Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr3g030950 Medicago truncatula HOM05D006111 ORTHO05D007683 2.9e-205 718.4 381 100.0
Ca_14461_v3 Cicer arietinum L. HOM05D006111 ORTHO05D007683 9.8e-185 650.2 382 86.6
Psat5g208360 Pisum sativum HOM05D006111 ORTHO05D007683 4.3e-172 608.2 392 83.4
Psat3g069160 Pisum sativum HOM05D006111 ORTHO05D007683 5.3e-154 548.1 296 90.9
Lj3g0026579 Lotus japonicus HOM05D006111 ORTHO05D007683 2.4e-151 539.3 386 73.1
Duzib268G0420 Durio zibethinus HOM05D006111 ORTHO05D007683 7.8e-150 534.3 381 69.8
arahy.Tifrunner.gnm1.ann1.M31XXH Arachis hypogaea HOM05D006111 ORTHO05D007683 5.6e-148 528.1 387 74.4
arahy.Tifrunner.gnm1.ann1.YZE6TL Arachis hypogaea HOM05D006111 ORTHO05D007683 5.6e-148 528.1 387 74.4
Dinv43431 Davidia involucrata HOM05D006111 ORTHO05D007683 2.8e-147 525.8 391 68.3
Atru.chr11.2607 Acer truncatum HOM05D006111 ORTHO05D007683 3.6e-147 525.4 385 70.1
Gorai.004G171600 Gossypium raimondii HOM05D006111 ORTHO05D007683 4.8e-147 525.0 382 68.1
QL04p008312 Quercus lobata HOM05D006111 ORTHO05D007683 4.8e-147 525.0 387 70.8
Gohir.D08G164600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 1.8e-146 523.1 382 67.8
SalBow6G4116 Salvia bowleyana HOM05D006111 ORTHO05D007683 3.1e-146 522.3 383 68.1
SalBow6G6970 Salvia bowleyana HOM05D006111 ORTHO05D007683 9.0e-146 520.8 383 67.9
Migut.N01606 Erythranthe guttata HOM05D006111 ORTHO05D007683 1.2e-145 520.4 381 67.2
Manes.10G140800 Manihot esculenta HOM05D006111 ORTHO05D007683 1.5e-145 520.0 387 70.0
Thecc.01G409400 Theobroma cacao HOM05D006111 ORTHO05D007683 2.6e-145 519.2 383 67.9
Oeu014586.1 Olea europaea HOM05D006111 ORTHO05D007683 3.4e-145 518.8 387 68.0
Aqoxy1G00288 Aquilegia oxysepala HOM05D006111 ORTHO05D007683 1.1e-143 513.8 393 66.4
EL10Ac2g04342 Beta vulgaris HOM05D006111 ORTHO05D007683 1.1e-143 513.8 396 66.2
Eucgr.J01211 Eucalyptus grandis HOM05D006111 ORTHO05D007683 1.1e-143 513.8 387 66.9
Potri.009G059600 Populus trichocarpa HOM05D006111 ORTHO05D007683 1.1e-143 513.8 384 68.0
RcHm_v2.0_Chr1g0316521 Rosa chinensis HOM05D006111 ORTHO05D007683 1.4e-143 513.5 386 68.7
AL3G19390 Arabidopsis lyrata HOM05D006111 ORTHO05D007683 4.2e-143 511.9 389 67.1
Lalb_Chr01g0015831 Lupinus albus HOM05D006111 ORTHO05D007683 4.2e-143 511.9 387 68.5
Ciclev10031806m.g Citrus clementina HOM05D006111 ORTHO05D007683 5.4e-143 511.5 379 68.1
FvH4_7g01190 Fragaria vesca HOM05D006111 ORTHO05D007683 7.1e-143 511.1 384 68.0
FAN06G2641 Fragaria x ananassa HOM05D006111 ORTHO05D007683 7.1e-143 511.1 384 68.0
Potri.009G059800 Populus trichocarpa HOM05D006111 ORTHO05D007683 7.1e-143 511.1 383 67.6
THA.LOC104819080 Tarenaya hassleriana HOM05D006111 ORTHO05D007683 7.1e-143 511.1 387 67.2
CARHR082760 Cardamine hirsuta HOM05D006111 ORTHO05D007683 9.3e-143 510.8 381 67.7
TWI09G1338 Tripterygium wilfordii HOM05D006111 ORTHO05D007683 9.3e-143 510.8 385 67.3
Carub.0003s0759 Capsella rubella HOM05D006111 ORTHO05D007683 1.2e-142 510.4 389 67.1
PGR044G0412 Punica granatum HOM05D006111 ORTHO05D007683 1.6e-142 510.0 389 66.1
Hund21484 Selenicereus undatus HOM05D006111 ORTHO05D007683 1.6e-142 510.0 395 66.3
CSS0012829 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 2.7e-142 509.2 386 67.4
CSS0034733 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 2.7e-142 509.2 386 67.4
Nn7g36241 Nelumbo nucifera HOM05D006111 ORTHO05D007683 2.7e-142 509.2 390 67.2
CiPaw.13G006200 Carya illinoinensis HOM05D006111 ORTHO05D007683 3.5e-142 508.8 382 68.1
Thhalv10020943m.g Eutrema salsugineum HOM05D006111 ORTHO05D007683 3.5e-142 508.8 387 68.0
Sp3g06920 Schrenkiella parvula HOM05D006111 ORTHO05D007683 6.0e-142 508.1 388 66.8
AT3G08010 Arabidopsis thaliana HOM05D006111 ORTHO05D007683 7.9e-142 507.7 389 66.3
TAR623G0061 Trochodendron aralioides HOM05D006111 ORTHO05D007683 1.3e-141 506.9 389 66.1
PSO339G0604 Papaver somniferum HOM05D006111 ORTHO05D007683 1.8e-141 506.5 390 66.4
C03p43240 Brassica napus HOM05D006111 ORTHO05D007683 2.3e-141 506.1 388 67.3
MD02G1308600 Malus domestica HOM05D006111 ORTHO05D007683 2.3e-141 506.1 383 66.8
FAN10G2658 Fragaria x ananassa HOM05D006111 ORTHO05D007683 3.0e-141 505.8 384 67.2
Ah.10g038770 Amaranthus hybridus HOM05D006111 ORTHO05D007683 3.9e-141 505.4 395 66.1
FAN03G2464 Fragaria x ananassa HOM05D006111 ORTHO05D007683 5.1e-141 505.0 384 67.2
PSO384G4428 Papaver somniferum HOM05D006111 ORTHO05D007683 6.7e-141 504.6 390 66.4
Sc10g0000130 Simmondsia chinensis HOM05D006111 ORTHO05D007683 6.7e-141 504.6 390 66.2
FAN01G0043 Fragaria x ananassa HOM05D006111 ORTHO05D007683 8.7e-141 504.2 384 67.2
HanXRQChr09g0260521 Helianthus annuus HOM05D006111 ORTHO05D007683 1.1e-140 503.8 384 66.7
CAN.G666.14 Capsicum annuum HOM05D006111 ORTHO05D007683 1.9e-140 503.1 385 67.0
Peaxi162Scf00818g00127 Petunia axillaris HOM05D006111 ORTHO05D007683 1.9e-140 503.1 401 64.8
CsaV3_7G030960 Cucumis sativus L. HOM05D006111 ORTHO05D007683 2.5e-140 502.7 386 66.1
MD07G1013000 Malus domestica HOM05D006111 ORTHO05D007683 5.6e-140 501.5 384 66.1
CANSAT80G0546 Cannabis sativa HOM05D006111 ORTHO05D007683 9.6e-140 500.7 387 69.8
ClCG09G004060 Citrullus lanatus HOM05D006111 ORTHO05D007683 9.6e-140 500.7 386 66.1
COL.COLO4_04864 Corchorus olitorius HOM05D006111 ORTHO05D007683 2.1e-139 499.6 387 68.2
DCAR_015173 Daucus carota HOM05D006111 ORTHO05D007683 2.1e-139 499.6 383 65.5
Lsat_1_v5_gn_4_136121 Lactuca sativa HOM05D006111 ORTHO05D007683 2.8e-139 499.2 381 68.0
Prupe.2G015400 Prunus persica HOM05D006111 ORTHO05D007683 6.2e-139 498.0 387 66.1
MSTRG.17026 Avicennia marina HOM05D006111 ORTHO05D007683 5.3e-138 495.0 389 65.3
Cc01_g06700 Coffea canephora HOM05D006111 ORTHO05D007683 5.3e-138 495.0 305 75.1
MBI02_g05669_MAGBIO Magnolia biondii HOM05D006111 ORTHO05D007683 1.2e-137 493.8 391 64.2
MELO3C023560.2 Cucumis melo HOM05D006111 ORTHO05D007683 1.5e-137 493.4 402 63.9
Phvul.005G024500 Phaseolus vulgaris HOM05D006111 ORTHO05D007683 5.8e-137 491.5 385 65.7
Sed0027336 Sechium edule HOM05D006111 ORTHO05D007683 5.8e-137 491.5 386 65.5
Glyma.15G275900 Glycine max HOM05D006111 ORTHO05D007683 9.9e-137 490.7 385 67.8
GSVIVG01032129001 Vitis vinifera HOM05D006111 ORTHO05D007683 1.3e-136 490.3 297 77.8
Aa31LG5G18560 Aethionema arabicum HOM05D006111 ORTHO05D007683 1.7e-136 490.0 386 64.0
Sopen02g001570 Solanum pennellii HOM05D006111 ORTHO05D007683 2.2e-136 489.6 305 76.1
PGSC0003DMG400006635 Solanum tuberosum HOM05D006111 ORTHO05D007683 8.4e-136 487.6 303 76.6
Nitab4.5_0001001g0030 Nicotiana tabacum HOM05D006111 ORTHO05D007683 1.4e-135 486.9 379 64.9
Solyc02g005200.4 Solanum lycopersicum HOM05D006111 ORTHO05D007683 1.4e-135 486.9 305 75.4
vmacro21191 Vaccinium macrocarpon HOM05D006111 ORTHO05D007683 3.5e-134 482.3 463 57.5
SGA_v2.0_scaffold24G10670 Striga asiatica HOM05D006111 ORTHO05D007683 4.6e-134 481.9 394 63.5
Glyma.10G089700 Glycine max HOM05D006111 ORTHO05D007683 7.9e-134 481.1 385 66.8
VMungo1080G1123 Vigna mungo HOM05D006111 ORTHO05D007683 1.3e-133 480.3 385 64.7
Sabra09G0044000 Salix brachista HOM05D006111 ORTHO05D007683 1.3e-131 473.8 438 58.7
Rhsim01G0128600 Rhododendron simsii HOM05D006111 ORTHO05D007683 5.8e-129 464.9 491 55.6
ATR0332G055 Amborella trichopoda HOM05D006111 ORTHO05D007683 1.0e-128 464.2 304 71.4
Lj5C169G9 Lonicera japonica HOM05D006111 ORTHO05D007683 1.3e-128 463.8 281 77.2
unitig_749.g14328 Utricularia gibba HOM05D006111 ORTHO05D007683 3.8e-128 462.2 304 70.4
Cfa010790 Carpinus fangiana HOM05D006111 ORTHO05D007683 6.7e-125 451.4 387 61.5
Os02g0610800 Oryza sativa ssp. japonica HOM05D006111 ORTHO05D007683 2.2e-123 446.4 304 67.8
AUR62043480 Chenopodium quinoa HOM05D006111 ORTHO05D007683 8.2e-123 444.5 397 58.9
Nitab4.5_0000139g0200 Nicotiana tabacum HOM05D006111 ORTHO05D007683 1.1e-122 444.1 381 60.9
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 1.4e-122 443.7 277 75.5
HPP92_009763 Vanilla planifolia HOM05D006111 ORTHO05D007683 1.0e-120 437.6 305 69.8
Cpa.g.sc125.25 Carica papaya HOM05D006111 ORTHO05D007683 1.3e-120 437.2 425 56.0
AUR62009394 Chenopodium quinoa HOM05D006111 ORTHO05D007683 7.2e-119 431.4 397 57.2
Medtr3g030975 Medicago truncatula HOM05D006111 ORTHO05D007683 1.4e-117 427.2 213 100.0
AUR62023076 Chenopodium quinoa HOM05D006111 ORTHO05D007683 2.3e-117 426.4 397 56.7
CDE05G1285 Ceratophyllum demersum HOM05D006111 ORTHO05D007683 5.0e-112 408.7 366 59.8
Actinidia21546 Actinidia chinensis HOM05D006111 ORTHO05D007683 2.7e-102 376.3 391 54.2
BcaB03g11554 Brassica carinata HOM05D006111 ORTHO05D007683 7.0e-98 361.7 223 77.1
Pp3c5_6760 Physcomitrium patens HOM05D006111 ORTHO05D007683 9.1e-98 361.3 293 60.1
Haze_03183 Corylus avellana HOM05D006111 ORTHO05D007683 1.6e-97 360.5 346 57.8
Pp3c6_22710 Physcomitrium patens HOM05D006111 ORTHO05D007683 1.7e-96 357.1 296 59.8
Mapoly0153s0005 Marchantia polymorpha HOM05D006111 ORTHO05D007683 1.2e-94 350.9 293 57.7
TPR.G35304 Trifolium pratense HOM05D006111 ORTHO05D007683 3.6e-94 349.4 230 78.7
A03p35610 Brassica napus HOM05D006111 ORTHO05D007683 2.0e-92 343.6 213 76.5
BolC3t16593H Brassica oleracea HOM05D006111 ORTHO05D007683 2.0e-92 343.6 213 76.5
BraA03t12736Z Brassica rapa HOM05D006111 ORTHO05D007683 2.0e-92 343.6 213 76.5
Zm00001eb246820 Zea mays HOM05D006111 ORTHO05D007683 4.1e-90 335.9 217 67.7
AagrBONN_evm.TU.Sc2ySwM_344.1799 Anthoceros agrestis HOM05D006111 ORTHO05D007683 1.5e-87 327.4 293 53.6
Gohir.A08G143600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 1.3e-83 314.3 249 61.8
SMO353G0296 Selaginella moellendorffii HOM05D006111 ORTHO05D007683 1.5e-79 300.8 291 49.1
Actinidia20661 Actinidia chinensis HOM05D006111 ORTHO05D007683 5.2e-77 292.4 292 55.8
PRCOL_00003534 Prasinoderma coloniale HOM05D006111 ORTHO05D007683 2.0e-68 263.8 304 41.8
Cre17.g702500 Chlamydomonas reinhardtii HOM05D006111 ORTHO05D007683 2.4e-66 256.9 285 44.9
HPP92_009753 Vanilla planifolia HOM05D006111 ORTHO05D007683 3.3e-63 246.5 177 68.4
MCO10G268 Micromonas commoda HOM05D006111 ORTHO05D007683 4.7e-62 242.7 278 44.6
Prupe.2G016000 Prunus persica HOM05D006111 ORTHO05D007683 2.4e-58 230.3 157 72.0
QL04p008446 Quercus lobata HOM05D006111 ORTHO05D007683 1.4e-50 204.5 135 72.6
A03p35600 Brassica napus HOM05D006111 ORTHO05D007683 7.3e-39 165.6 166 55.4
CBR_g5582 Chara braunii HOM05D006111 ORTHO05D007683 2.9e-35 153.7 161 48.4
SEGI_32608 Sequoiadendron giganteum HOM05D006111 ORTHO05D007683 3.8e-35 153.3 108 63.9
CBR_g5588 Chara braunii HOM05D006111 ORTHO05D007683 4.3e-31 139.8 97 66.0
TPR.G36152 Trifolium pratense HOM05D006111 ORTHO05D007683 1.3e-30 138.3 108 69.4
HanXRQChr12g0362881 Helianthus annuus HOM05D006111 ORTHO05D007683 9.0e-29 132.1 137 51.1
Medtr8g104810 Medicago truncatula HOM05D006111 ORTHO05D007683 4.9e-27 126.3 64 90.6
HPP92_009752 Vanilla planifolia HOM05D006111 ORTHO05D007683 6.4e-27 125.9 90 65.6
SEGI_00353 Sequoiadendron giganteum HOM05D006111 ORTHO05D007683 8.7e-24 115.5 87 64.4
C03p43260 Brassica napus HOM05D006111 ORTHO05D007683 3.9e-16 90.1 47 83.0
BolC3t16595H Brassica oleracea HOM05D006111 ORTHO05D007683 3.9e-16 90.1 47 83.0
Medtr5g055880 Medicago truncatula HOM05D007086 ORTHO05D008927 1.3e-06 58.5 43 62.8


User provided reference genes

Program Settings