Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr0002s0250 Medicago truncatula HOM05D001966 ORTHO05D007227 1.8e-50 202.2 99 100.0
Medtr3g035620 Medicago truncatula HOM05D001966 ORTHO05D007227 1.8e-50 202.2 99 100.0
arahy.Tifrunner.gnm1.ann1.ZHN7AL Arachis hypogaea HOM05D001966 ORTHO05D007227 4.7e-46 187.6 99 93.9
arahy.Tifrunner.gnm1.ann1.77ZW6W Arachis hypogaea HOM05D001966 ORTHO05D007227 6.1e-46 187.2 98 93.9
arahy.Tifrunner.gnm1.ann1.EGZ6K4 Arachis hypogaea HOM05D001966 ORTHO05D007227 6.1e-46 187.2 98 93.9
arahy.Tifrunner.gnm1.ann1.KZKE62 Arachis hypogaea HOM05D001966 ORTHO05D007227 6.1e-46 187.2 98 93.9
arahy.Tifrunner.gnm1.ann1.JURL6Q Arachis hypogaea HOM05D001966 ORTHO05D007227 5.2e-45 184.1 99 91.9
arahy.Tifrunner.gnm1.ann1.WI2XKB Arachis hypogaea HOM05D001966 ORTHO05D007227 4.4e-44 181.0 98 91.8
RhsimPtG0005300 Rhododendron simsii HOM05D001966 ORTHO05D007227 8.3e-43 176.8 99 90.9
Cfa023004 Carpinus fangiana HOM05D001966 ORTHO05D007227 3.1e-42 174.9 99 89.9
ClCG02G009760 Citrullus lanatus HOM05D001966 ORTHO05D000002 9.1e-42 173.3 98 88.8
HPP92_028385 Vanilla planifolia HOM05D001966 ORTHO05D007227 2.0e-41 172.2 99 86.9
EL10As10g23965 Beta vulgaris HOM05D001966 ORTHO05D007227 3.8e-40 167.9 100 87.0
Sc25g0002010 Simmondsia chinensis HOM05D001966 ORTHO05D007227 3.8e-40 167.9 101 87.1
DCAR_001522 Daucus carota HOM05D001966 ORTHO05D007227 8.6e-40 166.8 99 84.8
arahy.Tifrunner.gnm1.ann1.6ZZ12G Arachis hypogaea HOM05D001966 ORTHO05D007227 4.2e-39 164.5 93 86.0
Sed0014217 Sechium edule HOM05D001966 ORTHO05D007227 9.5e-39 163.3 98 83.7
CDE02G0843 Ceratophyllum demersum HOM05D001966 ORTHO05D007227 1.6e-38 162.5 92 88.0
arahy.Tifrunner.gnm1.ann1.I9YN8I Arachis hypogaea HOM05D001966 ORTHO05D007227 1.2e-36 156.4 94 80.9
LjContig00319g0014927 Lotus japonicus HOM05D001966 ORTHO05D007227 2.6e-36 155.2 99 82.8
EL10As6g23662 Beta vulgaris HOM05D001325 ORTHO05D001540 4.4e-36 154.5 88 88.6
arahy.Tifrunner.gnm1.ann1.3I0RGA Arachis hypogaea HOM05D001966 ORTHO05D007227 1.3e-35 152.9 93 80.6
EL10Ac8g19705 Beta vulgaris HOM05D001966 ORTHO05D007227 8.3e-35 150.2 101 80.2
SHI36539 Sapria himalayana HOM05D001966 ORTHO05D007227 1.3e-32 142.9 78 93.6
SHI36394 Sapria himalayana HOM05D001966 ORTHO05D007227 1.5e-31 139.4 78 88.5
Gohir.1Z049882 Gossypium hirsutum HOM05D001966 ORTHO05D007227 9.8e-28 126.7 71 88.7
Gohir.A04G039270 Gossypium hirsutum HOM05D001966 ORTHO05D007227 9.8e-28 126.7 71 88.7
Gohir.A05G323724 Gossypium hirsutum HOM05D001966 ORTHO05D007227 9.8e-28 126.7 71 88.7
Hma1.2p1_0544F.1_g175783 Hydrangea macrophylla HOM05D001966 ORTHO05D007227 1.3e-27 126.3 68 89.7
VMungo0464G1535 Vigna mungo HOM05D001966 ORTHO05D007227 1.4e-26 122.9 73 80.8
VMungo0720G2248 Vigna mungo HOM05D001966 ORTHO05D007227 1.8e-26 122.5 73 80.8
VMungo1127G1224 Vigna mungo HOM05D001966 ORTHO05D007227 4.1e-26 121.3 73 79.5
Sed0012652 Sechium edule HOM05D001966 ORTHO05D007227 5.9e-25 117.5 68 83.8
AL9U11930 Arabidopsis lyrata HOM05D001966 ORTHO05D007227 7.8e-25 117.1 68 83.8
Lsat_1_v5_gn_2_20521 Lactuca sativa HOM05D001966 ORTHO05D007227 1.0e-24 116.7 64 87.5
Lsat_1_v5_gn_3_110440 Lactuca sativa HOM05D001966 ORTHO05D007227 1.0e-24 116.7 64 87.5
Lsat_1_v5_gn_4_147680 Lactuca sativa HOM05D001966 ORTHO05D007227 1.0e-24 116.7 64 87.5
Lsat_1_v5_gn_4_147860 Lactuca sativa HOM05D001966 ORTHO05D007227 1.0e-24 116.7 64 87.5
Lsat_1_v5_gn_5_181880 Lactuca sativa HOM05D001966 ORTHO05D007227 1.0e-24 116.7 64 87.5
Lsat_1_v5_gn_9_39281 Lactuca sativa HOM05D001966 ORTHO05D007227 1.0e-24 116.7 64 87.5
Glyma.08G276350 Glycine max HOM05D001966 ORTHO05D007227 1.3e-24 116.3 96 59.4
C09p24670 Brassica napus HOM05D001966 ORTHO05D007227 3.9e-24 114.8 68 82.4
C09p39340 Brassica napus HOM05D001966 ORTHO05D007227 3.9e-24 114.8 68 82.4
Lsat_1_v5_gn_6_94301 Lactuca sativa HOM05D001966 ORTHO05D007227 3.9e-24 114.8 64 85.9
Phvul.003G067400 Phaseolus vulgaris HOM05D001966 ORTHO05D007227 5.0e-24 114.4 67 79.1
BolSC29t60539H Brassica oleracea HOM05D001966 ORTHO05D007227 1.5e-23 112.8 64 85.9
BolSC29t60556H Brassica oleracea HOM05D001966 ORTHO05D007227 1.5e-23 112.8 64 85.9
BolSC35t60713H Brassica oleracea HOM05D001966 ORTHO05D007227 1.5e-23 112.8 64 85.9
BolSC44t60814H Brassica oleracea HOM05D001966 ORTHO05D007227 1.5e-23 112.8 64 85.9
BolSC45t60900H Brassica oleracea HOM05D001966 ORTHO05D007227 1.5e-23 112.8 64 85.9
BolSC45t60918H Brassica oleracea HOM05D001966 ORTHO05D007227 1.5e-23 112.8 64 85.9
BolSC46t60967H Brassica oleracea HOM05D001966 ORTHO05D007227 1.5e-23 112.8 64 85.9
BolSC49t61133H Brassica oleracea HOM05D001966 ORTHO05D007227 1.5e-23 112.8 64 85.9
BraSC103t45419Z Brassica rapa HOM05D001966 ORTHO05D007227 1.5e-23 112.8 64 85.9
BraSC25t45921Z Brassica rapa HOM05D001966 ORTHO05D007227 1.5e-23 112.8 64 85.9
BraSC59t46509Z Brassica rapa HOM05D001966 ORTHO05D007227 1.5e-23 112.8 64 85.9
BraSC59t46540Z Brassica rapa HOM05D001966 ORTHO05D007227 1.5e-23 112.8 64 85.9
Gohir.D02G016950 Gossypium hirsutum HOM05D001966 ORTHO05D007227 7.3e-23 110.5 63 85.7
Potri.011G074201 Populus trichocarpa HOM05D001966 ORTHO05D007227 7.3e-23 110.5 61 86.9
Aqoxy2G01968 Aquilegia oxysepala HOM05D001966 ORTHO05D007227 1.2e-22 109.8 61 85.2
HPP92_028396 Vanilla planifolia HOM05D001966 ORTHO05D007227 1.2e-22 109.8 91 64.8
HPP92_028404 Vanilla planifolia HOM05D001966 ORTHO05D007227 1.2e-22 109.8 91 64.8
HPP92_028413 Vanilla planifolia HOM05D001966 ORTHO05D007227 1.2e-22 109.8 91 64.8
HPP92_028421 Vanilla planifolia HOM05D001966 ORTHO05D007227 1.2e-22 109.8 91 64.8
HPP92_028428 Vanilla planifolia HOM05D001966 ORTHO05D007227 1.2e-22 109.8 91 64.8
HPP92_028434 Vanilla planifolia HOM05D001966 ORTHO05D007227 1.2e-22 109.8 91 64.8
Sc05g0004050 Simmondsia chinensis HOM05D001966 ORTHO05D007227 2.1e-22 109.0 70 80.0
FAN01G2668 Fragaria x ananassa HOM05D001966 ORTHO05D007227 1.1e-21 106.7 66 84.8
arahy.Tifrunner.gnm1.ann1.8D90VP Arachis hypogaea HOM05D001966 ORTHO05D007227 5.2e-21 104.4 81 66.7
arahy.Tifrunner.gnm1.ann1.F2PHFK Arachis hypogaea HOM05D000890 ORTHO05D000697 6.8e-21 104.0 50 96.0
Gorai.005G020800 Gossypium raimondii HOM05D001966 ORTHO05D007227 6.8e-21 104.0 82 65.9
FvH4_c3g00070 Fragaria vesca HOM05D001966 ORTHO05D007227 8.9e-21 103.6 66 83.3
HanXRQChr05g0134861 Helianthus annuus HOM05D001966 ORTHO05D007227 1.5e-20 102.8 58 84.5
Glyma.09G133875 Glycine max HOM05D001966 ORTHO05D007227 2.0e-20 102.4 61 80.3
ClCG11G009300 Citrullus lanatus HOM05D001966 ORTHO05D007227 2.6e-20 102.1 55 87.3
Psat5g118880 Pisum sativum HOM05D001966 ORTHO05D007227 3.4e-20 101.7 53 98.1
BcaC04g20781 Brassica carinata HOM05D001966 ORTHO05D010449 1.3e-19 99.8 57 84.2
BcaNung07085 Brassica carinata HOM05D001966 ORTHO05D010449 1.3e-19 99.8 57 84.2
Glyma.05G084525 Glycine max HOM05D001966 ORTHO05D007227 3.7e-19 98.2 73 65.8
Sed0001460 Sechium edule HOM05D001966 ORTHO05D007227 1.1e-18 96.7 52 86.5
arahy.Tifrunner.gnm1.ann1.FN7561 Arachis hypogaea HOM05D001966 ORTHO05D007227 1.4e-18 96.3 64 75.0
Lsat_1_v5_gn_3_13340 Lactuca sativa HOM05D001966 ORTHO05D007227 4.1e-18 94.7 57 80.7
BolSC29t60498H Brassica oleracea HOM05D001966 ORTHO05D007227 6.0e-17 90.9 50 86.0
BolSC35t60683H Brassica oleracea HOM05D001966 ORTHO05D007227 6.0e-17 90.9 50 86.0
BolSC44t60831H Brassica oleracea HOM05D001966 ORTHO05D007227 6.0e-17 90.9 50 86.0
CAN.G1441.4 Capsicum annuum HOM05D001966 ORTHO05D007227 1.1e-15 86.7 72 68.1
Atru.chr9.266 Acer truncatum HOM05D001966 ORTHO05D007227 1.9e-15 85.9 51 88.2
arahy.Tifrunner.gnm1.ann1.ZUEQ40 Arachis hypogaea HOM05D000743 ORTHO05D007227 2.5e-15 85.5 56 76.8
arahy.Tifrunner.gnm1.ann1.Q8ISGW Arachis hypogaea HOM05D001966 ORTHO05D007227 7.3e-15 84.0 47 83.0
Peaxi162Scf00080g00518 Petunia axillaris HOM05D001966 ORTHO05D007227 1.2e-14 83.2 52 76.9
Sed0026700 Sechium edule HOM05D001966 ORTHO05D007227 1.2e-14 83.2 95 54.7
Gohir.D02G151976 Gossypium hirsutum HOM05D001966 ORTHO05D010449 1.8e-13 79.3 76 60.5
FAN13G0121 Fragaria x ananassa HOM05D001966 ORTHO05D007227 4.0e-13 78.2 66 68.2
ECA247G0757 Erigeron canadensis HOM05D000006 ORTHO05D000001 6.8e-13 77.4 60 65.0
Hma1.2p1_0544F.1_g175786 Hydrangea macrophylla HOM05D001966 ORTHO05D007227 8.9e-13 77.0 37 94.6
HPP92_008300 Vanilla planifolia HOM05D001966 ORTHO05D007227 1.2e-12 76.6 57 71.9
EL10As15g24131 Beta vulgaris HOM05D001966 ORTHO05D007227 2.6e-12 75.5 52 75.0
Gorai.006G045900 Gossypium raimondii HOM05D001966 ORTHO05D007227 3.4e-12 75.1 49 75.5
TPR.G6399 Trifolium pratense HOM05D001966 ORTHO05D007227 3.4e-12 75.1 64 64.1
arahy.Tifrunner.gnm1.ann1.N1DH3R Arachis hypogaea HOM05D001966 ORTHO05D007227 9.9e-12 73.6 59 66.1
LjContig00318g0013893 Lotus japonicus HOM05D004182 ORTHO05D007321 9.9e-12 73.6 39 92.3
arahy.Tifrunner.gnm1.ann1.EF1F4B Arachis hypogaea HOM05D000963 ORTHO05D010073 2.9e-11 72.0 50 78.0
Sed0008904 Sechium edule HOM05D001966 ORTHO05D007227 1.6e-09 66.2 49 63.3
Oeu041170.1 Olea europaea HOM05D000708 ORTHO05D007227 2.7e-09 65.5 36 91.7
Gohir.D09G040060 Gossypium hirsutum HOM05D001966 ORTHO05D007227 1.1e-07 60.1 48 62.5
arahy.Tifrunner.gnm1.ann1.WHCD0B Arachis hypogaea HOM05D001966 ORTHO05D007227 5.6e-07 57.8 94 40.4
Phvul.003G142600 Phaseolus vulgaris HOM05D001966 ORTHO05D007227 7.3e-07 57.4 36 83.3
Gohir.A09G039165 Gossypium hirsutum HOM05D001966 ORTHO05D007227 1.6e-06 56.2 53 56.6


User provided reference genes

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