Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr3g030950 Medicago truncatula HOM05D006111 ORTHO05D007683 7.6e-118 427.2 213 100.0
Medtr3g030975 Medicago truncatula HOM05D006111 ORTHO05D007683 7.6e-118 427.2 213 100.0
Ca_14461_v3 Cicer arietinum L. HOM05D006111 ORTHO05D007683 2.5e-113 412.1 213 95.8
Psat5g208360 Pisum sativum HOM05D006111 ORTHO05D007683 1.6e-107 392.9 213 91.5
Psat3g069160 Pisum sativum HOM05D006111 ORTHO05D007683 3.5e-107 391.7 213 91.1
Atru.chr11.2607 Acer truncatum HOM05D006111 ORTHO05D007683 1.5e-97 359.8 213 81.2
Hund21484 Selenicereus undatus HOM05D006111 ORTHO05D007683 1.5e-97 359.8 213 80.8
Manes.10G140800 Manihot esculenta HOM05D006111 ORTHO05D007683 1.9e-97 359.4 213 81.7
Gorai.004G171600 Gossypium raimondii HOM05D006111 ORTHO05D007683 2.5e-97 359.0 213 79.8
Duzib268G0420 Durio zibethinus HOM05D006111 ORTHO05D007683 3.3e-97 358.6 213 80.8
Gohir.D08G164600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 4.3e-97 358.2 213 79.3
arahy.Tifrunner.gnm1.ann1.M31XXH Arachis hypogaea HOM05D006111 ORTHO05D007683 5.6e-97 357.8 213 81.2
arahy.Tifrunner.gnm1.ann1.YZE6TL Arachis hypogaea HOM05D006111 ORTHO05D007683 5.6e-97 357.8 213 81.2
Dinv43431 Davidia involucrata HOM05D006111 ORTHO05D007683 2.1e-96 355.9 213 80.3
Ciclev10031806m.g Citrus clementina HOM05D006111 ORTHO05D007683 1.8e-95 352.8 213 78.9
EL10Ac2g04342 Beta vulgaris HOM05D006111 ORTHO05D007683 2.4e-95 352.4 213 77.5
SalBow6G4116 Salvia bowleyana HOM05D006111 ORTHO05D007683 4.0e-95 351.7 213 77.5
Thecc.01G409400 Theobroma cacao HOM05D006111 ORTHO05D007683 5.3e-95 351.3 213 78.4
PGR044G0412 Punica granatum HOM05D006111 ORTHO05D007683 6.9e-95 350.9 213 77.0
GSVIVG01032129001 Vitis vinifera HOM05D006111 ORTHO05D007683 6.9e-95 350.9 213 78.4
CiPaw.13G006200 Carya illinoinensis HOM05D006111 ORTHO05D007683 9.0e-95 350.5 213 79.3
Migut.N01606 Erythranthe guttata HOM05D006111 ORTHO05D007683 9.0e-95 350.5 213 77.0
Thhalv10020943m.g Eutrema salsugineum HOM05D006111 ORTHO05D007683 9.0e-95 350.5 213 78.4
Eucgr.J01211 Eucalyptus grandis HOM05D006111 ORTHO05D007683 1.2e-94 350.1 213 78.4
SalBow6G6970 Salvia bowleyana HOM05D006111 ORTHO05D007683 1.2e-94 350.1 213 77.0
QL04p008312 Quercus lobata HOM05D006111 ORTHO05D007683 2.0e-94 349.4 212 78.3
Sp3g06920 Schrenkiella parvula HOM05D006111 ORTHO05D007683 2.0e-94 349.4 213 77.9
CARHR082760 Cardamine hirsuta HOM05D006111 ORTHO05D007683 2.6e-94 349.0 213 77.9
THA.LOC104819080 Tarenaya hassleriana HOM05D006111 ORTHO05D007683 2.6e-94 349.0 213 78.4
Cfa010790 Carpinus fangiana HOM05D006111 ORTHO05D007683 4.5e-94 348.2 213 78.4
Carub.0003s0759 Capsella rubella HOM05D006111 ORTHO05D007683 5.8e-94 347.8 213 77.9
CsaV3_7G030960 Cucumis sativus L. HOM05D006111 ORTHO05D007683 9.9e-94 347.1 213 77.9
AL3G19390 Arabidopsis lyrata HOM05D006111 ORTHO05D007683 1.3e-93 346.7 213 77.5
Aqoxy1G00288 Aquilegia oxysepala HOM05D006111 ORTHO05D007683 1.7e-93 346.3 213 77.9
Lj3g0026579 Lotus japonicus HOM05D006111 ORTHO05D007683 1.7e-93 346.3 213 77.9
TWI09G1338 Tripterygium wilfordii HOM05D006111 ORTHO05D007683 1.7e-93 346.3 213 78.9
Sc10g0000130 Simmondsia chinensis HOM05D006111 ORTHO05D007683 2.9e-93 345.5 213 78.4
Oeu014586.1 Olea europaea HOM05D006111 ORTHO05D007683 3.8e-93 345.1 213 77.9
Potri.009G059600 Populus trichocarpa HOM05D006111 ORTHO05D007683 3.8e-93 345.1 213 77.0
AT3G08010 Arabidopsis thaliana HOM05D006111 ORTHO05D007683 4.9e-93 344.7 213 76.5
BcaB03g11554 Brassica carinata HOM05D006111 ORTHO05D007683 4.9e-93 344.7 213 77.0
COL.COLO4_04864 Corchorus olitorius HOM05D006111 ORTHO05D007683 4.9e-93 344.7 213 77.0
CSS0012829 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 6.4e-93 344.4 213 77.9
CSS0034733 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 6.4e-93 344.4 213 77.9
ClCG09G004060 Citrullus lanatus HOM05D006111 ORTHO05D007683 6.4e-93 344.4 213 77.5
Lalb_Chr01g0015831 Lupinus albus HOM05D006111 ORTHO05D007683 6.4e-93 344.4 213 78.4
MBI02_g05669_MAGBIO Magnolia biondii HOM05D006111 ORTHO05D007683 6.4e-93 344.4 213 76.5
Aa31LG5G18560 Aethionema arabicum HOM05D006111 ORTHO05D007683 8.4e-93 344.0 213 76.1
A03p35610 Brassica napus HOM05D006111 ORTHO05D007683 1.1e-92 343.6 213 76.5
C03p43240 Brassica napus HOM05D006111 ORTHO05D007683 1.1e-92 343.6 213 76.5
BolC3t16593H Brassica oleracea HOM05D006111 ORTHO05D007683 1.1e-92 343.6 213 76.5
BraA03t12736Z Brassica rapa HOM05D006111 ORTHO05D007683 1.1e-92 343.6 213 76.5
CANSAT80G0546 Cannabis sativa HOM05D006111 ORTHO05D007683 1.1e-92 343.6 213 76.5
HanXRQChr09g0260521 Helianthus annuus HOM05D006111 ORTHO05D007683 1.4e-92 343.2 213 77.0
Potri.009G059800 Populus trichocarpa HOM05D006111 ORTHO05D007683 1.4e-92 343.2 213 76.5
Nn7g36241 Nelumbo nucifera HOM05D006111 ORTHO05D007683 1.9e-92 342.8 213 77.0
RcHm_v2.0_Chr1g0316521 Rosa chinensis HOM05D006111 ORTHO05D007683 1.9e-92 342.8 213 77.5
TAR623G0061 Trochodendron aralioides HOM05D006111 ORTHO05D007683 1.9e-92 342.8 213 77.0
Cc01_g06700 Coffea canephora HOM05D006111 ORTHO05D007683 2.4e-92 342.4 213 75.1
Ah.10g038770 Amaranthus hybridus HOM05D006111 ORTHO05D007683 3.2e-92 342.0 213 76.5
Lsat_1_v5_gn_4_136121 Lactuca sativa HOM05D006111 ORTHO05D007683 3.2e-92 342.0 213 77.0
Sed0027336 Sechium edule HOM05D006111 ORTHO05D007683 4.2e-92 341.7 213 77.5
MSTRG.17026 Avicennia marina HOM05D006111 ORTHO05D007683 9.3e-92 340.5 213 75.6
FvH4_7g01190 Fragaria vesca HOM05D006111 ORTHO05D007683 1.2e-91 340.1 213 77.0
FAN01G0043 Fragaria x ananassa HOM05D006111 ORTHO05D007683 1.2e-91 340.1 213 77.0
FAN03G2464 Fragaria x ananassa HOM05D006111 ORTHO05D007683 1.2e-91 340.1 213 77.0
FAN06G2641 Fragaria x ananassa HOM05D006111 ORTHO05D007683 1.2e-91 340.1 213 77.0
FAN10G2658 Fragaria x ananassa HOM05D006111 ORTHO05D007683 1.2e-91 340.1 213 77.0
CAN.G666.14 Capsicum annuum HOM05D006111 ORTHO05D007683 2.7e-91 339.0 213 76.1
Sopen02g001570 Solanum pennellii HOM05D006111 ORTHO05D007683 3.5e-91 338.6 213 76.1
PGSC0003DMG400006635 Solanum tuberosum HOM05D006111 ORTHO05D007683 3.5e-91 338.6 213 76.1
MD02G1308600 Malus domestica HOM05D006111 ORTHO05D007683 4.6e-91 338.2 213 76.5
Prupe.2G015400 Prunus persica HOM05D006111 ORTHO05D007683 4.6e-91 338.2 213 76.1
PSO339G0604 Papaver somniferum HOM05D006111 ORTHO05D007683 6.0e-91 337.8 213 77.0
Solyc02g005200.4 Solanum lycopersicum HOM05D006111 ORTHO05D007683 1.3e-90 336.7 213 75.6
Peaxi162Scf00818g00127 Petunia axillaris HOM05D006111 ORTHO05D007683 1.8e-90 336.3 223 72.2
MD07G1013000 Malus domestica HOM05D006111 ORTHO05D007683 2.3e-90 335.9 213 76.1
PSO384G4428 Papaver somniferum HOM05D006111 ORTHO05D007683 2.3e-90 335.9 213 77.0
MELO3C023560.2 Cucumis melo HOM05D006111 ORTHO05D007683 3.0e-90 335.5 229 72.5
Os02g0610800 Oryza sativa ssp. japonica HOM05D006111 ORTHO05D007683 3.9e-90 335.1 213 72.8
vmacro21191 Vaccinium macrocarpon HOM05D006111 ORTHO05D007683 2.5e-89 332.4 243 68.3
ATR0332G055 Amborella trichopoda HOM05D006111 ORTHO05D007683 2.8e-88 328.9 213 72.3
DCAR_015173 Daucus carota HOM05D006111 ORTHO05D007683 3.7e-88 328.6 213 72.3
Nitab4.5_0001001g0030 Nicotiana tabacum HOM05D006111 ORTHO05D007683 8.1e-88 327.4 205 75.1
Sabra09G0044000 Salix brachista HOM05D006111 ORTHO05D007683 4.0e-87 325.1 262 62.2
SGA_v2.0_scaffold24G10670 Striga asiatica HOM05D006111 ORTHO05D007683 2.6e-86 322.4 213 72.8
unitig_749.g14328 Utricularia gibba HOM05D006111 ORTHO05D007683 2.6e-86 322.4 213 71.8
Glyma.15G275900 Glycine max HOM05D006111 ORTHO05D007683 4.5e-86 321.6 213 73.7
TPR.G35304 Trifolium pratense HOM05D006111 ORTHO05D007683 3.8e-85 318.5 214 78.0
Rhsim01G0128600 Rhododendron simsii HOM05D006111 ORTHO05D007683 1.9e-84 316.2 271 60.5
Lj5C169G9 Lonicera japonica HOM05D006111 ORTHO05D007683 2.5e-84 315.8 197 75.6
Phvul.005G024500 Phaseolus vulgaris HOM05D006111 ORTHO05D007683 7.1e-84 314.3 213 72.3
Glyma.10G089700 Glycine max HOM05D006111 ORTHO05D007683 1.2e-83 313.5 213 71.8
HPP92_009763 Vanilla planifolia HOM05D006111 ORTHO05D007683 2.1e-83 312.8 213 71.4
Nitab4.5_0000139g0200 Nicotiana tabacum HOM05D006111 ORTHO05D007683 4.6e-83 311.6 213 70.4
Cpa.g.sc125.25 Carica papaya HOM05D006111 ORTHO05D007683 7.9e-83 310.8 192 76.6
VMungo1080G1123 Vigna mungo HOM05D006111 ORTHO05D007683 1.5e-81 306.6 213 70.9
AUR62043480 Chenopodium quinoa HOM05D006111 ORTHO05D007683 1.6e-75 286.6 213 66.7
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 3.5e-75 285.4 185 74.1
Actinidia20661 Actinidia chinensis HOM05D006111 ORTHO05D007683 2.2e-72 276.2 208 68.8
AUR62023076 Chenopodium quinoa HOM05D006111 ORTHO05D007683 3.4e-70 268.9 213 62.4
AUR62009394 Chenopodium quinoa HOM05D006111 ORTHO05D007683 5.9e-70 268.1 213 62.4
CDE05G1285 Ceratophyllum demersum HOM05D006111 ORTHO05D007683 9.4e-68 260.8 187 70.6
HPP92_009753 Vanilla planifolia HOM05D006111 ORTHO05D007683 1.8e-63 246.5 177 68.4
Mapoly0153s0005 Marchantia polymorpha HOM05D006111 ORTHO05D007683 2.6e-62 242.7 213 56.3
Pp3c5_6760 Physcomitrium patens HOM05D006111 ORTHO05D007683 1.0e-61 240.7 213 56.8
Pp3c6_22710 Physcomitrium patens HOM05D006111 ORTHO05D007683 1.1e-60 237.3 213 56.8
Prupe.2G016000 Prunus persica HOM05D006111 ORTHO05D007683 2.2e-56 223.0 153 71.9
Actinidia21546 Actinidia chinensis HOM05D006111 ORTHO05D007683 4.8e-56 221.9 213 58.7
AagrBONN_evm.TU.Sc2ySwM_344.1799 Anthoceros agrestis HOM05D006111 ORTHO05D007683 2.6e-54 216.1 213 50.2
QL04p008446 Quercus lobata HOM05D006111 ORTHO05D007683 8.0e-51 204.5 135 72.6
SMO353G0296 Selaginella moellendorffii HOM05D006111 ORTHO05D007683 1.5e-49 200.3 212 47.6
Zm00001eb246820 Zea mays HOM05D006111 ORTHO05D007683 3.1e-47 192.6 126 67.5
Haze_03183 Corylus avellana HOM05D006111 ORTHO05D007683 1.2e-46 190.7 177 58.2
PRCOL_00003534 Prasinoderma coloniale HOM05D006111 ORTHO05D007683 3.0e-42 176.0 213 40.4
Cre17.g702500 Chlamydomonas reinhardtii HOM05D006111 ORTHO05D007683 3.4e-41 172.6 214 42.1
MCO10G268 Micromonas commoda HOM05D006111 ORTHO05D007683 2.4e-39 166.4 207 43.0
CBR_g5582 Chara braunii HOM05D006111 ORTHO05D007683 1.6e-35 153.7 161 48.4
Gohir.A08G143600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 1.5e-33 147.1 80 80.0
HanXRQChr12g0362881 Helianthus annuus HOM05D006111 ORTHO05D007683 5.0e-29 132.1 137 51.1
SEGI_00353 Sequoiadendron giganteum HOM05D006111 ORTHO05D007683 4.9e-24 115.5 87 64.4
C03p43260 Brassica napus HOM05D006111 ORTHO05D007683 2.2e-16 90.1 47 83.0
BolC3t16595H Brassica oleracea HOM05D006111 ORTHO05D007683 2.2e-16 90.1 47 83.0
Medtr5g055880 Medicago truncatula HOM05D007086 ORTHO05D008927 7.1e-07 58.5 43 62.8


User provided reference genes

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