Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr3g099130 Medicago truncatula HOM05D005391 ORTHO05D006694 9.3e-93 343.6 180 100.0
Ca_16053_v3 Cicer arietinum L. HOM05D005391 ORTHO05D006694 1.7e-78 296.2 184 86.4
Psat5g051960 Pisum sativum HOM05D005391 ORTHO05D006694 3.7e-73 278.5 182 82.4
TPR.G14215 Trifolium pratense HOM05D005391 ORTHO05D006694 2.4e-72 275.8 185 82.2
Lj1g0005006 Lotus japonicus HOM05D005391 ORTHO05D006694 4.2e-61 238.4 182 73.6
Glyma.04G196600 Glycine max HOM05D005391 ORTHO05D006694 5.0e-54 214.9 180 68.9
Glyma.06G169200 Glycine max HOM05D005391 ORTHO05D006694 1.2e-52 210.3 180 66.7
Lalb_Chr23g0273681 Lupinus albus HOM05D005391 ORTHO05D006694 1.2e-52 210.3 185 66.5
Phvul.009G165600 Phaseolus vulgaris HOM05D005391 ORTHO05D006694 2.3e-51 206.1 182 67.0
Thecc.03G130500 Theobroma cacao HOM05D005391 ORTHO05D006694 1.1e-50 203.8 198 62.6
COL.COLO4_28143 Corchorus olitorius HOM05D005391 ORTHO05D006694 3.3e-50 202.2 199 61.3
arahy.Tifrunner.gnm1.ann1.S11VKX Arachis hypogaea HOM05D005391 ORTHO05D006694 2.0e-47 193.0 202 57.4
Gohir.A07G050600 Gossypium hirsutum HOM05D005391 ORTHO05D006694 1.0e-46 190.7 182 61.5
Gohir.D07G055100 Gossypium hirsutum HOM05D005391 ORTHO05D006694 1.0e-46 190.7 180 62.2
Gorai.001G058300 Gossypium raimondii HOM05D005391 ORTHO05D006694 1.0e-46 190.7 180 62.2
CiPaw.12G044000 Carya illinoinensis HOM05D005391 ORTHO05D006694 6.5e-46 188.0 199 55.8
vmacro16727 Vaccinium macrocarpon HOM05D005391 ORTHO05D006694 1.9e-45 186.4 186 61.8
arahy.Tifrunner.gnm1.ann1.3A01UJ Arachis hypogaea HOM05D005391 ORTHO05D006694 3.2e-45 185.7 210 55.2
Cpa.g.sc13.100 Carica papaya HOM05D005391 ORTHO05D006694 4.2e-45 185.3 196 59.2
Manes.14G050400 Manihot esculenta HOM05D005391 ORTHO05D006694 5.5e-45 184.9 208 56.7
MD08G1006700 Malus domestica HOM05D005391 ORTHO05D006694 9.4e-45 184.1 195 59.5
MD15G1005900 Malus domestica HOM05D005391 ORTHO05D006694 9.4e-45 184.1 193 60.1
CiPaw.11G006200 Carya illinoinensis HOM05D005391 ORTHO05D006694 2.1e-44 183.0 195 56.4
Dinv23158 Davidia involucrata HOM05D005391 ORTHO05D006694 2.7e-44 182.6 176 61.4
Actinidia36818 Actinidia chinensis HOM05D005391 ORTHO05D006694 1.4e-43 180.3 180 58.3
Potri.015G097800 Populus trichocarpa HOM05D005391 ORTHO05D006694 1.4e-43 180.3 183 58.5
Ca_01190_v3 Cicer arietinum L. HOM05D005391 ORTHO05D006694 1.8e-43 179.9 130 75.4
FvH4_2g37750 Fragaria vesca HOM05D005391 ORTHO05D006694 3.0e-43 179.1 187 57.8
Sed0002904 Sechium edule HOM05D005391 ORTHO05D006694 3.0e-43 179.1 194 53.1
TWI23G0649 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 3.0e-43 179.1 186 57.0
Potri.012G099200 Populus trichocarpa HOM05D005391 ORTHO05D006694 5.2e-43 178.3 174 59.8
MELO3C026202.2 Cucumis melo HOM05D005391 ORTHO05D006694 1.5e-42 176.8 199 54.3
Prupe.1G358600 Prunus persica HOM05D005391 ORTHO05D006694 1.5e-42 176.8 193 57.5
FAN20G0870 Fragaria x ananassa HOM05D005391 ORTHO05D006694 2.0e-42 176.4 184 56.5
CsaV3_1G000500 Cucumis sativus L. HOM05D005391 ORTHO05D006694 3.3e-42 175.6 199 53.8
FAN27G0224 Fragaria x ananassa HOM05D005391 ORTHO05D006694 3.3e-42 175.6 187 56.7
Nn3g16438 Nelumbo nucifera HOM05D005391 ORTHO05D006694 3.3e-42 175.6 184 56.5
FAN15G0439 Fragaria x ananassa HOM05D005391 ORTHO05D006694 5.7e-42 174.9 184 56.0
Rhsim12G0176000 Rhododendron simsii HOM05D005391 ORTHO05D006694 7.5e-42 174.5 181 60.8
Lsat_1_v5_gn_4_81240 Lactuca sativa HOM05D005391 ORTHO05D006694 1.3e-41 173.7 186 59.1
Sabra12G0072400 Salix brachista HOM05D005391 ORTHO05D006694 1.3e-41 173.7 181 58.0
TAR629G0488 Trochodendron aralioides HOM05D005391 ORTHO05D006694 2.2e-41 172.9 166 57.8
arahy.Tifrunner.gnm1.ann1.CP8X4X Arachis hypogaea HOM05D005391 ORTHO05D006694 2.8e-41 172.6 244 47.5
arahy.Tifrunner.gnm1.ann1.HT4698 Arachis hypogaea HOM05D005391 ORTHO05D006694 2.8e-41 172.6 244 47.5
CSS0043065 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 3.7e-41 172.2 190 57.4
CANSAT80G1472 Cannabis sativa HOM05D005391 ORTHO05D006694 3.7e-41 172.2 196 55.6
Duzib205G0229 Durio zibethinus HOM05D005391 ORTHO05D006694 3.7e-41 172.2 203 56.2
MBI07_g28244_MAGBIO Magnolia biondii HOM05D005391 ORTHO05D006694 8.2e-41 171.0 170 61.2
CSS0003205 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 1.1e-40 170.6 192 56.2
CSS0033680 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 1.1e-40 170.6 192 56.2
TWI14G1436 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 1.1e-40 170.6 186 53.8
THA.LOC104798944 Tarenaya hassleriana HOM05D005391 ORTHO05D006694 3.1e-40 169.1 187 55.6
Ciclev10032864m.g Citrus clementina HOM05D005391 ORTHO05D006694 7.0e-40 167.9 187 57.8
ECA232G1626 Erigeron canadensis HOM05D005391 ORTHO05D006694 7.0e-40 167.9 183 55.2
Atru.chr6.1808 Acer truncatum HOM05D005391 ORTHO05D006694 1.6e-39 166.8 188 55.9
Peaxi162Scf00045g01932 Petunia axillaris HOM05D005391 ORTHO05D006694 2.0e-39 166.4 185 54.1
RcHm_v2.0_Chr6g0303761 Rosa chinensis HOM05D005391 ORTHO05D006694 4.5e-39 165.2 195 53.8
Nn4g22289 Nelumbo nucifera HOM05D005391 ORTHO05D006694 7.7e-39 164.5 174 57.5
Ah.03g143420 Amaranthus hybridus HOM05D005391 ORTHO05D006694 2.2e-38 162.9 173 58.4
Nitab4.5_0000264g0120 Nicotiana tabacum HOM05D005391 ORTHO05D006694 3.8e-38 162.2 187 52.4
FAN26G2573 Fragaria x ananassa HOM05D005391 ORTHO05D006694 5.0e-38 161.8 179 53.1
Oeu009657.1 Olea europaea HOM05D005391 ORTHO05D006694 5.0e-38 161.8 201 52.2
Sabra15G0118500 Salix brachista HOM05D005391 ORTHO05D006694 8.5e-38 161.0 195 52.8
Sp2g26560 Schrenkiella parvula HOM05D005391 ORTHO05D006694 8.5e-38 161.0 176 58.0
TAR371G0831 Trochodendron aralioides HOM05D005391 ORTHO05D006694 8.5e-38 161.0 170 55.9
DCAR_016386 Daucus carota HOM05D005391 ORTHO05D006694 1.1e-37 160.6 182 53.3
Hund08624 Selenicereus undatus HOM05D005391 ORTHO05D006694 1.5e-37 160.2 178 55.6
PGSC0003DMG400026284 Solanum tuberosum HOM05D005391 ORTHO05D006694 1.9e-37 159.8 191 51.3
PSO478G3696 Papaver somniferum HOM05D005391 ORTHO05D006694 3.2e-37 159.1 173 55.5
CARHR277330 Cardamine hirsuta HOM05D005391 ORTHO05D006694 4.2e-37 158.7 178 53.9
PSO017G3900 Papaver somniferum HOM05D005391 ORTHO05D006694 5.5e-37 158.3 173 54.9
A06p30110 Brassica napus HOM05D005391 ORTHO05D006694 4.7e-36 155.2 178 54.5
A09p08280 Brassica napus HOM05D005391 ORTHO05D006694 4.7e-36 155.2 168 54.8
BraA06t25962Z Brassica rapa HOM05D005391 ORTHO05D006694 4.7e-36 155.2 178 54.5
ClCG06G017970 Citrullus lanatus HOM05D005391 ORTHO05D006694 6.1e-36 154.8 248 42.3
BolC3t18550H Brassica oleracea HOM05D005391 ORTHO05D006694 1.0e-35 154.1 178 53.4
Aa31LG1G18560 Aethionema arabicum HOM05D005391 ORTHO05D006694 1.4e-35 153.7 198 50.5
AL8G40540 Arabidopsis lyrata HOM05D005391 ORTHO05D006694 1.4e-35 153.7 178 53.4
BcaB04g19920 Brassica carinata HOM05D005391 ORTHO05D006694 1.4e-35 153.7 177 53.1
C03p62960 Brassica napus HOM05D005391 ORTHO05D006694 1.4e-35 153.7 178 53.4
AUR62003784 Chenopodium quinoa HOM05D005391 ORTHO05D006694 1.8e-35 153.3 182 52.2
AUR62002017 Chenopodium quinoa HOM05D005391 ORTHO05D006694 2.3e-35 152.9 184 53.8
Haze_07152 Corylus avellana HOM05D005391 ORTHO05D006694 2.3e-35 152.9 196 50.5
Lj5A95T81 Lonicera japonica HOM05D005391 ORTHO05D006694 3.0e-35 152.5 201 52.7
GSVIVG01008565001 Vitis vinifera HOM05D005391 ORTHO05D006694 4.0e-35 152.1 175 56.6
MSTRG.25825 Avicennia marina HOM05D005391 ORTHO05D006694 1.2e-34 150.6 213 46.9
Cfa018784 Carpinus fangiana HOM05D005391 ORTHO05D006694 1.2e-34 150.6 196 50.0
Cc08_g07550 Coffea canephora HOM05D005391 ORTHO05D006694 1.2e-34 150.6 195 49.7
unitig_32.g10935 Utricularia gibba HOM05D005391 ORTHO05D006694 1.5e-34 150.2 203 49.3
BraA09t36478Z Brassica rapa HOM05D005391 ORTHO05D006694 2.6e-34 149.4 169 53.3
Sopen08g002620 Solanum pennellii HOM05D005391 ORTHO05D006694 4.4e-34 148.7 197 48.7
Solyc08g006670.3 Solanum lycopersicum HOM05D005391 ORTHO05D006694 2.2e-33 146.4 197 48.2
SGA_v2.0_scaffold169G38603 Striga asiatica HOM05D005391 ORTHO05D006694 2.2e-33 146.4 182 52.7
EL10Ac6g15093 Beta vulgaris HOM05D005391 ORTHO05D006694 2.8e-33 146.0 170 51.8
Thhalv10004987m.g Eutrema salsugineum HOM05D005391 ORTHO05D006694 2.8e-33 146.0 185 49.2
BcaB02g09758 Brassica carinata HOM05D005391 ORTHO05D006694 1.1e-32 144.1 175 52.0
Migut.E01449 Erythranthe guttata HOM05D005391 ORTHO05D006694 1.1e-32 144.1 196 48.0
QL10p002677 Quercus lobata HOM05D005391 ORTHO05D006694 1.4e-32 143.7 185 49.7
Carub.0008s2418 Capsella rubella HOM05D005391 ORTHO05D006694 2.0e-31 139.8 177 51.4
ATR0171G017 Amborella trichopoda HOM05D005391 ORTHO05D006694 1.3e-30 137.1 176 46.6
AT5G63480 Arabidopsis thaliana HOM05D005391 ORTHO05D006694 1.7e-30 136.7 178 51.7
Aqoxy3G01572 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 3.8e-30 135.6 175 51.4
CDE04G2377 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 8.6e-30 134.4 175 49.1
BolC9t53848H Brassica oleracea HOM05D005391 ORTHO05D006694 1.1e-29 134.0 166 51.2
CDE10G0912 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 1.1e-29 134.0 170 48.8
SalBow8G3527 Salvia bowleyana HOM05D005391 ORTHO05D006694 1.9e-29 133.3 202 46.0
Zm00001eb421130 Zea mays HOM05D005391 ORTHO05D006694 2.5e-29 132.9 173 49.1
Actinidia08882 Actinidia chinensis HOM05D005391 ORTHO05D006694 7.2e-29 131.3 150 56.7
HanXRQChr09g0273301 Helianthus annuus HOM05D005391 ORTHO05D006694 9.5e-29 131.0 141 56.7
BcaC04g23332 Brassica carinata HOM05D005391 ORTHO05D006694 1.4e-27 127.1 166 50.0
C09p09360 Brassica napus HOM05D005391 ORTHO05D006694 1.4e-27 127.1 166 50.0
VMungo1309G0665 Vigna mungo HOM05D005391 ORTHO05D006694 5.2e-27 125.2 123 61.0
Aqoxy3G00618 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 2.6e-26 122.9 180 46.7
Nitab4.5_0001362g0010 Nicotiana tabacum HOM05D005391 ORTHO05D006694 3.7e-25 119.0 200 45.5
Ah.07g204620 Amaranthus hybridus HOM05D005391 ORTHO05D006694 6.3e-25 118.2 141 55.3
HPP92_023119 Vanilla planifolia HOM05D005391 ORTHO05D006694 9.2e-24 114.4 177 45.8
Oeu040668.1 Olea europaea HOM05D005391 ORTHO05D006694 1.6e-23 113.6 150 50.7
FAN23G2258 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.0e-22 110.9 148 48.6
CSS0010891 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 8.6e-22 107.8 124 57.3
SEGI_01116 Sequoiadendron giganteum HOM05D005391 ORTHO05D006694 8.6e-22 107.8 179 40.2
FAN23G0903 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.8e-19 100.1 180 42.2
Mapoly0007s0225 Marchantia polymorpha HOM05D005391 ORTHO05D006694 5.2e-19 98.6 164 38.4
Sc04g0000550 Simmondsia chinensis HOM05D005391 ORTHO05D006694 5.2e-19 98.6 130 49.2
DCAR_021623 Daucus carota HOM05D005391 ORTHO05D006694 1.2e-18 97.4 166 38.0
Pp3c7_3280 Physcomitrium patens HOM05D005391 ORTHO05D006694 4.9e-17 92.0 175 38.3
SMO364G0653 Selaginella moellendorffii HOM05D005391 ORTHO05D006694 8.3e-17 91.3 160 37.5
Gohir.1Z049409 Gossypium hirsutum HOM05D005391 ORTHO05D006694 5.4e-16 88.6 116 50.0
AagrBONN_evm.TU.Sc2ySwM_369.268 Anthoceros agrestis HOM05D005391 ORTHO05D006694 3.5e-15 85.9 175 34.9
Os04g0388601 Oryza sativa ssp. japonica HOM05D005391 ORTHO05D006694 1.6e-12 77.0 164 36.0
CSS0049043 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 3.4e-10 69.3 67 56.7
SEGI_13536 Sequoiadendron giganteum HOM05D005391 ORTHO05D006694 3.2e-08 62.8 119 37.0
Zm00001eb085410 Zea mays HOM05D005391 ORTHO05D006694 5.4e-08 62.0 120 37.5
Hund13632 Selenicereus undatus HOM05D005391 ORTHO05D006694 3.0e-06 56.2 152 31.6


User provided reference genes

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