Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr3g045740 Medicago truncatula HOM05D000222 ORTHO05D260828 5.4e-82 307.8 171 100.0
Psat7g083280 Pisum sativum HOM05D000222 ORTHO05D004962 3.0e-16 89.4 58 82.8
TPR.G5124 Trifolium pratense HOM05D000222 ORTHO05D004962 7.4e-15 84.7 58 81.0
Ca_11582_v3 Cicer arietinum L. HOM05D000222 ORTHO05D004962 3.1e-13 79.3 56 80.4
arahy.Tifrunner.gnm1.ann1.EPT9JX Arachis hypogaea HOM05D000222 ORTHO05D004962 6.5e-11 71.6 56 69.6
arahy.Tifrunner.gnm1.ann1.J9EPM7 Arachis hypogaea HOM05D000222 ORTHO05D004962 6.5e-11 71.6 56 69.6
Glyma.05G138900 Glycine max HOM05D000222 ORTHO05D004962 1.2e-09 67.4 55 69.1
Glyma.08G094100 Glycine max HOM05D000222 ORTHO05D004962 4.6e-09 65.5 55 67.3
Lj4g0012229 Lotus japonicus HOM05D000222 ORTHO05D004962 6.1e-09 65.1 55 65.5
VMungo0251G0007 Vigna mungo HOM05D000222 ORTHO05D004962 6.1e-09 65.1 56 66.1
Lalb_Chr13g0293651 Lupinus albus HOM05D000222 ORTHO05D004962 1.3e-08 63.9 56 64.3
Oeu054230.1 Olea europaea HOM05D000222 ORTHO05D004962 8.7e-08 61.2 51 64.7
VMungo1215G2627 Vigna mungo HOM05D000222 ORTHO05D004962 8.7e-08 61.2 55 61.8
Lj2g0002621 Lotus japonicus HOM05D000222 ORTHO05D004962 1.5e-07 60.5 58 58.6
Lalb_Chr07g0187811 Lupinus albus HOM05D000222 ORTHO05D004962 1.5e-07 60.5 55 65.5
Lalb_Chr12g0209391 Lupinus albus HOM05D000222 ORTHO05D004962 1.5e-07 60.5 55 61.8
Lj6A732T72 Lonicera japonica HOM05D000222 ORTHO05D004962 1.9e-07 60.1 48 68.8
Manes.17G086800 Manihot esculenta HOM05D000222 ORTHO05D004962 1.9e-07 60.1 54 61.1
COL.COLO4_27597 Corchorus olitorius HOM05D000222 ORTHO05D004962 3.3e-07 59.3 51 66.7
TWI74G1486 Tripterygium wilfordii HOM05D000222 ORTHO05D004962 3.3e-07 59.3 57 59.6
Duzib248G1586 Durio zibethinus HOM05D000222 ORTHO05D004962 5.7e-07 58.5 45 75.6
Phvul.002G182200 Phaseolus vulgaris HOM05D000222 ORTHO05D004962 5.7e-07 58.5 56 58.9
DCAR_030303 Daucus carota HOM05D000222 ORTHO05D004962 7.4e-07 58.2 53 62.3
Gohir.A13G029500 Gossypium hirsutum HOM05D000222 ORTHO05D004962 7.4e-07 58.2 50 70.0
Thecc.02G305400 Theobroma cacao HOM05D000222 ORTHO05D004962 7.4e-07 58.2 45 75.6
Manes.15G137700 Manihot esculenta HOM05D000222 ORTHO05D004962 9.7e-07 57.8 51 64.7
RcHm_v2.0_Chr4g0442161 Rosa chinensis HOM05D000222 ORTHO05D004962 9.7e-07 57.8 52 65.4
Dinv14377 Davidia involucrata HOM05D000222 ORTHO05D004962 1.3e-06 57.4 51 62.7
Gohir.D13G027800 Gossypium hirsutum HOM05D000222 ORTHO05D004962 1.3e-06 57.4 51 66.7
Gorai.013G031700 Gossypium raimondii HOM05D000222 ORTHO05D004962 1.3e-06 57.4 51 66.7
MD13G1016800 Malus domestica HOM05D000222 ORTHO05D004962 1.3e-06 57.4 51 64.7
CANSAT78G2041 Cannabis sativa HOM05D000222 ORTHO05D004962 1.6e-06 57.0 46 71.7
Cfa015061 Carpinus fangiana HOM05D000222 ORTHO05D004962 1.6e-06 57.0 51 62.7
CiPaw.06G056800 Carya illinoinensis HOM05D000222 ORTHO05D004962 2.2e-06 56.6 54 59.3
Glyma.20G012600 Glycine max HOM05D000222 ORTHO05D004962 2.2e-06 56.6 55 58.2
Potri.010G102600 Populus trichocarpa HOM05D000222 ORTHO05D004962 2.2e-06 56.6 54 59.3
QL03p038766 Quercus lobata HOM05D000222 ORTHO05D004962 2.2e-06 56.6 54 61.1
Haze_10830 Corylus avellana HOM05D000222 ORTHO05D004962 2.8e-06 56.2 51 62.7
Prupe.1G336600 Prunus persica HOM05D000222 ORTHO05D004962 2.8e-06 56.2 51 64.7
Ciclev10014296m.g Citrus clementina HOM05D000222 ORTHO05D004962 3.7e-06 55.8 57 57.9
FvH4_4g33110 Fragaria vesca HOM05D000222 ORTHO05D004962 3.7e-06 55.8 52 61.5
FAN12G2155 Fragaria x ananassa HOM05D000222 ORTHO05D004962 3.7e-06 55.8 52 61.5
FAN22G0304 Fragaria x ananassa HOM05D000222 ORTHO05D004962 3.7e-06 55.8 52 61.5
Lj3A861T64 Lonicera japonica HOM05D000222 ORTHO05D004962 3.7e-06 55.8 45 66.7
Sabra10G0075300 Salix brachista HOM05D000222 ORTHO05D004962 3.7e-06 55.8 54 59.3
CSS0002438 Camellia sinensis var. sinensis HOM05D000222 ORTHO05D004962 4.8e-06 55.5 45 66.7
FAN07G1810 Fragaria x ananassa HOM05D000222 ORTHO05D004962 4.8e-06 55.5 52 61.5
FAN17G0744 Fragaria x ananassa HOM05D000222 ORTHO05D004962 4.8e-06 55.5 52 61.5
Hma1.2p1_0037F.1_g023820 Hydrangea macrophylla HOM05D000222 ORTHO05D004962 4.8e-06 55.5 65 50.8
MD16G1014700 Malus domestica HOM05D000222 ORTHO05D004962 4.8e-06 55.5 51 62.7
Sabra08G0105200 Salix brachista HOM05D000222 ORTHO05D004962 6.3e-06 55.1 54 55.6
AT1G14740 Arabidopsis thaliana HOM05D000222 ORTHO05D004962 8.2e-06 54.7 54 57.4
MSTRG.2110 Avicennia marina HOM05D000222 ORTHO05D004962 8.2e-06 54.7 80 45.0
CiPaw.05G188400 Carya illinoinensis HOM05D000222 ORTHO05D004962 8.2e-06 54.7 51 60.8
ClCG01G006740 Citrullus lanatus HOM05D000222 ORTHO05D004962 8.2e-06 54.7 53 56.6
Potri.008G138100 Populus trichocarpa HOM05D000222 ORTHO05D004962 8.2e-06 54.7 54 55.6


User provided reference genes

Program Settings