Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr3g067715 Medicago truncatula HOM05D006437 ORTHO05D007973 2.8e-38 161.4 77 100.0
TPR.G15845 Trifolium pratense HOM05D006437 ORTHO05D007973 9.0e-37 156.4 77 94.8
CANSAT78G0649 Cannabis sativa HOM05D006437 ORTHO05D007973 4.2e-34 147.5 75 90.7
Medtr3g067720 Medicago truncatula HOM05D006437 ORTHO05D007973 4.2e-34 147.5 77 89.6
PSO017G0604 Papaver somniferum HOM05D006437 ORTHO05D007973 2.7e-33 144.8 76 84.2
PSO478G4394 Papaver somniferum HOM05D006437 ORTHO05D007973 2.7e-33 144.8 76 84.2
Phvul.001G231901 Phaseolus vulgaris HOM05D006437 ORTHO05D007973 2.7e-33 144.8 77 85.7
ECA238G0319 Erigeron canadensis HOM05D006437 ORTHO05D007973 1.0e-32 142.9 77 87.0
Lj6g0018768 Lotus japonicus HOM05D006437 ORTHO05D007973 1.3e-32 142.5 77 83.1
Glyma.11G218400 Glycine max HOM05D006437 ORTHO05D007973 3.0e-32 141.4 77 83.1
MD09G1261500 Malus domestica HOM05D006437 ORTHO05D007973 3.0e-32 141.4 73 87.7
Glyma.18G038851 Glycine max HOM05D006437 ORTHO05D007973 3.9e-32 141.0 77 83.1
Aqoxy5G01129 Aquilegia oxysepala HOM05D006437 ORTHO05D007973 8.7e-32 139.8 75 80.0
Lsat_1_v5_gn_2_81461 Lactuca sativa HOM05D006437 ORTHO05D007973 1.1e-31 139.4 77 81.8
HanXRQChr07g0193741 Helianthus annuus HOM05D006437 ORTHO05D007973 1.9e-31 138.7 73 83.6
Aqoxy7G00638 Aquilegia oxysepala HOM05D006437 ORTHO05D007973 2.5e-31 138.3 75 84.0
Ciclev10013249m.g Citrus clementina HOM05D006437 ORTHO05D007973 2.5e-31 138.3 75 81.3
Nn4g24140 Nelumbo nucifera HOM05D006437 ORTHO05D007973 2.5e-31 138.3 76 82.9
TAR629G2663 Trochodendron aralioides HOM05D006437 ORTHO05D007973 3.3e-31 137.9 76 82.9
Nn3g18216 Nelumbo nucifera HOM05D006437 ORTHO05D007973 4.3e-31 137.5 75 84.0
Solyc02g091390.3 Solanum lycopersicum HOM05D006437 ORTHO05D007973 5.6e-31 137.1 74 82.4
Sopen02g036010 Solanum pennellii HOM05D006437 ORTHO05D007973 5.6e-31 137.1 74 82.4
PGSC0003DMG400030646 Solanum tuberosum HOM05D006437 ORTHO05D007973 5.6e-31 137.1 74 82.4
MELO3C020290.2 Cucumis melo HOM05D006437 ORTHO05D007973 7.4e-31 136.7 76 81.6
Lalb_Chr10g0104491 Lupinus albus HOM05D006437 ORTHO05D007973 9.6e-31 136.3 77 80.5
Zm00001eb158640 Zea mays HOM05D006437 ORTHO05D007973 9.6e-31 136.3 72 83.3
Eucgr.F02822 Eucalyptus grandis HOM05D006437 ORTHO05D007973 1.3e-30 136.0 76 81.6
Sed0002962 Sechium edule HOM05D006437 ORTHO05D007973 1.3e-30 136.0 76 78.9
Thecc.04G121100 Theobroma cacao HOM05D006437 ORTHO05D007973 1.3e-30 136.0 77 80.5
Nitab4.5_0004399g0060 Nicotiana tabacum HOM05D006437 ORTHO05D007973 1.6e-30 135.6 76 77.6
AL3G12980 Arabidopsis lyrata HOM05D006437 ORTHO05D007973 2.1e-30 135.2 72 86.1
AT3G03341 Arabidopsis thaliana HOM05D006437 ORTHO05D007973 2.1e-30 135.2 72 86.1
BcaC05g30279 Brassica carinata HOM05D006437 ORTHO05D007973 2.1e-30 135.2 72 87.5
Carub.0003s0252 Capsella rubella HOM05D006437 ORTHO05D007973 2.1e-30 135.2 72 86.1
CARHR077390 Cardamine hirsuta HOM05D006437 ORTHO05D007973 2.1e-30 135.2 72 86.1
TAR371G0259 Trochodendron aralioides HOM05D006437 ORTHO05D007973 2.1e-30 135.2 74 81.1
AUR62023238 Chenopodium quinoa HOM05D006437 ORTHO05D007973 2.8e-30 134.8 74 81.1
ClCG05G010950 Citrullus lanatus HOM05D006437 ORTHO05D007973 2.8e-30 134.8 76 77.6
DCAR_015248 Daucus carota HOM05D006437 ORTHO05D007973 2.8e-30 134.8 70 88.6
Thhalv10022211m.g Eutrema salsugineum HOM05D006437 ORTHO05D007973 2.8e-30 134.8 72 86.1
Hma1.2p1_0832F.1_g225650 Hydrangea macrophylla HOM05D006437 ORTHO05D007973 2.8e-30 134.8 73 80.8
Sp3g02370 Schrenkiella parvula HOM05D006437 ORTHO05D007973 2.8e-30 134.8 72 86.1
BcaC04g18789 Brassica carinata HOM05D006437 ORTHO05D007973 3.7e-30 134.4 71 84.5
BcaC09g47742 Brassica carinata HOM05D006437 ORTHO05D007973 3.7e-30 134.4 72 86.1
A06p26360 Brassica napus HOM05D006437 ORTHO05D007973 3.7e-30 134.4 72 86.1
BNapus_Darmor_BZH_scaffold_162p00120 Brassica napus HOM05D006437 ORTHO05D007973 3.7e-30 134.4 72 86.1
BNapus_Darmor_BZH_scaffold_78p00110 Brassica napus HOM05D006437 ORTHO05D007973 3.7e-30 134.4 72 86.1
BolC1t05835H Brassica oleracea HOM05D006437 ORTHO05D007973 3.7e-30 134.4 72 86.1
Cpa.g.sc604.3 Carica papaya HOM05D006437 ORTHO05D007973 3.7e-30 134.4 74 82.4
SalBow7G1639 Salvia bowleyana HOM05D006437 ORTHO05D007973 3.7e-30 134.4 76 80.3
CiPaw.03G068600 Carya illinoinensis HOM05D006437 ORTHO05D007973 4.8e-30 134.0 75 80.0
Migut.L00468 Erythranthe guttata HOM05D006437 ORTHO05D007973 4.8e-30 134.0 76 80.3
Cfa007843 Carpinus fangiana HOM05D006437 ORTHO05D007973 1.1e-29 132.9 77 77.9
AUR62023191 Chenopodium quinoa HOM05D006437 ORTHO05D007973 1.1e-29 132.9 74 79.7
Ca_08164_v3 Cicer arietinum L. HOM05D006437 ORTHO05D007973 1.1e-29 132.9 72 84.7
PGR042G3666 Punica granatum HOM05D006437 ORTHO05D007973 1.1e-29 132.9 76 80.3
TAR371G1269 Trochodendron aralioides HOM05D006437 ORTHO05D007973 1.1e-29 132.9 74 79.7
BcaC09g47741 Brassica carinata HOM05D006437 ORTHO05D007973 1.4e-29 132.5 72 86.1
Aa31LG5G13890 Aethionema arabicum HOM05D006437 ORTHO05D007973 1.8e-29 132.1 72 81.9
EL10Ac2g04484 Beta vulgaris HOM05D006437 ORTHO05D007973 1.8e-29 132.1 74 79.7
AUR62023192 Chenopodium quinoa HOM05D006437 ORTHO05D007973 2.4e-29 131.7 73 76.7
Os01g0644200 Oryza sativa ssp. japonica HOM05D006437 ORTHO05D007973 2.4e-29 131.7 72 79.2
Manes.02G074600 Manihot esculenta HOM05D006437 ORTHO05D007973 4.0e-29 131.0 73 75.3
BraA01t04584Z Brassica rapa HOM05D006437 ORTHO05D007973 5.3e-29 130.6 72 84.7
AUR62023239 Chenopodium quinoa HOM05D006437 ORTHO05D007973 5.3e-29 130.6 73 75.3
Lalb_Chr10g0104501 Lupinus albus HOM05D006437 ORTHO05D007973 6.9e-29 130.2 78 76.9
GSVIVG01030860001 Vitis vinifera HOM05D006437 ORTHO05D007973 6.9e-29 130.2 75 77.3
CARHR195740 Cardamine hirsuta HOM05D006437 ORTHO05D007973 9.0e-29 129.8 71 80.3
Cc07_g08170 Coffea canephora HOM05D006437 ORTHO05D007973 9.0e-29 129.8 76 76.3
Dinv19010 Davidia involucrata HOM05D006437 ORTHO05D007973 9.0e-29 129.8 68 83.8
Carub.0006s1569 Capsella rubella HOM05D006437 ORTHO05D007973 2.0e-28 128.6 71 80.3
AL6G28540 Arabidopsis lyrata HOM05D006437 ORTHO05D007973 2.6e-28 128.3 71 78.9
Haze_14223 Corylus avellana HOM05D006437 ORTHO05D007973 2.6e-28 128.3 76 73.7
QL11p004106 Quercus lobata HOM05D006437 ORTHO05D007973 2.6e-28 128.3 74 77.0
CSS0019264 Camellia sinensis var. sinensis HOM05D006437 ORTHO05D007973 3.4e-28 127.9 74 77.0
Thhalv10015148m.g Eutrema salsugineum HOM05D006437 ORTHO05D007973 3.4e-28 127.9 71 80.3
Potri.017G128600 Populus trichocarpa HOM05D006437 ORTHO05D007973 3.4e-28 127.9 75 77.3
RcHm_v2.0_Chr1g0370661 Rosa chinensis HOM05D006437 ORTHO05D007973 3.4e-28 127.9 75 77.3
CSS0043713 Camellia sinensis var. sinensis HOM05D006437 ORTHO05D007973 4.5e-28 127.5 69 82.6
FvH4_5g32381 Fragaria vesca HOM05D006437 ORTHO05D007973 4.5e-28 127.5 66 89.4
A10p21920 Brassica napus HOM05D006437 ORTHO05D007973 7.6e-28 126.7 67 83.6
AL288U10020 Arabidopsis lyrata HOM05D006437 ORTHO05D007973 1.0e-27 126.3 72 83.3
FAN27G3274 Fragaria x ananassa HOM05D006437 ORTHO05D007973 1.0e-27 126.3 69 84.1
C09p59670 Brassica napus HOM05D006437 ORTHO05D007973 1.3e-27 125.9 66 84.8
BolC9t58806H Brassica oleracea HOM05D006437 ORTHO05D007973 1.3e-27 125.9 66 84.8
BraA10t44251Z Brassica rapa HOM05D006437 ORTHO05D007973 1.3e-27 125.9 66 84.8
THA.LOC104820840 Tarenaya hassleriana HOM05D006437 ORTHO05D007973 3.8e-27 124.4 72 77.8
FAN15G1984 Fragaria x ananassa HOM05D006437 ORTHO05D007973 8.4e-27 123.2 69 81.2
CsaV3_1G027840 Cucumis sativus L. HOM05D006437 ORTHO05D007973 9.3e-26 119.8 69 73.9
CsaV3_3G021640 Cucumis sativus L. HOM05D006437 ORTHO05D007973 9.3e-26 119.8 69 73.9
PSO017G3771 Papaver somniferum HOM05D006437 ORTHO05D007973 9.3e-26 119.8 69 76.8
PSO478G0303 Papaver somniferum HOM05D006437 ORTHO05D007973 9.3e-26 119.8 69 76.8
FAN20G1691 Fragaria x ananassa HOM05D006874 ORTHO05D008334 2.1e-25 118.6 62 83.9
SMO111G0099 Selaginella moellendorffii HOM05D006437 ORTHO05D007973 2.7e-25 118.2 72 75.0
Mapoly0046s0059 Marchantia polymorpha HOM05D006437 ORTHO05D007973 4.6e-25 117.5 72 66.7
Pp3c24_9690 Physcomitrium patens HOM05D006437 ORTHO05D007973 4.6e-25 117.5 72 69.4
MELO3C020291.2 Cucumis melo HOM05D006437 ORTHO05D007973 1.0e-24 116.3 76 71.1
Prupe.3G158900 Prunus persica HOM05D006437 ORTHO05D007973 1.8e-24 115.5 67 76.1
Mapoly0046s0058 Marchantia polymorpha HOM05D006437 ORTHO05D007973 2.3e-24 115.2 72 70.8
BcaB08g36768 Brassica carinata HOM05D002536 ORTHO05D007973 5.1e-24 114.0 60 81.7
Pp3c8_12730 Physcomitrium patens HOM05D006437 ORTHO05D007973 8.7e-24 113.2 72 66.7
Pp3c8_12731 Physcomitrium patens HOM05D006437 ORTHO05D007973 8.7e-24 113.2 72 66.7
SMO111G0160 Selaginella moellendorffii HOM05D006437 ORTHO05D007973 4.3e-23 110.9 72 68.1
SMO111G0173 Selaginella moellendorffii HOM05D006437 ORTHO05D007973 4.3e-23 110.9 72 68.1
SMO293G0011 Selaginella moellendorffii HOM05D006437 ORTHO05D007973 4.3e-23 110.9 72 68.1
Pp3c23_9530 Physcomitrium patens HOM05D006437 ORTHO05D007973 5.7e-23 110.5 74 63.5
Pp3c4_12160 Physcomitrium patens HOM05D006437 ORTHO05D007973 9.6e-23 109.8 77 58.4
Peaxi162Scf00118g00018 Petunia axillaris HOM05D006437 ORTHO05D007973 2.1e-22 108.6 71 73.2
Aqoxy7G00636 Aquilegia oxysepala HOM05D006437 ORTHO05D007973 2.8e-22 108.2 62 75.8
Pp3c19_5460 Physcomitrium patens HOM05D006437 ORTHO05D007973 2.8e-22 108.2 74 62.2
Pp3c19_5500 Physcomitrium patens HOM05D006437 ORTHO05D007973 2.8e-22 108.2 74 62.2
Pp3c19_9840 Physcomitrium patens HOM05D006437 ORTHO05D007973 3.7e-22 107.8 74 62.2
SMO111G0149 Selaginella moellendorffii HOM05D006437 ORTHO05D007973 3.7e-22 107.8 72 65.3
Pp3c21_13210 Physcomitrium patens HOM05D006437 ORTHO05D007973 6.3e-22 107.1 74 60.8
Mapoly0009s0147 Marchantia polymorpha HOM05D006437 ORTHO05D007973 1.7e-19 99.0 74 55.4
Rhsim08G0086000 Rhododendron simsii HOM05D006437 ORTHO05D007973 8.5e-19 96.7 74 63.5
SEGI_27045 Sequoiadendron giganteum HOM05D006437 ORTHO05D007973 1.1e-18 96.3 69 58.0
SEGI_20637 Sequoiadendron giganteum HOM05D006437 ORTHO05D007973 4.2e-18 94.4 69 56.5
TAR371G0835 Trochodendron aralioides HOM05D006437 ORTHO05D007973 7.2e-18 93.6 49 83.7
TAR371G0317 Trochodendron aralioides HOM05D006437 ORTHO05D007973 2.3e-16 88.6 48 81.2
SEGI_23307 Sequoiadendron giganteum HOM05D006437 ORTHO05D007973 3.9e-16 87.8 58 69.0
Cre03.g207100 Chlamydomonas reinhardtii HOM05D006437 ORTHO05D007973 2.3e-08 62.0 77 39.0
Cre13.g575701 Chlamydomonas reinhardtii HOM05D006437 ORTHO05D007973 2.3e-08 62.0 70 41.4
TAR371G0913 Trochodendron aralioides HOM05D006437 ORTHO05D007973 8.8e-08 60.1 29 86.2
Cre03.g207152 Chlamydomonas reinhardtii HOM05D006437 ORTHO05D007973 1.5e-07 59.3 70 41.4
TAR371G0323 Trochodendron aralioides HOM05D006437 ORTHO05D007973 2.6e-07 58.5 28 85.7


User provided reference genes

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