Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr3g064240 Medicago truncatula HOM05D005881 ORTHO05D007298 5.5e-40 167.2 83 100.0
TPR.G37331 Trifolium pratense HOM05D005881 ORTHO05D007298 3.0e-38 161.4 81 96.3
Glyma.18G045400 Glycine max HOM05D005881 ORTHO05D007298 8.2e-36 153.3 83 88.0
Glyma.11G208400 Glycine max HOM05D005881 ORTHO05D007298 2.4e-35 151.8 83 86.7
Lj6g0001713 Lotus japonicus HOM05D005881 ORTHO05D007298 6.9e-35 150.2 83 86.7
arahy.Tifrunner.gnm1.ann1.8HB0N1 Arachis hypogaea HOM05D005881 ORTHO05D007298 9.1e-35 149.8 83 85.5
Lalb_Chr18g0053871 Lupinus albus HOM05D005881 ORTHO05D007298 2.6e-34 148.3 83 84.3
arahy.Tifrunner.gnm1.ann1.6Q1IVA Arachis hypogaea HOM05D005881 ORTHO05D007298 1.0e-33 146.4 83 84.3
arahy.Tifrunner.gnm1.ann1.GZL8T6 Arachis hypogaea HOM05D005881 ORTHO05D007298 1.0e-33 146.4 83 84.3
THA.LOC104812459 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 3.8e-33 144.4 81 81.5
ClCG10G007340 Citrullus lanatus HOM05D005881 ORTHO05D007298 5.0e-33 144.1 82 80.5
Gohir.A01G000500 Gossypium hirsutum HOM05D005881 ORTHO05D007298 6.5e-33 143.7 81 84.0
Gohir.1Z049413 Gossypium hirsutum HOM05D005881 ORTHO05D007298 8.5e-33 143.3 81 82.7
Gohir.1Z049621 Gossypium hirsutum HOM05D005881 ORTHO05D007298 8.5e-33 143.3 81 82.7
Duzib052G1237 Durio zibethinus HOM05D005881 ORTHO05D007298 1.1e-32 142.9 81 81.5
Gohir.D10G000200 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.1e-32 142.9 81 81.5
Gorai.002G000700 Gossypium raimondii HOM05D005881 ORTHO05D007298 1.1e-32 142.9 81 82.7
arahy.Tifrunner.gnm1.ann1.VTJ29R Arachis hypogaea HOM05D005881 ORTHO05D007298 1.9e-32 142.1 88 79.5
Haze_07862 Corylus avellana HOM05D005881 ORTHO05D007298 2.5e-32 141.7 81 80.2
MD09G1270200 Malus domestica HOM05D005881 ORTHO05D007298 3.2e-32 141.4 77 85.7
Thecc.02G037800 Theobroma cacao HOM05D005881 ORTHO05D007298 4.2e-32 141.0 81 81.5
Sed0016149 Sechium edule HOM05D005881 ORTHO05D007298 5.5e-32 140.6 77 84.4
MD17G1268300 Malus domestica HOM05D005881 ORTHO05D007298 7.2e-32 140.2 82 79.3
QL02p102397 Quercus lobata HOM05D005881 ORTHO05D007298 7.2e-32 140.2 81 80.2
Cfa026039 Carpinus fangiana HOM05D005881 ORTHO05D007298 9.4e-32 139.8 81 79.0
QL02p103034 Quercus lobata HOM05D005881 ORTHO05D007298 9.4e-32 139.8 81 80.2
Potri.004G227500 Populus trichocarpa HOM05D005881 ORTHO05D007298 1.2e-31 139.4 82 79.3
Ciclev10002996m.g Citrus clementina HOM05D005881 ORTHO05D007298 2.7e-31 138.3 82 78.0
Haze_12831 Corylus avellana HOM05D005881 ORTHO05D007298 2.7e-31 138.3 81 79.0
PSO407G0212 Papaver somniferum HOM05D005881 ORTHO05D007298 2.7e-31 138.3 77 83.1
vmacro19838 Vaccinium macrocarpon HOM05D005881 ORTHO05D007298 2.7e-31 138.3 76 81.6
Aqoxy1G00234 Aquilegia oxysepala HOM05D005881 ORTHO05D007298 3.6e-31 137.9 75 85.3
PSO017G1314 Papaver somniferum HOM05D005881 ORTHO05D007298 3.6e-31 137.9 77 83.1
Prupe.1G582900 Prunus persica HOM05D005881 ORTHO05D007298 3.6e-31 137.9 82 78.0
TWI79G0203 Tripterygium wilfordii HOM05D005881 ORTHO05D007298 3.6e-31 137.9 82 75.6
PSO170G3105 Papaver somniferum HOM05D005881 ORTHO05D007298 4.7e-31 137.5 77 83.1
THA.LOC104812941 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 4.7e-31 137.5 79 78.5
Manes.10G110680 Manihot esculenta HOM05D005881 ORTHO05D007298 7.9e-31 136.7 77 81.8
CiPaw.06G026000 Carya illinoinensis HOM05D005881 ORTHO05D007298 1.0e-30 136.3 77 80.5
DCAR_001713 Daucus carota HOM05D005881 ORTHO05D007298 1.4e-30 136.0 75 82.7
Oeu010217.3 Olea europaea HOM05D005881 ORTHO05D007298 1.4e-30 136.0 82 75.6
PGR042G2514 Punica granatum HOM05D005881 ORTHO05D007298 1.4e-30 136.0 77 79.2
Aa31LG6G3200 Aethionema arabicum HOM05D005881 ORTHO05D007298 1.8e-30 135.6 79 77.2
HanXRQChr17g0543881 Helianthus annuus HOM05D005881 ORTHO05D007298 1.8e-30 135.6 79 81.0
Lsat_1_v5_gn_9_121521 Lactuca sativa HOM05D005881 ORTHO05D007298 1.8e-30 135.6 81 76.5
Atru.chr6.354 Acer truncatum HOM05D005881 ORTHO05D007298 3.0e-30 134.8 81 72.8
AUR62022918 Chenopodium quinoa HOM05D005881 ORTHO05D007298 3.0e-30 134.8 80 77.5
Eucgr.K01416 Eucalyptus grandis HOM05D005881 ORTHO05D007298 3.0e-30 134.8 77 77.9
MBI06_g43454_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 3.0e-30 134.8 83 75.9
Os02g0560450 Oryza sativa ssp. japonica HOM05D005881 ORTHO05D007298 3.0e-30 134.8 83 74.7
Sp7g19280 Schrenkiella parvula HOM05D005881 ORTHO05D007298 3.0e-30 134.8 78 78.2
AT4G21192 Arabidopsis thaliana HOM05D005881 ORTHO05D007298 5.1e-30 134.0 78 76.9
Carub.0007s2023 Capsella rubella HOM05D005881 ORTHO05D007298 5.1e-30 134.0 78 78.2
FvH4_5g29590 Fragaria vesca HOM05D005881 ORTHO05D007298 5.1e-30 134.0 79 77.2
Oeu003780.1 Olea europaea HOM05D005881 ORTHO05D007298 5.1e-30 134.0 82 74.4
AL3G11760 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 6.7e-30 133.7 78 76.9
BcaC01g00708 Brassica carinata HOM05D005881 ORTHO05D007298 6.7e-30 133.7 78 76.9
BolC3t20627H Brassica oleracea HOM05D005881 ORTHO05D007298 6.7e-30 133.7 78 76.9
BraA08t33500Z Brassica rapa HOM05D005881 ORTHO05D007298 6.7e-30 133.7 78 76.9
CANSAT54G2245 Cannabis sativa HOM05D005881 ORTHO05D007298 6.7e-30 133.7 83 74.7
Thhalv10026658m.g Eutrema salsugineum HOM05D005881 ORTHO05D007298 6.7e-30 133.7 78 78.2
Ah.00g001370 Amaranthus hybridus HOM05D005881 ORTHO05D007298 8.8e-30 133.3 80 77.5
AL7G32920 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 1.1e-29 132.9 78 75.6
C03p83470 Brassica napus HOM05D005881 ORTHO05D007298 1.1e-29 132.9 78 76.9
CDE08G1319 Ceratophyllum demersum HOM05D005881 ORTHO05D007298 1.1e-29 132.9 75 80.0
Gohir.1Z049575 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.1e-29 132.9 81 79.0
Gorai.002G000900 Gossypium raimondii HOM05D005881 ORTHO05D007298 1.1e-29 132.9 81 79.0
Sc07g0003630 Simmondsia chinensis HOM05D005881 ORTHO05D007298 1.1e-29 132.9 82 74.4
ECA246G1780 Erigeron canadensis HOM05D005881 ORTHO05D007298 1.5e-29 132.5 81 75.3
Manes.07G028000 Manihot esculenta HOM05D005881 ORTHO05D007298 1.5e-29 132.5 77 77.9
Nn2g11943 Nelumbo nucifera HOM05D005881 ORTHO05D007298 1.5e-29 132.5 81 74.1
Solyc01g103190.3 Solanum lycopersicum HOM05D005881 ORTHO05D007298 1.5e-29 132.5 81 72.8
Sopen01g045620 Solanum pennellii HOM05D005881 ORTHO05D007298 1.5e-29 132.5 81 72.8
CAN.G855.36 Capsicum annuum HOM05D005881 ORTHO05D007298 2.0e-29 132.1 77 77.9
Cc02_g34860 Coffea canephora HOM05D005881 ORTHO05D007298 2.0e-29 132.1 82 74.4
Nitab4.5_0001057g0140 Nicotiana tabacum HOM05D005881 ORTHO05D007298 2.0e-29 132.1 81 72.8
RcHm_v2.0_Chr7g0222581 Rosa chinensis HOM05D005881 ORTHO05D007298 2.0e-29 132.1 83 73.5
Peaxi162Scf00450g00736 Petunia axillaris HOM05D005881 ORTHO05D007298 2.6e-29 131.7 81 74.1
Sopen01g045600 Solanum pennellii HOM05D005881 ORTHO05D007298 2.6e-29 131.7 81 72.8
SGA_v2.0_scaffold254G45257 Striga asiatica HOM05D005881 ORTHO05D007298 2.6e-29 131.7 76 76.3
CARHR227780 Cardamine hirsuta HOM05D005881 ORTHO05D007298 3.3e-29 131.3 78 74.4
Hma1.2p1_0052F.1_g029890 Hydrangea macrophylla HOM05D005881 ORTHO05D007298 3.3e-29 131.3 77 77.9
TAR623G1668 Trochodendron aralioides HOM05D005881 ORTHO05D007298 3.3e-29 131.3 77 79.2
CSS0041173 Camellia sinensis var. sinensis HOM05D005881 ORTHO05D007298 5.7e-29 130.6 75 78.7
Migut.O00861 Erythranthe guttata HOM05D005881 ORTHO05D007298 9.7e-29 129.8 77 75.3
EL10Ac2g04867 Beta vulgaris HOM05D005881 ORTHO05D007298 2.8e-28 128.3 80 75.0
Migut.N00857 Erythranthe guttata HOM05D005881 ORTHO05D007298 4.8e-28 127.5 74 77.0
A03p52690 Brassica napus HOM05D005881 ORTHO05D007298 1.4e-27 125.9 78 73.1
BcaC06g30655 Brassica carinata HOM05D005881 ORTHO05D007298 1.8e-27 125.6 78 73.1
BraA03t14343Z Brassica rapa HOM05D005881 ORTHO05D007298 1.8e-27 125.6 78 73.1
BcaNung00865 Brassica carinata HOM05D005881 ORTHO05D007298 3.1e-27 124.8 78 71.8
C07p51120 Brassica napus HOM05D005881 ORTHO05D007298 3.1e-27 124.8 78 71.8
BolC7t45612H Brassica oleracea HOM05D005881 ORTHO05D007298 3.1e-27 124.8 78 71.8
GSVIVG01023198001 Vitis vinifera HOM05D005881 ORTHO05D007298 3.1e-27 124.8 77 74.0
FAN18G0030 Fragaria x ananassa HOM05D005881 ORTHO05D007298 9.1e-27 123.2 96 63.5
Gohir.1Z049313 Gossypium hirsutum HOM05D005881 ORTHO05D007298 9.1e-27 123.2 81 74.1
Nitab4.5_0002546g0080 Nicotiana tabacum HOM05D005881 ORTHO05D007298 3.5e-26 121.3 91 63.7
Gohir.A01G140426 Gossypium hirsutum HOM05D005881 ORTHO05D007298 7.7e-26 120.2 70 82.9
Gohir.1Z049675 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.0e-25 119.8 61 86.9
COL.COLO4_17857 Corchorus olitorius HOM05D005881 ORTHO05D007298 2.9e-25 118.2 70 81.4
CsaV3_3G006580 Cucumis sativus L. HOM05D005881 ORTHO05D007298 4.2e-24 114.4 66 78.8
PGSC0003DMG400024874 Solanum tuberosum HOM05D005881 ORTHO05D007298 4.2e-24 114.4 116 50.9
Gohir.1Z049721 Gossypium hirsutum HOM05D005881 ORTHO05D007298 2.7e-23 111.7 72 77.8
Gorai.011G000600 Gossypium raimondii HOM05D005881 ORTHO05D007298 3.6e-23 111.3 72 76.4
Mapoly0035s0117 Marchantia polymorpha HOM05D005881 ORTHO05D007298 3.6e-23 111.3 74 67.6
Zm00001eb244030 Zea mays HOM05D005881 ORTHO05D007298 1.4e-22 109.4 72 70.8
A08p15220 Brassica napus HOM05D005881 ORTHO05D007298 3.0e-22 108.2 71 71.8
Haze_20435 Corylus avellana HOM05D005881 ORTHO05D007298 4.0e-22 107.8 67 74.6
Phvul.006G085400 Phaseolus vulgaris HOM05D005881 ORTHO05D007298 1.5e-21 105.9 50 90.0
Rhsim11G0129900 Rhododendron simsii HOM05D005881 ORTHO05D007298 1.5e-21 105.9 67 73.1
Cfa026049 Carpinus fangiana HOM05D005881 ORTHO05D007298 2.6e-21 105.1 70 70.0
Cfa021151 Carpinus fangiana HOM05D005881 ORTHO05D007298 5.7e-21 104.0 67 71.6
SGA_v2.0_scaffold131G34400 Striga asiatica HOM05D005881 ORTHO05D007298 5.7e-21 104.0 65 70.8
MBI06_g45555_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 1.3e-20 102.8 70 70.0
AagrBONN_evm.TU.Sc2ySwM_117.2390 Anthoceros agrestis HOM05D005881 ORTHO05D007298 1.7e-20 102.4 79 60.8
unitig_22.g6105 Utricularia gibba HOM05D005881 ORTHO05D007298 2.2e-20 102.1 66 72.7
Nitab4.5_0001057g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 4.8e-20 100.9 63 73.0
Rhsim06G0200500 Rhododendron simsii HOM05D005881 ORTHO05D007298 2.7e-18 95.1 61 72.1
EL10Ac4g07780 Beta vulgaris HOM05D000065 ORTHO05D002939 3.5e-18 94.7 51 80.4
EL10Ac4g07877 Beta vulgaris HOM05D005881 ORTHO05D007298 3.5e-18 94.7 51 80.4
Haze_10676 Corylus avellana HOM05D005881 ORTHO05D007298 3.5e-18 94.7 67 68.7
Haze_09300 Corylus avellana HOM05D005881 ORTHO05D007298 1.7e-17 92.4 67 68.7
BcaC02g10665 Brassica carinata HOM05D005881 ORTHO05D007298 5.0e-17 90.9 48 77.1
C04p26430 Brassica napus HOM05D005881 ORTHO05D007298 5.0e-17 90.9 48 77.1
BolC4t24162H Brassica oleracea HOM05D005881 ORTHO05D007298 5.0e-17 90.9 48 77.1
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 8.5e-17 90.1 83 55.4
Haze_10008 Corylus avellana HOM05D000045 ORTHO05D001346 2.5e-16 88.6 65 63.1
EL10Ac7g16281 Beta vulgaris HOM05D005881 ORTHO05D007298 1.4e-14 82.8 66 60.6
HPP92_009201 Vanilla planifolia HOM05D005881 ORTHO05D007298 2.0e-13 79.0 52 71.2
arahy.Tifrunner.gnm1.ann1.0A1TZX Arachis hypogaea HOM05D001400 ORTHO05D016394 1.4e-11 72.8 36 80.6
MELO3C032219.2 Cucumis melo HOM05D005881 ORTHO05D007298 1.6e-10 69.3 35 77.1
MBI06_g35042_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 3.8e-09 64.7 62 53.2
MCO07G551 Micromonas commoda HOM05D005881 ORTHO05D007298 8.5e-09 63.5 71 40.8
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 2.5e-08 62.0 71 47.9
Nitab4.5_0001129g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 1.6e-07 59.3 43 69.8
SHI38298 Sapria himalayana HOM05D005881 ORTHO05D000001 1.6e-07 59.3 39 61.5


User provided reference genes

Program Settings