Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr3g067495 Medicago truncatula HOM05D005714 ORTHO05D006812 5.7e-49 197.2 95 100.0
Medtr6g016870 Medicago truncatula HOM05D005714 ORTHO05D006812 1.8e-34 149.1 95 82.1
TPR.G9671 Trifolium pratense HOM05D005714 ORTHO05D006812 1.7e-32 142.5 94 78.7
Psat1g062640 Pisum sativum HOM05D005714 ORTHO05D006812 2.0e-30 135.6 95 78.9
Dinv33913 Davidia involucrata HOM05D005714 ORTHO05D006812 1.4e-23 112.8 93 64.5
Lj2g0024465 Lotus japonicus HOM05D005714 ORTHO05D006812 1.8e-23 112.5 92 63.0
SalBow1G2935 Salvia bowleyana HOM05D005714 ORTHO05D006812 2.4e-23 112.1 95 63.2
SalBow1G3421 Salvia bowleyana HOM05D005714 ORTHO05D006812 2.4e-23 112.1 95 63.2
PGR042G2576 Punica granatum HOM05D005714 ORTHO05D006812 1.2e-22 109.8 94 60.6
Lj7A8G44 Lonicera japonica HOM05D005714 ORTHO05D006812 1.6e-22 109.4 93 62.4
Ca_20731_v3 Cicer arietinum L. HOM05D005714 ORTHO05D006812 2.0e-22 109.0 91 65.9
COL.COLO4_03920 Corchorus olitorius HOM05D005714 ORTHO05D006812 2.7e-22 108.6 94 61.7
Actinidia36301 Actinidia chinensis HOM05D005714 ORTHO05D006812 3.5e-22 108.2 93 62.4
Cfa007977 Carpinus fangiana HOM05D001801 ORTHO05D001739 4.5e-22 107.8 94 61.7
Nitab4.5_0003161g0010 Nicotiana tabacum HOM05D005714 ORTHO05D006812 4.5e-22 107.8 94 59.6
MSTRG.2945 Avicennia marina HOM05D005714 ORTHO05D006812 5.9e-22 107.5 95 60.0
Cc07_g04960 Coffea canephora HOM05D005714 ORTHO05D006812 5.9e-22 107.5 94 60.6
Migut.H00540 Erythranthe guttata HOM05D005714 ORTHO05D006812 5.9e-22 107.5 95 62.1
Eucgr.J01456 Eucalyptus grandis HOM05D005714 ORTHO05D006812 5.9e-22 107.5 92 58.7
Lalb_Chr21g0317991 Lupinus albus HOM05D005714 ORTHO05D006812 5.9e-22 107.5 94 60.6
Manes.02G065100 Manihot esculenta HOM05D005714 ORTHO05D006812 5.9e-22 107.5 92 59.8
Rhsim10G0064900 Rhododendron simsii HOM05D005714 ORTHO05D006812 5.9e-22 107.5 94 61.7
CiPaw.03G006400 Carya illinoinensis HOM05D005714 ORTHO05D006812 7.7e-22 107.1 94 62.8
Duzib138G1804 Durio zibethinus HOM05D005714 ORTHO05D006812 7.7e-22 107.1 94 60.6
Oeu032870.1 Olea europaea HOM05D005714 ORTHO05D006812 7.7e-22 107.1 95 62.1
Gohir.A11G168300 Gossypium hirsutum HOM05D005714 ORTHO05D006812 1.3e-21 106.3 94 60.6
Gorai.007G187100 Gossypium raimondii HOM05D005714 ORTHO05D006812 1.3e-21 106.3 94 60.6
Peaxi162Scf00479g00037 Petunia axillaris HOM05D005714 ORTHO05D006812 1.3e-21 106.3 92 57.6
Sed0016830 Sechium edule HOM05D005714 ORTHO05D006812 1.3e-21 106.3 93 63.4
CAN.G551.30 Capsicum annuum HOM05D005714 ORTHO05D006812 1.7e-21 105.9 93 60.2
GSVIVG01036468001 Vitis vinifera HOM05D005714 ORTHO05D006812 1.7e-21 105.9 93 59.1
Gohir.D11G174600 Gossypium hirsutum HOM05D005714 ORTHO05D006812 2.2e-21 105.5 94 60.6
Potri.017G110300 Populus trichocarpa HOM05D005714 ORTHO05D006812 2.2e-21 105.5 92 59.8
Sopen03g009720 Solanum pennellii HOM05D005714 ORTHO05D006812 3.8e-21 104.8 96 61.5
SGA_v2.0_scaffold204G41660 Striga asiatica HOM05D005714 ORTHO05D006812 3.8e-21 104.8 95 58.9
Aqoxy3G03832 Aquilegia oxysepala HOM05D005714 ORTHO05D006812 5.0e-21 104.4 93 59.1
PGSC0003DMG400018763 Solanum tuberosum HOM05D005714 ORTHO05D006812 5.0e-21 104.4 96 60.4
CSS0016024 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 6.5e-21 104.0 93 59.1
CSS0020756 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 6.5e-21 104.0 93 59.1
FvH4_6g45610 Fragaria vesca HOM05D005714 ORTHO05D006812 6.5e-21 104.0 94 59.6
Nitab4.5_0000612g0140 Nicotiana tabacum HOM05D005714 ORTHO05D006812 6.5e-21 104.0 93 58.1
Prupe.3G242300 Prunus persica HOM05D005714 ORTHO05D006812 6.5e-21 104.0 94 59.6
RcHm_v2.0_Chr2g0163701 Rosa chinensis HOM05D005714 ORTHO05D006812 6.5e-21 104.0 94 59.6
RcHm_v2.0_Chr2g0163761 Rosa chinensis HOM05D005714 ORTHO05D006812 6.5e-21 104.0 94 59.6
C09p61160 Brassica napus HOM05D005714 ORTHO05D006812 1.1e-20 103.2 92 57.6
MELO3C023776.2 Cucumis melo HOM05D005714 ORTHO05D006812 1.1e-20 103.2 94 57.4
Phvul.004G049100 Phaseolus vulgaris HOM05D005714 ORTHO05D006812 1.1e-20 103.2 92 62.0
QL02p053457 Quercus lobata HOM05D005714 ORTHO05D006812 1.1e-20 103.2 94 58.5
Sabra17G0092200 Salix brachista HOM05D005714 ORTHO05D006812 1.1e-20 103.2 92 58.7
Thecc.04G144400 Theobroma cacao HOM05D005714 ORTHO05D006812 1.1e-20 103.2 94 58.5
FAN05G0119 Fragaria x ananassa HOM05D005714 ORTHO05D006812 1.5e-20 102.8 94 58.5
MD17G1072600 Malus domestica HOM05D005714 ORTHO05D006812 1.5e-20 102.8 92 59.8
Atru.BG.225.p Acer truncatum HOM05D005714 ORTHO05D006812 1.9e-20 102.4 92 59.8
BcaB08g36870 Brassica carinata HOM05D005714 ORTHO05D006812 2.5e-20 102.1 92 57.6
MD09G1081200 Malus domestica HOM05D005714 ORTHO05D006812 2.5e-20 102.1 92 59.8
Sabra04G0076700 Salix brachista HOM05D005714 ORTHO05D006812 2.5e-20 102.1 92 58.7
FAN09G3422 Fragaria x ananassa HOM05D005714 ORTHO05D006812 3.2e-20 101.7 94 58.5
HanXRQChr15g0490211 Helianthus annuus HOM05D005714 ORTHO05D006812 3.2e-20 101.7 94 58.5
Ah.10g037360 Amaranthus hybridus HOM05D005714 ORTHO05D006812 5.5e-20 100.9 94 57.4
THA.LOC104802994 Tarenaya hassleriana HOM05D005714 ORTHO05D006812 5.5e-20 100.9 92 58.7
CANSAT64G2721 Cannabis sativa HOM05D005714 ORTHO05D006812 7.2e-20 100.5 95 57.9
Thhalv10015850m.g Eutrema salsugineum HOM05D005714 ORTHO05D006812 7.2e-20 100.5 92 57.6
EL10Ac2g04627 Beta vulgaris HOM05D005714 ORTHO05D006812 9.4e-20 100.1 94 56.4
CARHR197420 Cardamine hirsuta HOM05D005714 ORTHO05D006812 9.4e-20 100.1 92 57.6
Sp6g28230 Schrenkiella parvula HOM05D005714 ORTHO05D006812 9.4e-20 100.1 92 56.5
Sc10g0001430 Simmondsia chinensis HOM05D005714 ORTHO05D006812 9.4e-20 100.1 92 59.8
AT5G15880 Arabidopsis thaliana HOM05D005714 ORTHO05D006812 1.2e-19 99.8 92 57.6
Carub.0006s1407 Capsella rubella HOM05D005714 ORTHO05D006812 1.2e-19 99.8 92 57.6
Aa31LG11G13710 Aethionema arabicum HOM05D005714 ORTHO05D006812 2.1e-19 99.0 92 57.6
TWI74G1644 Tripterygium wilfordii HOM05D005714 ORTHO05D006812 2.1e-19 99.0 92 56.5
unitig_899.g15126 Utricularia gibba HOM05D005714 ORTHO05D006812 2.1e-19 99.0 95 55.8
BolC9t58957H Brassica oleracea HOM05D005714 ORTHO05D006812 2.7e-19 98.6 91 56.0
Solyc03g046260.2 Solanum lycopersicum HOM05D005714 ORTHO05D006812 2.7e-19 98.6 96 58.3
BraA10t44382Z Brassica rapa HOM05D005714 ORTHO05D006812 3.6e-19 98.2 92 55.4
Lsat_1_v5_gn_4_175801 Lactuca sativa HOM05D005714 ORTHO05D006812 3.6e-19 98.2 94 56.4
TAR622G1272 Trochodendron aralioides HOM05D005714 ORTHO05D006812 8.0e-19 97.1 94 57.4
AL6G26770 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 1.4e-18 96.3 92 56.5
AL6G26782 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 1.4e-18 96.3 92 56.5
Nn3g17645 Nelumbo nucifera HOM05D005714 ORTHO05D006812 1.4e-18 96.3 94 56.4
ClCG05G011990 Citrullus lanatus HOM05D005714 ORTHO05D006812 1.8e-18 95.9 94 57.4
Hund16108 Selenicereus undatus HOM05D005714 ORTHO05D006812 2.3e-18 95.5 94 56.4
Potri.004G105400 Populus trichocarpa HOM05D005714 ORTHO05D006812 3.0e-18 95.1 92 55.4
CDE02G2817 Ceratophyllum demersum HOM05D005714 ORTHO05D006812 5.2e-18 94.4 92 53.3
CsaV3_3G020470 Cucumis sativus L. HOM05D005714 ORTHO05D006812 5.2e-18 94.4 95 54.7
arahy.Tifrunner.gnm1.ann1.AEQW57 Arachis hypogaea HOM05D005714 ORTHO05D006812 6.8e-18 94.0 92 55.4
arahy.Tifrunner.gnm1.ann1.R8VTVZ Arachis hypogaea HOM05D005714 ORTHO05D006812 6.8e-18 94.0 92 55.4
C03p08510 Brassica napus HOM05D005714 ORTHO05D006812 8.8e-18 93.6 92 53.3
BolC3t13356H Brassica oleracea HOM05D005714 ORTHO05D006812 8.8e-18 93.6 92 53.3
ECA232G3066 Erigeron canadensis HOM05D005714 ORTHO05D006812 8.8e-18 93.6 94 54.3
PSO063G3590 Papaver somniferum HOM05D005714 ORTHO05D006812 1.2e-17 93.2 96 52.1
Ciclev10012317m.g Citrus clementina HOM05D005714 ORTHO05D006812 1.5e-17 92.8 95 54.7
MBI15_g36941_MAGBIO Magnolia biondii HOM05D005714 ORTHO05D006812 1.5e-17 92.8 95 51.6
A03p07460 Brassica napus HOM05D005714 ORTHO05D006812 3.4e-17 91.7 94 53.2
C03p08640 Brassica napus HOM05D005714 ORTHO05D006812 3.4e-17 91.7 93 53.8
BolC3t13366H Brassica oleracea HOM05D005714 ORTHO05D006812 3.4e-17 91.7 93 53.8
BraA03t10072Z Brassica rapa HOM05D005714 ORTHO05D006812 3.4e-17 91.7 94 53.2
BraA03t10075Z Brassica rapa HOM05D005714 ORTHO05D006812 3.4e-17 91.7 94 53.2
Cpa.g.sc179.47 Carica papaya HOM05D005714 ORTHO05D006812 4.4e-17 91.3 92 55.4
ATR0752G125 Amborella trichopoda HOM05D005714 ORTHO05D006812 1.3e-16 89.7 92 54.3
HPP92_027404 Vanilla planifolia HOM05D005714 ORTHO05D006812 8.3e-16 87.0 95 51.6
vmacro05584 Vaccinium macrocarpon HOM05D005714 ORTHO05D006812 4.1e-15 84.7 87 56.3
PSO782G2399 Papaver somniferum HOM05D005714 ORTHO05D006812 2.7e-14 82.0 96 50.0
CSS0044543 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 4.5e-14 81.3 94 53.2
CSS0047938 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 4.5e-14 81.3 94 53.2
Os09g0108400 Oryza sativa ssp. japonica HOM05D005714 ORTHO05D006812 1.0e-13 80.1 96 49.0
SEGI_16525 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 2.3e-13 79.0 93 45.2
BcaB01g05015 Brassica carinata HOM05D005714 ORTHO05D006812 8.6e-13 77.0 79 53.2
SMO139G0044 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 2.5e-12 75.5 92 46.7
Pp3c1_6350 Physcomitrium patens HOM05D005714 ORTHO05D006812 3.2e-12 75.1 92 47.8
SMO145G0024 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 5.5e-12 74.3 92 46.7
Zm00001eb208920 Zea mays HOM05D005714 ORTHO05D006812 1.2e-11 73.2 96 44.8
Cfa007975 Carpinus fangiana HOM05D005714 ORTHO05D006812 1.8e-10 69.3 59 55.9
MD17G1072400 Malus domestica HOM05D005714 ORTHO05D006812 2.3e-10 68.9 92 47.8
Mapoly0066s0019 Marchantia polymorpha HOM05D005714 ORTHO05D006812 5.7e-09 64.3 95 38.9


User provided reference genes

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