Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr3g035860 Medicago truncatula HOM05D002585 ORTHO05D002917 2.5e-112 408.7 195 100.0
Medtr3g035970 Medicago truncatula HOM05D002585 ORTHO05D002917 1.8e-70 269.6 146 89.7
Psat6g075720 Pisum sativum HOM05D002585 ORTHO05D002917 2.1e-58 229.6 147 78.9
Medtr0417s0020 Medicago truncatula HOM05D002585 ORTHO05D002917 4.0e-57 225.3 148 76.4
Medtr1g062650 Medicago truncatula HOM05D002585 ORTHO05D002917 1.5e-56 223.4 148 77.0
Medtr1g062620 Medicago truncatula HOM05D002585 ORTHO05D002917 2.0e-56 223.0 148 75.7
Medtr1g062470 Medicago truncatula HOM05D002585 ORTHO05D002917 2.6e-56 222.6 147 76.2
TPR.G30717 Trifolium pratense HOM05D002585 ORTHO05D002917 5.8e-56 221.5 148 75.7
Psat0s3029g0040 Pisum sativum HOM05D002585 ORTHO05D002917 1.4e-54 216.9 148 74.3
Psat6g071560 Pisum sativum HOM05D002585 ORTHO05D002917 1.9e-54 216.5 148 73.6
Ca_11569_v3 Cicer arietinum L. HOM05D002585 ORTHO05D002917 2.0e-53 213.0 148 72.3
Psat6g076360 Pisum sativum HOM05D002585 ORTHO05D002917 6.0e-53 211.5 152 69.7
Lj5g0002795 Lotus japonicus HOM05D002585 ORTHO05D002917 1.3e-52 210.3 148 74.3
Glyma.10G060200 Glycine max HOM05D002585 ORTHO05D002917 2.3e-52 209.5 148 72.3
Lalb_Chr21g0315161 Lupinus albus HOM05D002585 ORTHO05D002917 2.3e-52 209.5 148 73.0
VMungo0720G3162 Vigna mungo HOM05D002585 ORTHO05D002917 6.6e-52 208.0 148 70.9
Phvul.007G152500 Phaseolus vulgaris HOM05D002585 ORTHO05D002917 9.5e-51 204.1 148 70.3
CiPaw.09G003100 Carya illinoinensis HOM05D002585 ORTHO05D002917 2.2e-47 193.0 150 67.3
Haze_19443 Corylus avellana HOM05D002585 ORTHO05D002917 1.1e-46 190.7 150 67.3
FAN05G4117 Fragaria x ananassa HOM05D002585 ORTHO05D002917 3.2e-46 189.1 150 68.0
Manes.08G013700 Manihot esculenta HOM05D002585 ORTHO05D002917 3.2e-46 189.1 187 57.2
FvH4_6g16930 Fragaria vesca HOM05D002585 ORTHO05D002917 4.1e-46 188.7 150 68.0
FAN05G4263 Fragaria x ananassa HOM05D002585 ORTHO05D002917 4.1e-46 188.7 150 68.0
FAN09G3171 Fragaria x ananassa HOM05D002585 ORTHO05D002917 4.1e-46 188.7 150 68.0
FAN14G4746 Fragaria x ananassa HOM05D002585 ORTHO05D002917 4.1e-46 188.7 150 68.0
Dinv37345 Davidia involucrata HOM05D002585 ORTHO05D002917 5.4e-46 188.3 150 64.7
Cfa021472 Carpinus fangiana HOM05D002585 ORTHO05D002917 9.2e-46 187.6 150 66.7
QL07p042117 Quercus lobata HOM05D002585 ORTHO05D002917 1.6e-45 186.8 149 65.1
Thecc.05G072300 Theobroma cacao HOM05D002585 ORTHO05D002917 1.6e-45 186.8 150 67.3
FAN02G4184 Fragaria x ananassa HOM05D002585 ORTHO05D002917 2.1e-45 186.4 150 68.0
RcHm_v2.0_Chr5g0018301 Rosa chinensis HOM05D002585 ORTHO05D002917 2.7e-45 186.0 150 66.0
RcHm_v2.0_Chr3g0470971 Rosa chinensis HOM05D002585 ORTHO05D002917 4.6e-45 185.3 150 66.0
AUR62026959 Chenopodium quinoa HOM05D002585 ORTHO05D002917 1.0e-44 184.1 150 62.7
CSS0049154 Camellia sinensis var. sinensis HOM05D002585 ORTHO05D002917 1.3e-44 183.7 187 56.1
COL.COLO4_26904 Corchorus olitorius HOM05D002585 ORTHO05D002917 1.3e-44 183.7 150 66.0
TAR369G0251 Trochodendron aralioides HOM05D002585 ORTHO05D002917 1.3e-44 183.7 187 56.7
Gohir.A04G069800 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.7e-44 183.3 157 63.7
Gorai.009G412500 Gossypium raimondii HOM05D002585 ORTHO05D002917 1.7e-44 183.3 187 57.2
Gohir.D04G108400 Gossypium hirsutum HOM05D002585 ORTHO05D002917 2.3e-44 183.0 187 57.2
Prupe.7G124800 Prunus persica HOM05D002585 ORTHO05D002917 2.3e-44 183.0 150 65.3
Hund20555 Selenicereus undatus HOM05D002585 ORTHO05D002917 2.3e-44 183.0 150 61.3
Actinidia28922 Actinidia chinensis HOM05D002585 ORTHO05D002917 3.0e-44 182.6 150 64.0
Duzib093G2252 Durio zibethinus HOM05D002585 ORTHO05D002917 3.9e-44 182.2 150 66.0
THA.LOC104825825 Tarenaya hassleriana HOM05D002585 ORTHO05D002917 6.6e-44 181.4 150 63.3
EL10Ac7g16696 Beta vulgaris HOM05D002585 ORTHO05D002917 8.6e-44 181.0 150 60.0
Eucgr.A01617 Eucalyptus grandis HOM05D002585 ORTHO05D002917 1.1e-43 180.6 157 60.5
Manes.08G013600 Manihot esculenta HOM05D002585 ORTHO05D002917 1.9e-43 179.9 195 53.3
PSO063G7003 Papaver somniferum HOM05D002585 ORTHO05D002917 1.9e-43 179.9 149 61.7
Potri.006G121000 Populus trichocarpa HOM05D002585 ORTHO05D002917 1.9e-43 179.9 186 56.5
AUR62041382 Chenopodium quinoa HOM05D002585 ORTHO05D002917 3.3e-43 179.1 150 60.7
MD00G1214800 Malus domestica HOM05D002585 ORTHO05D002917 4.3e-43 178.7 150 62.0
PSO339G5475 Papaver somniferum HOM05D002585 ORTHO05D002917 5.6e-43 178.3 149 62.4
Gohir.D01G129800 Gossypium hirsutum HOM05D002585 ORTHO05D002917 7.3e-43 177.9 150 62.7
Oeu041475.1 Olea europaea HOM05D002585 ORTHO05D002917 7.3e-43 177.9 196 54.6
MBI17_g25733_MAGBIO Magnolia biondii HOM05D002585 ORTHO05D002917 1.2e-42 177.2 151 61.6
Lj3A991G23 Lonicera japonica HOM05D002585 ORTHO05D002917 1.6e-42 176.8 150 60.7
GSVIVG01033692001 Vitis vinifera HOM05D002585 ORTHO05D002917 2.1e-42 176.4 150 61.3
Atru.chr8.1743 Acer truncatum HOM05D002585 ORTHO05D002917 2.8e-42 176.0 150 62.7
ECA233G1422 Erigeron canadensis HOM05D002585 ORTHO05D002917 2.8e-42 176.0 187 53.5
Sed0026659 Sechium edule HOM05D002585 ORTHO05D002917 3.6e-42 175.6 190 50.5
CAN.G541.44 Capsicum annuum HOM05D002585 ORTHO05D002917 4.7e-42 175.3 150 60.7
Gorai.002G160800 Gossypium raimondii HOM05D002585 ORTHO05D002917 4.7e-42 175.3 150 62.7
Cpa.g.sc5.155 Carica papaya HOM05D002585 ORTHO05D002917 6.2e-42 174.9 150 60.7
ClCG04G009500 Citrullus lanatus HOM05D002585 ORTHO05D002917 6.2e-42 174.9 150 61.3
TWI53G0795 Tripterygium wilfordii HOM05D002585 ORTHO05D002917 6.2e-42 174.9 150 59.3
PGSC0003DMG400028276 Solanum tuberosum HOM05D002585 ORTHO05D002917 8.1e-42 174.5 150 60.0
CANSAT80G2890 Cannabis sativa HOM05D002585 ORTHO05D002917 1.1e-41 174.1 150 60.7
Cc06_g04600 Coffea canephora HOM05D002585 ORTHO05D002917 1.4e-41 173.7 187 51.9
SalBow5G4367 Salvia bowleyana HOM05D002585 ORTHO05D002917 1.4e-41 173.7 150 60.7
Ah.15g091400 Amaranthus hybridus HOM05D002585 ORTHO05D002917 2.4e-41 172.9 169 55.6
Aa31LG10G8350 Aethionema arabicum HOM05D002585 ORTHO05D002917 4.0e-41 172.2 150 60.7
Solyc10g083840.1 Solanum lycopersicum HOM05D002585 ORTHO05D002917 4.0e-41 172.2 150 59.3
Sopen10g033280 Solanum pennellii HOM05D002585 ORTHO05D002917 4.0e-41 172.2 150 59.3
HanXRQChr05g0144541 Helianthus annuus HOM05D002585 ORTHO05D002917 8.9e-41 171.0 196 49.5
PGR004G2132 Punica granatum HOM05D002585 ORTHO05D002917 8.9e-41 171.0 150 62.0
Hma1.2p1_0547F.1_g176480 Hydrangea macrophylla HOM05D002585 ORTHO05D002917 1.2e-40 170.6 150 60.0
Ciclev10011061m.g Citrus clementina HOM05D002585 ORTHO05D002917 1.5e-40 170.2 187 54.0
SalBow5G3646 Salvia bowleyana HOM05D002585 ORTHO05D002917 2.0e-40 169.9 150 60.0
CANSAT80G1527 Cannabis sativa HOM05D002585 ORTHO05D002917 3.4e-40 169.1 150 58.7
Lsat_1_v5_gn_8_145640 Lactuca sativa HOM05D002585 ORTHO05D002917 3.4e-40 169.1 187 51.3
AL5G34060 Arabidopsis lyrata HOM05D002585 ORTHO05D002917 4.4e-40 168.7 150 58.0
Carub.0005s1971 Capsella rubella HOM05D002585 ORTHO05D002917 9.9e-40 167.5 150 57.3
AT3G53180 Arabidopsis thaliana HOM05D002585 ORTHO05D002917 2.9e-39 166.0 150 58.0
MSTRG.26675 Avicennia marina HOM05D002585 ORTHO05D002917 2.9e-39 166.0 150 57.3
Migut.L01723 Erythranthe guttata HOM05D002585 ORTHO05D002917 4.9e-39 165.2 150 58.0
BcaB01g00304 Brassica carinata HOM05D002585 ORTHO05D002917 1.1e-38 164.1 150 58.7
MELO3C024485.2 Cucumis melo HOM05D002585 ORTHO05D002917 1.1e-38 164.1 150 58.7
Aqoxy195s007 Aquilegia oxysepala HOM05D002585 ORTHO05D002917 1.9e-38 163.3 150 58.0
Aqoxy1G01087 Aquilegia oxysepala HOM05D002585 ORTHO05D002917 1.9e-38 163.3 150 58.0
Sed0005893 Sechium edule HOM05D002585 ORTHO05D002917 1.9e-38 163.3 188 48.9
Sed0002653 Sechium edule HOM05D002585 ORTHO05D002917 2.4e-38 162.9 151 55.6
Sabra06G0095200 Salix brachista HOM05D002585 ORTHO05D002917 3.2e-38 162.5 225 47.1
CARHR163130 Cardamine hirsuta HOM05D002585 ORTHO05D002917 4.1e-38 162.2 149 57.7
Thhalv10010120m.g Eutrema salsugineum HOM05D002585 ORTHO05D002917 4.1e-38 162.2 150 56.7
A09p46170 Brassica napus HOM05D002585 ORTHO05D002917 5.4e-38 161.8 150 57.3
BraA09t40081Z Brassica rapa HOM05D002585 ORTHO05D002917 5.4e-38 161.8 150 57.3
Zm00001eb046790 Zea mays HOM05D002585 ORTHO05D002917 5.4e-38 161.8 150 58.0
C08p28400 Brassica napus HOM05D002585 ORTHO05D002917 7.1e-38 161.4 150 56.7
CsaV3_6G040120 Cucumis sativus L. HOM05D002585 ORTHO05D002917 1.2e-37 160.6 150 55.3
CsaV3_6G040130 Cucumis sativus L. HOM05D002585 ORTHO05D002917 2.7e-37 159.5 150 55.3
Sp5g09150 Schrenkiella parvula HOM05D002585 ORTHO05D002917 4.6e-37 158.7 150 55.3
BcaC07g39674 Brassica carinata HOM05D002585 ORTHO05D002917 7.8e-37 157.9 150 56.0
BolC8t50450H Brassica oleracea HOM05D002585 ORTHO05D002917 7.8e-37 157.9 150 56.0
HPP92_008392 Vanilla planifolia HOM05D002585 ORTHO05D002917 1.0e-36 157.5 150 53.3
MELO3C024486.2 Cucumis melo HOM05D002585 ORTHO05D002917 1.3e-36 157.1 150 56.7
Sed0020289 Sechium edule HOM05D002585 ORTHO05D002917 6.6e-36 154.8 187 47.1
CANSAT35G1791 Cannabis sativa HOM05D002585 ORTHO05D002917 1.1e-35 154.1 151 55.0
ClCG00G005960 Citrullus lanatus HOM05D002585 ORTHO05D002917 1.1e-35 154.1 190 48.4
ClCG04G009510 Citrullus lanatus HOM05D002585 ORTHO05D002917 1.1e-35 154.1 150 56.0
Peaxi162Scf00110g00619 Petunia axillaris HOM05D002585 ORTHO05D002917 3.3e-35 152.5 132 61.4
BcaC08g44624 Brassica carinata HOM05D002585 ORTHO05D002917 1.2e-34 150.6 150 54.0
C06p21020 Brassica napus HOM05D002585 ORTHO05D002917 1.2e-34 150.6 150 54.0
BolC6t37286H Brassica oleracea HOM05D002585 ORTHO05D002917 1.2e-34 150.6 150 54.0
BraA07t29828Z Brassica rapa HOM05D002585 ORTHO05D002917 1.2e-34 150.6 150 54.0
DCAR_015012 Daucus carota HOM05D002585 ORTHO05D002917 2.1e-34 149.8 130 59.2
Nn6g35210 Nelumbo nucifera HOM05D002585 ORTHO05D002917 2.8e-34 149.4 150 53.3
Rhsim03G0088700 Rhododendron simsii HOM05D002585 ORTHO05D002917 3.6e-34 149.1 131 58.8
Nitab4.5_0000132g0480 Nicotiana tabacum HOM05D002585 ORTHO05D002917 4.7e-34 148.7 124 62.9
Nitab4.5_0005208g0050 Nicotiana tabacum HOM05D002585 ORTHO05D002917 6.2e-34 148.3 129 60.5
A07p21410 Brassica napus HOM05D002585 ORTHO05D002917 8.1e-34 147.9 150 53.3
QL07p042139 Quercus lobata HOM05D002585 ORTHO05D002917 1.4e-33 147.1 129 62.0
vmacro07324 Vaccinium macrocarpon HOM05D002585 ORTHO05D002917 3.1e-33 146.0 142 54.9
arahy.Tifrunner.gnm1.ann1.YR6AFM Arachis hypogaea HOM05D002585 ORTHO05D002917 1.2e-32 144.1 101 71.3
Peaxi162Scf00837g00009 Petunia axillaris HOM05D002585 ORTHO05D002917 7.6e-32 141.4 126 59.5
unitig_8.g4719 Utricularia gibba HOM05D002585 ORTHO05D002917 1.4e-30 137.1 148 50.7
Sed0005462 Sechium edule HOM05D002585 ORTHO05D002917 2.4e-30 136.3 191 44.5
Sed0022969 Sechium edule HOM05D002585 ORTHO05D002917 3.2e-30 136.0 170 45.3
ATR0043G008 Amborella trichopoda HOM05D002585 ORTHO05D002917 2.7e-29 132.9 124 59.7
Zm00001eb031620 Zea mays HOM05D002585 ORTHO05D002917 3.0e-28 129.4 132 55.3
arahy.Tifrunner.gnm1.ann1.7YQ2TW Arachis hypogaea HOM05D002585 ORTHO05D002917 1.1e-27 127.5 92 71.7
Medtr1g062430 Medicago truncatula HOM05D002585 ORTHO05D002917 1.1e-27 127.5 80 77.5
Pp3c14_19260 Physcomitrium patens HOM05D002585 ORTHO05D002917 1.9e-27 126.7 151 45.0
Pp3c1_32960 Physcomitrium patens HOM05D002585 ORTHO05D002917 2.5e-27 126.3 150 45.3
Psat6g075680 Pisum sativum HOM05D002585 ORTHO05D002917 3.3e-27 125.9 82 78.0
SGA_v2.0_scaffold224G42925 Striga asiatica HOM05D002585 ORTHO05D002917 3.3e-27 125.9 150 49.3
Nitab4.5_0000132g0100 Nicotiana tabacum HOM05D002585 ORTHO05D002917 2.1e-26 123.2 150 47.3
Nitab4.5_0000963g0030 Nicotiana tabacum HOM05D002585 ORTHO05D002917 2.1e-26 123.2 143 50.3
Peaxi162Scf00163g00216 Petunia axillaris HOM05D002585 ORTHO05D002917 2.1e-26 123.2 150 47.3
Peaxi162Scf00110g00034 Petunia axillaris HOM05D002585 ORTHO05D002917 2.8e-26 122.9 150 48.0
Dinv35818 Davidia involucrata HOM05D002585 ORTHO05D002917 9.0e-25 117.9 163 46.6
SHI27841 Sapria himalayana HOM05D002585 ORTHO05D002917 9.0e-25 117.9 157 47.8
Zm00001eb056640 Zea mays HOM05D002585 ORTHO05D002917 9.0e-25 117.9 115 56.5
Sopen10g033020 Solanum pennellii HOM05D002585 ORTHO05D002917 1.2e-24 117.5 148 43.2
PGSC0003DMG400028171 Solanum tuberosum HOM05D002585 ORTHO05D002917 1.5e-24 117.1 157 43.3
Zm00001eb059870 Zea mays HOM05D002585 ORTHO05D002917 1.5e-24 117.1 104 61.5
Sopen06g005510 Solanum pennellii HOM05D002585 ORTHO05D002917 3.4e-24 115.9 157 40.8
Mapoly0010s0006 Marchantia polymorpha HOM05D002585 ORTHO05D002917 2.9e-23 112.8 136 41.9
CAN.G1138.22 Capsicum annuum HOM05D002585 ORTHO05D002917 3.8e-23 112.5 150 42.0
Medtr1g062410 Medicago truncatula HOM05D002585 ORTHO05D002917 1.9e-22 110.2 67 80.6
Peaxi162Scf00780g01019 Petunia axillaris HOM05D002585 ORTHO05D002917 9.3e-22 107.8 161 39.1
Peaxi162Scf00958g00520 Petunia axillaris HOM05D002585 ORTHO05D002917 9.3e-22 107.8 161 39.1
Peaxi162Scf02002g00013 Petunia axillaris HOM05D002585 ORTHO05D002917 1.2e-21 107.5 82 64.6
arahy.Tifrunner.gnm1.ann1.SIB7C5 Arachis hypogaea HOM05D002585 ORTHO05D002917 2.3e-20 103.2 70 71.4
SMO367G0811 Selaginella moellendorffii HOM05D002585 ORTHO05D002917 5.1e-20 102.1 124 48.4
Zm00001eb320250 Zea mays HOM05D002585 ORTHO05D002917 1.5e-19 100.5 76 67.1
Nitab4.5_0007292g0030 Nicotiana tabacum HOM05D002585 ORTHO05D002917 9.6e-19 97.8 133 41.4
Zm00001eb162900 Zea mays HOM05D002585 ORTHO05D002917 9.6e-19 97.8 90 55.6
PGSC0003DMG400028277 Solanum tuberosum HOM05D002585 ORTHO05D002917 1.3e-18 97.4 155 38.7
PGSC0003DMG403009595 Solanum tuberosum HOM05D002585 ORTHO05D002917 2.1e-18 96.7 154 37.0
Pp3c22_1270 Physcomitrium patens HOM05D002585 ORTHO05D002917 1.8e-17 93.6 135 39.3
Sopen10g033290 Solanum pennellii HOM05D002585 ORTHO05D002917 1.8e-17 93.6 155 37.4
Pp3c21_9940 Physcomitrium patens HOM05D002585 ORTHO05D002917 2.4e-17 93.2 149 36.2
Nitab4.5_0003945g0150 Nicotiana tabacum HOM05D002585 ORTHO05D002917 3.1e-17 92.8 117 46.2
PGSC0003DMG400019011 Solanum tuberosum HOM05D002585 ORTHO05D002917 6.9e-17 91.7 124 41.9
Zm00001eb398810 Zea mays HOM05D002585 ORTHO05D002917 9.0e-17 91.3 87 54.0
Sopen01g019530 Solanum pennellii HOM05D002585 ORTHO05D002917 1.5e-16 90.5 124 38.7
Nitab4.5_0000181g0090 Nicotiana tabacum HOM05D002585 ORTHO05D002917 5.8e-16 88.6 133 39.8
Sopen01g025450 Solanum pennellii HOM05D002585 ORTHO05D002917 7.6e-16 88.2 153 35.3
CAN.G541.45 Capsicum annuum HOM05D002585 ORTHO05D002917 1.7e-15 87.0 144 36.8
arahy.Tifrunner.gnm1.ann1.7710RN Arachis hypogaea HOM05D002585 ORTHO05D002917 2.2e-15 86.7 61 72.1
Nitab4.5_0000217g0050 Nicotiana tabacum HOM05D002585 ORTHO05D002917 3.8e-15 85.9 124 39.5
Solyc10g083550.1 Solanum lycopersicum HOM05D002585 ORTHO05D002917 2.1e-13 80.1 88 46.6
Peaxi162Scf00247g01011 Petunia axillaris HOM05D002585 ORTHO05D002917 2.7e-13 79.7 94 41.5
Solyc10g083850.3 Solanum lycopersicum HOM05D002585 ORTHO05D002917 1.8e-12 77.0 147 32.0
Nitab4.5_0003388g0010 Nicotiana tabacum HOM05D002585 ORTHO05D002917 1.5e-11 73.9 80 47.5
Solyc01g056450.3 Solanum lycopersicum HOM05D002585 ORTHO05D002917 2.5e-11 73.2 103 38.8
Cfa024801 Carpinus fangiana HOM05D002585 ORTHO05D002917 3.7e-10 69.3 129 40.3
Cre03.g146627 Chlamydomonas reinhardtii HOM05D002585 ORTHO05D002917 1.2e-08 64.3 146 30.8
CBR_g51525 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-08 63.9 81 44.4
Nitab4.5_0004314g0020 Nicotiana tabacum HOM05D002585 ORTHO05D002917 3.4e-08 62.8 87 42.5
Peaxi162Scf00529g00036 Petunia axillaris HOM05D002585 ORTHO05D002917 2.5e-06 56.6 63 39.7
AagrBONN_evm.TU.Sc2ySwM_344.424 Anthoceros agrestis HOM05D002585 ORTHO05D002917 4.2e-06 55.8 116 28.4


User provided reference genes

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