11 69.7 39 79.5
Duzib093G0042 Durio zibethinus HOM05D004775 ORTHO05D005351 9.3e-11 69.7 39 79.5
Glyma.02G216500 Glycine max HOM05D004775 ORTHO05D005351 9.3e-11 69.7 39 79.5
MD08G1206200 Malus domestica HOM05D004775 ORTHO05D005351 9.3e-11 69.7 52 65.4
Manes.18G057500 Manihot esculenta HOM05D004775 ORTHO05D005351 9.3e-11 69.7 39 79.5
Thecc.08G074700 Theobroma cacao HOM05D004775 ORTHO05D005351 9.3e-11 69.7 39 79.5
GSVIVG01009218001 Vitis vinifera HOM05D004775 ORTHO05D005351 9.3e-11 69.7 51 62.7
arahy.Tifrunner.gnm1.ann1.ZY5S91 Arachis hypogaea HOM05D004775 ORTHO05D005351 1.2e-10 69.3 39 76.9
CiPaw.07G162400 Carya illinoinensis HOM05D004775 ORTHO05D005351 1.2e-10 69.3 39 79.5
Gohir.A05G216900 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.2e-10 69.3 39 79.5
Gohir.D05G220600 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.2e-10 69.3 39 79.5
Gorai.009G227600 Gossypium raimondii HOM05D004775 ORTHO05D005351 1.2e-10 69.3 39 79.5
Prupe.1G538600 Prunus persica HOM05D004775 ORTHO05D005351 1.2e-10 69.3 39 76.9
MSTRG.24993 Avicennia marina HOM05D004775 ORTHO05D005351 1.6e-10 68.9 39 76.9
Haze_22493 Corylus avellana HOM05D004775 ORTHO05D005351 1.6e-10 68.9 39 76.9
Potri.002G109800 Populus trichocarpa HOM05D004775 ORTHO05D005351 1.6e-10 68.9 39 74.4
GSVIVG01009216001 Vitis vinifera HOM05D004775 ORTHO05D005351 1.6e-10 68.9 51 62.7
Actinidia10268 Actinidia chinensis HOM05D004775 ORTHO05D005351 2.1e-10 68.6 39 76.9
MSTRG.932 Avicennia marina HOM05D004775 ORTHO05D005351 2.1e-10 68.6 39 74.4
Cc10_g08310 Coffea canephora HOM05D004775 ORTHO05D005351 2.1e-10 68.6 39 76.9
Glyma.14G183500 Glycine max HOM05D004775 ORTHO05D005351 2.1e-10 68.6 39 76.9
LjContig00408g0019215 Lotus japonicus HOM05D004775 ORTHO05D005351 2.1e-10 68.6 39 76.9
Lalb_Chr11g0064841 Lupinus albus HOM05D004775 ORTHO05D005351 2.1e-10 68.6 44 75.0
MD15G1389500 Malus domestica HOM05D004775 ORTHO05D005351 2.1e-10 68.6 52 63.5
Sed0023619 Sechium edule HOM05D004775 ORTHO05D005351 2.1e-10 68.6 39 76.9
THA.LOC104816787 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 2.1e-10 68.6 52 59.6
vmacro21362 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 2.1e-10 68.6 51 60.8
Migut.C00072 Erythranthe guttata HOM05D004775 ORTHO05D005351 2.7e-10 68.2 39 74.4
Hma1.2p1_0010F.1_g006440 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 2.7e-10 68.2 39 74.4
RcHm_v2.0_Chr7g0233601 Rosa chinensis HOM05D004775 ORTHO05D005351 2.7e-10 68.2 39 74.4
Hund17253 Selenicereus undatus HOM05D004775 ORTHO05D005351 2.7e-10 68.2 39 76.9
Ciclev10002525m.g Citrus clementina HOM05D004775 ORTHO05D005351 3.5e-10 67.8 39 74.4
Phvul.008G183600 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 3.5e-10 67.8 39 76.9
Psat0s3268g0200 Pisum sativum HOM05D004775 ORTHO05D005351 3.5e-10 67.8 39 76.9
TPR.G12363 Trifolium pratense HOM05D004775 ORTHO05D005351 3.5e-10 67.8 39 79.5
unitig_578.g16108 Utricularia gibba HOM05D004775 ORTHO05D005351 3.5e-10 67.8 39 74.4
unitig_8.g4905 Utricularia gibba HOM05D004775 ORTHO05D005351 3.5e-10 67.8 39 74.4
CANSAT25G1480 Cannabis sativa HOM05D004775 ORTHO05D005351 4.6e-10 67.4 39 74.4
Dinv44879 Davidia involucrata HOM05D000583 ORTHO05D000442 4.6e-10 67.4 39 74.4
Gohir.A01G125800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 4.6e-10 67.4 39 76.9
Gohir.D01G113700 Gossypium hirsutum HOM05D004775 ORTHO05D005351 4.6e-10 67.4 39 76.9
Gorai.002G138100 Gossypium raimondii HOM05D004775 ORTHO05D005351 4.6e-10 67.4 39 76.9
Lalb_Chr17g0344651 Lupinus albus HOM05D004775 ORTHO05D005351 4.6e-10 67.4 39 74.4
PGR042G0432 Punica granatum HOM05D004775 ORTHO05D005351 4.6e-10 67.4 52 59.6
CDE02G4408 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 6.1e-10 67.0 39 69.2
Phvul.009G145000 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 6.1e-10 67.0 39 74.4
Psat2g064440 Pisum sativum HOM05D004775 ORTHO05D005351 6.1e-10 67.0 39 71.8
QL12p039787 Quercus lobata HOM05D004775 ORTHO05D005351 6.1e-10 67.0 39 74.4
Peaxi162Scf00962g00039 Petunia axillaris HOM05D004775 ORTHO05D005351 7.9e-10 66.6 39 74.4
Aqoxy6G00652 Aquilegia oxysepala HOM05D004775 ORTHO05D005351 1.0e-09 66.2 39 74.4
Sc26g0003070 Simmondsia chinensis HOM05D004775 ORTHO05D005351 1.0e-09 66.2 39 69.2
TWI12G1154 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 1.0e-09 66.2 44 72.7
TWI36G1537 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 1.0e-09 66.2 44 75.0
Ca_15537_v3 Cicer arietinum L. HOM05D000583 ORTHO05D000442 1.3e-09 65.9 39 76.9
Glyma.06G092700 Glycine max HOM05D004775 ORTHO05D005351 1.3e-09 65.9 39 71.8
HanXRQChr02g0046001 Helianthus annuus HOM05D004775 ORTHO05D005351 1.3e-09 65.9 44 65.9
TPR.G27047 Trifolium pratense HOM05D004775 ORTHO05D005351 1.3e-09 65.9 39 69.2
CAN.G723.7 Capsicum annuum HOM05D004775 ORTHO05D005351 1.8e-09 65.5 39 71.8
CDE01G0193 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 1.8e-09 65.5 39 69.2
Dinv42587 Davidia involucrata HOM05D004775 ORTHO05D005351 1.8e-09 65.5 39 71.8
Medtr5g066840 Medicago truncatula HOM05D004775 ORTHO05D005351 1.8e-09 65.5 39 71.8
Nitab4.5_0003184g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 1.8e-09 65.5 39 71.8
THA.LOC104823690 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 1.8e-09 65.5 52 57.7
Eucgr.F00443 Eucalyptus grandis HOM05D004775 ORTHO05D005351 2.3e-09 65.1 37 75.7
Nn5g29801 Nelumbo nucifera HOM05D004775 ORTHO05D005351 2.3e-09 65.1 39 69.2
Nitab4.5_0018050g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 2.3e-09 65.1 39 71.8
Solyc04g076670.3 Solanum lycopersicum HOM05D004775 ORTHO05D005351 2.3e-09 65.1 39 71.8
Sopen04g030390 Solanum pennellii HOM05D004775 ORTHO05D005351 2.3e-09 65.1 39 71.8
VMungo1309G0719 Vigna mungo HOM05D004775 ORTHO05D005351 2.3e-09 65.1 39 74.4
Hma1.2p1_0125F.1_g058660 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 3.0e-09 64.7 39 69.2
Nn1g05655 Nelumbo nucifera HOM05D004775 ORTHO05D005351 3.0e-09 64.7 39 69.2
Solyc12g088070.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 3.0e-09 64.7 39 69.2
Sopen12g030090 Solanum pennellii HOM05D004775 ORTHO05D005351 3.0e-09 64.7 39 69.2
PGSC0003DMG402002053 Solanum tuberosum HOM05D004775 ORTHO05D005351 3.0e-09 64.7 39 69.2
Actinidia19256 Actinidia chinensis HOM05D004775 ORTHO05D005351 5.1e-09 63.9 39 71.8
CSS0014871 Camellia sinensis var. sinensis HOM05D004775 ORTHO05D005351 5.1e-09 63.9 39 71.8
Gohir.A06G030500 Gossypium hirsutum HOM05D004775 ORTHO05D005351 5.1e-09 63.9 38 76.3
Gohir.D06G029800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 5.1e-09 63.9 38 76.3
Oeu038164.1 Olea europaea HOM05D004775 ORTHO05D005351 5.1e-09 63.9 39 69.2
PSO532G0015 Papaver somniferum HOM05D004775 ORTHO05D005351 5.1e-09 63.9 39 66.7
PSO541G4289 Papaver somniferum HOM05D004775 ORTHO05D005351 5.1e-09 63.9 39 66.7
PSO541G5225 Papaver somniferum HOM05D004775 ORTHO05D005351 5.1e-09 63.9 39 66.7
Nitab4.5_0000885g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 6.7e-09 63.5 39 69.2
BcaB03g13545 Brassica carinata HOM05D004775 ORTHO05D005351 8.7e-09 63.2 39 64.1
DCAR_020031 Daucus carota HOM05D004775 ORTHO05D005351 8.7e-09 63.2 38 65.8
A06p06630 Brassica napus HOM05D004775 ORTHO05D005351 1.1e-08 62.8 52 55.8
BraA06t23877Z Brassica rapa HOM05D004775 ORTHO05D005351 1.1e-08 62.8 52 55.8
Gorai.010G032800 Gossypium raimondii HOM05D004775 ORTHO05D005351 1.1e-08 62.8 38 73.7
unitig_37.g13069 Utricularia gibba HOM05D000316 ORTHO05D005351 1.1e-08 62.8 39 71.8
Thhalv10008829m.g Eutrema salsugineum HOM05D004775 ORTHO05D005351 1.9e-08 62.0 39 66.7
CAN.G1104.13 Capsicum annuum HOM05D004775 ORTHO05D005351 2.5e-08 61.6 39 66.7
Nitab4.5_0000354g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 2.5e-08 61.6 39 64.1
Aa31LG1G4980 Aethionema arabicum HOM05D000583 ORTHO05D000442 3.3e-08 61.2 44 63.6
Lsat_1_v5_gn_6_107340 Lactuca sativa HOM05D004775 ORTHO05D005351 3.3e-08 61.2 44 63.6
AL1G20520 Arabidopsis lyrata HOM05D004775 ORTHO05D005351 4.3e-08 60.8 39 66.7
AT1G09920 Arabidopsis thaliana HOM05D004775 ORTHO05D005351 4.3e-08 60.8 39 66.7
Carub.0001s0930 Capsella rubella HOM05D004775 ORTHO05D005351 4.3e-08 60.8 39 66.7
Ca_05476_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 4.3e-08 60.8 39 64.1
Ca_30556_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 4.3e-08 60.8 39 64.1
ECA247G3351 Erigeron canadensis HOM05D004775 ORTHO05D005351 4.3e-08 60.8 39 66.7
MBI16_g12296_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 4.3e-08 60.8 39 64.1
ATR0800G163 Amborella trichopoda HOM05D004775 ORTHO05D005351 5.7e-08 60.5 39 61.5
CARHR009970 Cardamine hirsuta HOM05D004775 ORTHO05D005351 5.7e-08 60.5 39 64.1
ECA246G4228 Erigeron canadensis HOM05D004775 ORTHO05D005351 5.7e-08 60.5 44 63.6
Sp1g08560 Schrenkiella parvula HOM05D004775 ORTHO05D005351 5.7e-08 60.5 39 64.1
C05p08040 Brassica napus HOM05D004775 ORTHO05D005351 7.4e-08 60.1 39 64.1
BolC5t29556H Brassica oleracea HOM05D004775 ORTHO05D005351 7.4e-08 60.1 39 64.1
HanXRQChr05g0163501 Helianthus annuus HOM05D004775 ORTHO05D005351 7.4e-08 60.1 39 66.7
HanXRQChr10g0277731 Helianthus annuus HOM05D004775 ORTHO05D005351 9.7e-08 59.7 39 64.1
Solyc12g088060.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 9.7e-08 59.7 39 61.5
CAN.G1104.12 Capsicum annuum HOM05D004775 ORTHO05D005351 1.3e-07 59.3 44 61.4
MBI05_g43456_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 1.6e-07 58.9 62 45.2
Lsat_1_v5_gn_1_840 Lactuca sativa HOM05D004775 ORTHO05D005351 2.2e-07 58.5 39 64.1
BcaC05g24832 Brassica carinata HOM05D004775 ORTHO05D005351 2.8e-07 58.2 39 61.5
BcaC07g38533 Brassica carinata HOM05D004775 ORTHO05D005351 3.7e-07 57.8 29 79.3
A08p34290 Brassica napus HOM05D004775 ORTHO05D005351 3.7e-07 57.8 29 79.3
C08p13270 Brassica napus HOM05D004775 ORTHO05D005351 3.7e-07 57.8 29 79.3
BolC8t48959H Brassica oleracea HOM05D004775 ORTHO05D005351 3.7e-07 57.8 29 79.3
BraA08t35340Z Brassica rapa HOM05D004775 ORTHO05D005351 3.7e-07 57.8 29 79.3
TAR381G0646 Trochodendron aralioides HOM05D004775 ORTHO05D005351 3.7e-07 57.8 39 61.5
TAR625G1011 Trochodendron aralioides HOM05D004775 ORTHO05D005351 3.7e-07 57.8 39 64.1
MBI10_g33158_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 6.3e-07 57.0 50 54.0
Zm00001eb017320 Zea mays HOM05D004775 ORTHO05D005351 1.1e-06 56.2 46 56.5
Zm00001eb394470 Zea mays HOM05D004775 ORTHO05D005351 4.1e-06 54.3 30 70.0


User provided reference genes

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