Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr3g035610 Medicago truncatula HOM05D000388 ORTHO05D009843 6.0e-49 197.2 101 100.0
LjContig00318g0006350 Lotus japonicus HOM05D000388 ORTHO05D009843 1.2e-41 172.9 101 88.1
Nn020s41509 Nelumbo nucifera HOM05D000388 ORTHO05D009843 3.5e-41 171.4 101 87.1
Nn055s41931 Nelumbo nucifera HOM05D000388 ORTHO05D009843 3.5e-41 171.4 101 87.1
Nn082s42681 Nelumbo nucifera HOM05D000388 ORTHO05D009843 3.5e-41 171.4 101 87.1
Nn287s46145 Nelumbo nucifera HOM05D000388 ORTHO05D009843 3.5e-41 171.4 101 87.1
Lalb_Chr23g0270511 Lupinus albus HOM05D000388 ORTHO05D009843 6.0e-41 170.6 101 87.1
Sed0009296 Sechium edule HOM05D000388 ORTHO05D009843 1.8e-40 169.1 101 86.1
Sed0020360 Sechium edule HOM05D000388 ORTHO05D009843 1.8e-40 169.1 101 86.1
RcHm_v2.0_CPg0502271 Rosa chinensis HOM05D000388 ORTHO05D009843 2.3e-40 168.7 101 86.1
Gohir.D08G129080 Gossypium hirsutum HOM05D000388 ORTHO05D009843 3.0e-40 168.3 101 86.1
HanXRQChr00c0272g0573001 Helianthus annuus HOM05D000388 ORTHO05D009843 3.9e-40 167.9 101 85.1
HanXRQChr00c0439g0574751 Helianthus annuus HOM05D000388 ORTHO05D009843 3.9e-40 167.9 101 85.1
HanXRQChr02g0041691 Helianthus annuus HOM05D000388 ORTHO05D009843 3.9e-40 167.9 101 85.1
HanXRQChr04g0099341 Helianthus annuus HOM05D000388 ORTHO05D009843 3.9e-40 167.9 101 85.1
HanXRQChr05g0151391 Helianthus annuus HOM05D000388 ORTHO05D009843 3.9e-40 167.9 101 85.1
HanXRQChr07g0201051 Helianthus annuus HOM05D000388 ORTHO05D009843 3.9e-40 167.9 101 85.1
HanXRQChr08g0210251 Helianthus annuus HOM05D000388 ORTHO05D009843 3.9e-40 167.9 101 85.1
HanXRQChr10g0282451 Helianthus annuus HOM05D000388 ORTHO05D009843 3.9e-40 167.9 101 85.1
HanXRQChr11g0326691 Helianthus annuus HOM05D000388 ORTHO05D009843 3.9e-40 167.9 101 85.1
HanXRQCPg0579911 Helianthus annuus HOM05D000388 ORTHO05D009843 3.9e-40 167.9 101 85.1
Migut.D01348 Erythranthe guttata HOM05D000388 ORTHO05D009843 5.1e-40 167.5 101 85.1
Migut.J01359 Erythranthe guttata HOM05D000388 ORTHO05D009843 5.1e-40 167.5 101 85.1
RcHm_v2.0_Chr3g0491801 Rosa chinensis HOM05D000388 ORTHO05D009843 5.1e-40 167.5 101 85.1
CAN.G142.10 Capsicum annuum HOM05D000388 ORTHO05D009843 8.7e-40 166.8 101 85.1
CAN.G500.81 Capsicum annuum HOM05D000388 ORTHO05D009843 8.7e-40 166.8 101 85.1
CAN.G653.5 Capsicum annuum HOM05D000388 ORTHO05D009843 8.7e-40 166.8 101 85.1
Gohir.A03G019500 Gossypium hirsutum HOM05D000388 ORTHO05D009843 1.1e-39 166.4 101 85.1
PSO548G0009 Papaver somniferum HOM05D000388 ORTHO05D009843 1.5e-39 166.0 101 84.2
Hma1.2p1_0051F.1_g029490 Hydrangea macrophylla HOM05D000388 ORTHO05D009843 1.9e-39 165.6 101 85.1
BcaC04g20699 Brassica carinata HOM05D000388 ORTHO05D009843 2.5e-39 165.2 101 85.1
BNapus_Darmor_BZH_scaffold_253p00110 Brassica napus HOM05D000388 ORTHO05D009843 4.3e-39 164.5 101 85.1
BNapus_Darmor_BZH_scaffold_287p00030 Brassica napus HOM05D000388 ORTHO05D000473 4.3e-39 164.5 101 85.1
C09p40130 Brassica napus HOM05D000388 ORTHO05D009843 4.3e-39 164.5 101 85.1
BolC7t41727H Brassica oleracea HOM05D000388 ORTHO05D000473 4.3e-39 164.5 101 85.1
BolSC29t60455H Brassica oleracea HOM05D000388 ORTHO05D000473 4.3e-39 164.5 101 85.1
BolSC45t60943H Brassica oleracea HOM05D000388 ORTHO05D000473 4.3e-39 164.5 101 85.1
BolSC46t60990H Brassica oleracea HOM05D000388 ORTHO05D000473 4.3e-39 164.5 101 85.1
BraSC140t45581Z Brassica rapa HOM05D000388 ORTHO05D000473 4.3e-39 164.5 101 85.1
BraSC151t45706Z Brassica rapa HOM05D000388 ORTHO05D009843 4.3e-39 164.5 101 85.1
BraSC179t45796Z Brassica rapa HOM05D000388 ORTHO05D000473 4.3e-39 164.5 101 85.1
PGR111G0009 Punica granatum HOM05D000388 ORTHO05D009843 4.3e-39 164.5 101 84.2
CARHR281990 Cardamine hirsuta HOM05D000388 ORTHO05D009843 7.4e-39 163.7 101 84.2
AL2G20790 Arabidopsis lyrata HOM05D000388 ORTHO05D009843 2.1e-38 162.2 101 84.2
ATCG00330 Arabidopsis thaliana HOM05D000388 ORTHO05D009843 2.1e-38 162.2 101 84.2
Potri.013G142336 Populus trichocarpa HOM05D000388 ORTHO05D009843 2.1e-38 162.2 101 83.2
Solyc00g500055.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 2.1e-38 162.2 99 84.8
Solyc00g500137.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 2.1e-38 162.2 99 84.8
Solyc00g500207.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 2.1e-38 162.2 99 84.8
Gohir.A05G086166 Gossypium hirsutum HOM05D000388 ORTHO05D009843 6.3e-38 160.6 101 83.2
arahy.Tifrunner.gnm1.ann1.6B1C4L Arachis hypogaea HOM05D000388 ORTHO05D009843 8.2e-38 160.2 98 84.7
Thhalv10011029m.g Eutrema salsugineum HOM05D000388 ORTHO05D009843 8.2e-38 160.2 101 84.2
TWI15G0535 Tripterygium wilfordii HOM05D000388 ORTHO05D009843 3.1e-37 158.3 101 79.2
DCAR_032482 Daucus carota HOM05D000388 ORTHO05D009843 1.5e-36 156.0 101 80.2
CAN.G679.7 Capsicum annuum HOM05D000388 ORTHO05D009843 3.4e-36 154.8 101 80.2
AL2G21360 Arabidopsis lyrata HOM05D000388 ORTHO05D009843 7.6e-36 153.7 99 81.8
EL10Ac1g02280 Beta vulgaris HOM05D000388 ORTHO05D009843 7.6e-36 153.7 101 81.2
A06p23300 Brassica napus HOM05D000388 ORTHO05D000473 2.9e-35 151.8 97 81.4
Gohir.D09G055500 Gossypium hirsutum HOM05D000388 ORTHO05D009843 6.5e-35 150.6 101 77.2
Gohir.A01G140300 Gossypium hirsutum HOM05D000388 ORTHO05D009843 9.3e-34 146.7 101 76.2
Sed0021792 Sechium edule HOM05D000388 ORTHO05D009843 1.2e-33 146.4 101 77.2
CiPaw.10G111400 Carya illinoinensis HOM05D000388 ORTHO05D009843 2.1e-33 145.6 88 84.1
BolC9t56909H Brassica oleracea HOM05D000388 ORTHO05D009843 2.7e-33 145.2 94 81.9
TAR629G1277 Trochodendron aralioides HOM05D000388 ORTHO05D009843 2.7e-33 145.2 86 87.2
Gohir.A01G164720 Gossypium hirsutum HOM05D000388 ORTHO05D009843 7.9e-33 143.7 100 78.0
LjContig00489g0027265 Lotus japonicus HOM05D000388 ORTHO05D009843 3.9e-32 141.4 101 73.3
Oeu062844.1 Olea europaea HOM05D000388 ORTHO05D009843 6.7e-32 140.6 99 74.7
Nitab4.5_0025922g0010 Nicotiana tabacum HOM05D000388 ORTHO05D009843 4.3e-31 137.9 86 83.7
SEGI_01256 Sequoiadendron giganteum HOM05D000388 ORTHO05D009843 7.4e-31 137.1 101 70.3
Nitab4.5_0007186g0040 Nicotiana tabacum HOM05D000388 ORTHO05D009843 6.3e-30 134.0 86 81.4
Oeu017222.1 Olea europaea HOM05D000388 ORTHO05D009843 6.3e-30 134.0 101 72.3
arahy.Tifrunner.gnm1.ann1.FC7Y3W Arachis hypogaea HOM05D000388 ORTHO05D009843 5.9e-28 127.5 73 84.9
Eucgr.C02020 Eucalyptus grandis HOM05D000388 ORTHO05D009843 5.9e-28 127.5 93 74.2
CSS0013534 Camellia sinensis var. sinensis HOM05D000388 ORTHO05D009843 1.7e-27 125.9 79 82.3
CAN.G386.18 Capsicum annuum HOM05D000388 ORTHO05D000473 2.9e-27 125.2 75 81.3
BolSC44t60854H Brassica oleracea HOM05D000388 ORTHO05D009843 1.6e-25 119.4 94 68.1
SMO086G0040 Selaginella moellendorffii HOM05D000388 ORTHO05D009843 2.1e-25 119.0 99 60.6
Hund28396 Selenicereus undatus HOM05D000388 ORTHO05D009843 4.6e-25 117.9 74 81.1
Peaxi162Scf00455g00046 Petunia axillaris HOM05D000388 ORTHO05D009843 7.9e-25 117.1 76 80.3
Peaxi162Scf00575g00006 Petunia axillaris HOM05D000388 ORTHO05D009843 7.9e-25 117.1 70 81.4
Gohir.A07G155821 Gossypium hirsutum HOM05D000388 ORTHO05D009843 9.7e-23 110.2 72 80.6
HanXRQChr00c0345g0573851 Helianthus annuus HOM05D000388 ORTHO05D009843 1.5e-20 102.8 56 87.5
EL10As15g24141 Beta vulgaris HOM05D000388 ORTHO05D009843 1.0e-19 100.1 64 82.8
Medtr5g063380 Medicago truncatula HOM05D000388 ORTHO05D009843 6.5e-19 97.4 53 88.7
Medtr8g079770 Medicago truncatula HOM05D000388 ORTHO05D009843 5.5e-18 94.4 51 100.0
EL10As28g24250 Beta vulgaris HOM05D000388 ORTHO05D000473 4.7e-17 91.3 58 77.6
Phvul.010G068900 Phaseolus vulgaris HOM05D000388 ORTHO05D009843 5.1e-16 87.8 50 84.0
HanXRQChr16g0506261 Helianthus annuus HOM05D000388 ORTHO05D009843 2.0e-15 85.9 57 78.9
Nitab4.5_0002607g0050 Nicotiana tabacum HOM05D000388 ORTHO05D009843 2.6e-15 85.5 62 75.8
CsaV3_6G032160 Cucumis sativus L. HOM05D000388 ORTHO05D009843 3.7e-14 81.6 91 58.2
arahy.Tifrunner.gnm1.ann1.90KAHV Arachis hypogaea HOM05D000388 ORTHO05D009843 6.5e-11 70.9 96 49.0
EL10Ac3g05283 Beta vulgaris HOM05D007099 ORTHO05D009081 1.1e-10 70.1 92 48.9
arahy.Tifrunner.gnm1.ann1.A3NG1I Arachis hypogaea HOM05D000388 ORTHO05D009843 5.5e-10 67.8 94 50.0
ClCG08G008070 Citrullus lanatus HOM05D007099 ORTHO05D009081 1.2e-09 66.6 91 46.2
CsaV3_2G032930 Cucumis sativus L. HOM05D007099 ORTHO05D009081 1.2e-09 66.6 91 45.1
Sed0026927 Sechium edule HOM05D007099 ORTHO05D009081 1.6e-09 66.2 91 45.1
Hund03588 Selenicereus undatus HOM05D007099 ORTHO05D009081 1.6e-09 66.2 92 44.6
Hund07474 Selenicereus undatus HOM05D007099 ORTHO05D009081 1.6e-09 66.2 92 44.6
Atru.chr1.3070 Acer truncatum HOM05D007099 ORTHO05D009081 2.1e-09 65.9 104 41.3
Atru.chr3.1047 Acer truncatum HOM05D007099 ORTHO05D009081 2.1e-09 65.9 104 41.3
Manes.15G073400 Manihot esculenta HOM05D007099 ORTHO05D009081 2.1e-09 65.9 87 42.5
Sopen10g013070 Solanum pennellii HOM05D000388 ORTHO05D009843 2.1e-09 65.9 33 87.9
Solyc04g079380.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 2.7e-09 65.5 94 43.6
Sopen04g032990 Solanum pennellii HOM05D007099 ORTHO05D009081 2.7e-09 65.5 94 43.6
PGSC0003DMG400007997 Solanum tuberosum HOM05D007099 ORTHO05D009081 2.7e-09 65.5 94 43.6
MELO3C019879.2 Cucumis melo HOM05D007099 ORTHO05D009081 3.6e-09 65.1 91 44.0
FvH4_7g06080 Fragaria vesca HOM05D007099 ORTHO05D009081 3.6e-09 65.1 95 43.2
AUR62006089 Chenopodium quinoa HOM05D007099 ORTHO05D009081 4.7e-09 64.7 91 45.1
AUR62019404 Chenopodium quinoa HOM05D007099 ORTHO05D009081 4.7e-09 64.7 91 45.1
Hund29903 Selenicereus undatus HOM05D000388 ORTHO05D009843 4.7e-09 64.7 51 72.5
Aqoxy12s037 Aquilegia oxysepala HOM05D007099 ORTHO05D009081 8.0e-09 63.9 95 46.3
Ciclev10022860m.g Citrus clementina HOM05D007099 ORTHO05D009081 8.0e-09 63.9 95 41.1
FAN06G3861 Fragaria x ananassa HOM05D007099 ORTHO05D009081 8.0e-09 63.9 94 42.6
FAN10G1031 Fragaria x ananassa HOM05D007099 ORTHO05D009081 8.0e-09 63.9 94 42.6
RcHm_v2.0_Chr5g0056441 Rosa chinensis HOM05D007099 ORTHO05D009081 1.0e-08 63.5 95 42.1
CAN.G371.64 Capsicum annuum HOM05D007099 ORTHO05D009081 1.4e-08 63.2 94 41.5
MD07G1070600 Malus domestica HOM05D007099 ORTHO05D009081 1.4e-08 63.2 95 43.2
MD07G1069700 Malus domestica HOM05D007099 ORTHO05D009081 1.8e-08 62.8 94 42.6
Mapoly0991s0001 Marchantia polymorpha HOM05D007099 ORTHO05D009081 1.8e-08 62.8 62 48.4
VMungo0647G1684 Vigna mungo HOM05D007099 ORTHO05D009081 1.8e-08 62.8 95 43.2
Lj2P1221T100 Lonicera japonica HOM05D007099 ORTHO05D009081 2.3e-08 62.4 95 44.2
Prupe.2G087000 Prunus persica HOM05D007099 ORTHO05D009081 2.3e-08 62.4 95 43.2
Prupe.2G087700 Prunus persica HOM05D007099 ORTHO05D009081 2.3e-08 62.4 95 43.2
Prupe.8G094900 Prunus persica HOM05D007099 ORTHO05D009081 2.3e-08 62.4 95 43.2
RcHm_v2.0_Chr1g0333591 Rosa chinensis HOM05D007099 ORTHO05D009081 2.3e-08 62.4 95 41.1
Cfa011223 Carpinus fangiana HOM05D007099 ORTHO05D009081 3.0e-08 62.0 93 39.8
Cfa011224 Carpinus fangiana HOM05D007099 ORTHO05D009081 3.0e-08 62.0 93 39.8
Haze_02608 Corylus avellana HOM05D007099 ORTHO05D009081 3.0e-08 62.0 93 39.8
Nitab4.5_0000068g0330 Nicotiana tabacum HOM05D007099 ORTHO05D009081 3.0e-08 62.0 93 40.9
Nitab4.5_0012613g0010 Nicotiana tabacum HOM05D007099 ORTHO05D009081 3.0e-08 62.0 93 40.9
CiPaw.13G036200 Carya illinoinensis HOM05D007099 ORTHO05D009081 4.0e-08 61.6 93 39.8
FAN16G1526 Fragaria x ananassa HOM05D007099 ORTHO05D009081 4.0e-08 61.6 94 40.4
Lalb_Chr00c21g0405211 Lupinus albus HOM05D007099 ORTHO05D009081 4.0e-08 61.6 95 43.2
Lalb_Chr00c21g0405401 Lupinus albus HOM05D007099 ORTHO05D009081 4.0e-08 61.6 95 43.2
Lalb_Chr00c24g0407161 Lupinus albus HOM05D007099 ORTHO05D009081 4.0e-08 61.6 95 43.2
MD03G1252400 Malus domestica HOM05D007099 ORTHO05D009081 4.0e-08 61.6 95 42.1
Potri.001G424950 Populus trichocarpa HOM05D007099 ORTHO05D009081 4.0e-08 61.6 94 40.4
Sabra16G0287600 Salix brachista HOM05D007099 ORTHO05D009081 4.0e-08 61.6 94 40.4
Zm00001eb261270 Zea mays HOM05D002252 ORTHO05D002451 4.0e-08 61.6 95 41.1
Ah.07g205590 Amaranthus hybridus HOM05D007099 ORTHO05D009081 5.2e-08 61.2 90 43.3
CANSAT56G2898 Cannabis sativa HOM05D007099 ORTHO05D009081 6.7e-08 60.8 95 42.1
ECA234G1703 Erigeron canadensis HOM05D007099 ORTHO05D009081 6.7e-08 60.8 94 41.5
SalBow8G2603 Salvia bowleyana HOM05D007099 ORTHO05D009081 6.7e-08 60.8 94 39.4
TPR.G27292 Trifolium pratense HOM05D007099 ORTHO05D009081 6.7e-08 60.8 88 44.3
HanXRQChr10g0308131 Helianthus annuus HOM05D007099 ORTHO05D009081 8.8e-08 60.5 95 41.1
SHI18971 Sapria himalayana HOM05D007099 ORTHO05D009081 1.5e-07 59.7 95 40.0
Nn1g10177 Nelumbo nucifera HOM05D007099 ORTHO05D009081 2.0e-07 59.3 56 51.8
Cc11_g04750 Coffea canephora HOM05D007099 ORTHO05D009081 2.6e-07 58.9 102 36.3
PSO541G4216 Papaver somniferum HOM05D007099 ORTHO05D009081 2.6e-07 58.9 95 41.1
PSO541G5582 Papaver somniferum HOM05D007099 ORTHO05D009081 2.6e-07 58.9 96 39.6
PSO675G8234 Papaver somniferum HOM05D007099 ORTHO05D009081 3.3e-07 58.5 95 41.1
QL04p041158 Quercus lobata HOM05D007099 ORTHO05D009081 4.4e-07 58.2 92 38.0
QL10p027581 Quercus lobata HOM05D007099 ORTHO05D009081 4.4e-07 58.2 92 38.0
Lsat_1_v5_gn_9_15021 Lactuca sativa HOM05D007099 ORTHO05D009081 5.7e-07 57.8 95 41.1
Lalb_Chr11g0070131 Lupinus albus HOM05D007099 ORTHO05D009081 7.5e-07 57.4 60 46.7
Lalb_Chr11g0070211 Lupinus albus HOM05D007099 ORTHO05D009081 7.5e-07 57.4 60 46.7
Glyma.05G091932 Glycine max HOM05D007099 ORTHO05D009081 9.7e-07 57.0 95 41.1
Cre17.g726300 Chlamydomonas reinhardtii HOM05D007099 ORTHO05D009081 1.3e-06 56.6 104 34.6
THA.LOC104825605 Tarenaya hassleriana HOM05D007099 ORTHO05D009081 1.7e-06 56.2 95 42.1
BolC9t56932H Brassica oleracea HOM05D000388 ORTHO05D009843 2.8e-06 55.5 27 92.6
Peaxi162Scf01092g00115 Petunia axillaris HOM05D007099 ORTHO05D009081 3.7e-06 55.1 85 42.4
SMO134G0293 Selaginella moellendorffii HOM05D007099 ORTHO05D009081 6.3e-06 54.3 98 36.7


User provided reference genes

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