Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 2.0e-50 202.2 107 100.0
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 2.4e-40 168.7 107 82.2
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 4.1e-40 167.9 108 84.3
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 3.5e-39 164.9 105 81.9
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 1.9e-37 159.1 105 81.0
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 4.3e-37 157.9 105 81.0
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 4.3e-37 157.9 105 81.0
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 1.5e-34 149.4 107 75.7
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 1.2e-31 139.8 108 73.1
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 7.8e-31 137.1 108 69.4
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 1.7e-30 136.0 107 68.2
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 1.5e-29 132.9 109 67.9
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 1.3e-28 129.8 109 72.5
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 2.1e-28 129.0 108 65.7
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 6.2e-28 127.5 108 66.7
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 3.1e-27 125.2 109 67.9
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 4.0e-27 124.8 107 70.1
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 5.3e-27 124.4 106 65.1
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 5.3e-27 124.4 107 67.3
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 8.4e-25 117.1 109 63.3
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 1.9e-24 115.9 104 60.6
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 2.4e-24 115.5 111 59.5
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 9.3e-24 113.6 110 60.9
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 2.1e-23 112.5 112 58.9
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 2.7e-23 112.1 109 58.7
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 2.7e-23 112.1 109 58.7
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 3.5e-23 111.7 108 60.2
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 4.6e-23 111.3 108 60.2
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 6.0e-23 110.9 108 60.2
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 1.0e-22 110.2 108 59.3
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 1.8e-22 109.4 108 54.6
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 2.3e-22 109.0 108 61.1
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 3.0e-22 108.6 109 64.2
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 3.0e-22 108.6 107 56.1
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 3.9e-22 108.2 105 58.1
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 1.5e-21 106.3 105 58.1
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 3.3e-21 105.1 111 55.9
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 5.6e-21 104.4 110 61.8
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 5.6e-21 104.4 111 58.6
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 1.3e-20 103.2 113 59.3
EL10Ac2g04340 Beta vulgaris HOM05D004268 ORTHO05D004958 2.1e-20 102.4 108 56.5
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 2.1e-20 102.4 109 61.5
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 3.7e-20 101.7 112 57.1
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 3.7e-20 101.7 117 54.7
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 4.8e-20 101.3 104 59.6
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 6.2e-20 100.9 108 55.6
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 8.1e-20 100.5 111 56.8
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 1.1e-19 100.1 109 55.0
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 1.1e-19 100.1 110 55.5
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 1.4e-19 99.8 115 57.4
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 1.4e-19 99.8 107 55.1
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 1.4e-19 99.8 109 58.7
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 3.1e-19 98.6 109 56.0
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 4.0e-19 98.2 107 57.9
Dinv09347 Davidia involucrata HOM05D004268 ORTHO05D004958 5.3e-19 97.8 95 58.9
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 5.3e-19 97.8 108 59.3
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 6.9e-19 97.4 105 50.5
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 9.0e-19 97.1 110 56.4
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 1.2e-18 96.7 109 53.2
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 1.2e-18 96.7 109 54.1
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 1.5e-18 96.3 107 52.3
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 2.0e-18 95.9 112 54.5
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 2.0e-18 95.9 109 55.0
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 2.6e-18 95.5 112 54.5
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 3.4e-18 95.1 107 56.1
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 3.4e-18 95.1 107 52.3
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 4.5e-18 94.7 106 56.6
Ah.10g038780 Amaranthus hybridus HOM05D000040 ORTHO05D000267 7.6e-18 94.0 104 56.7
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 7.6e-18 94.0 107 57.0
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 1.3e-17 93.2 109 55.0
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 1.7e-17 92.8 114 55.3
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 1.7e-17 92.8 114 56.1
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 2.2e-17 92.4 106 52.8
PSO541G0301 Papaver somniferum HOM05D004268 ORTHO05D004958 2.2e-17 92.4 113 50.4
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 3.8e-17 91.7 106 54.7
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 3.8e-17 91.7 106 54.7
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 3.8e-17 91.7 106 54.7
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 6.4e-17 90.9 111 56.8
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 6.4e-17 90.9 108 54.6
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 6.4e-17 90.9 111 56.8
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 6.4e-17 90.9 111 56.8
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 6.4e-17 90.9 107 54.2
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 6.4e-17 90.9 116 51.7
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 8.4e-17 90.5 110 51.8
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 8.4e-17 90.5 105 52.4
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 1.1e-16 90.1 106 54.7
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 1.4e-16 89.7 107 54.2
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 1.9e-16 89.4 108 55.6
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 2.4e-16 89.0 93 52.7
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 3.2e-16 88.6 106 56.6
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 4.2e-16 88.2 106 55.7
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 4.2e-16 88.2 106 53.8
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 7.1e-16 87.4 108 49.1
A05p27660 Brassica napus HOM05D004268 ORTHO05D004958 9.3e-16 87.0 106 51.9
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 9.3e-16 87.0 109 52.3
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 9.3e-16 87.0 113 49.6
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 3.5e-15 85.1 106 53.8
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 3.5e-15 85.1 109 51.4
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 6.0e-15 84.3 111 48.6
CDE05G3212 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 7.9e-15 84.0 106 52.8
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 1.0e-14 83.6 112 50.0
PGR119G0693 Punica granatum HOM05D004268 ORTHO05D004958 1.0e-14 83.6 112 48.2
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 1.3e-14 83.2 110 51.8
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 2.3e-14 82.4 111 51.4
Peaxi162Scf00032g00064 Petunia axillaris HOM05D004268 ORTHO05D004958 2.3e-14 82.4 110 48.2
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 3.0e-14 82.0 112 48.2
Sed0017781 Sechium edule HOM05D004268 ORTHO05D004958 3.0e-14 82.0 110 50.0
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 3.9e-14 81.6 110 49.1
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 5.1e-14 81.3 109 45.9
ECA233G4176 Erigeron canadensis HOM05D004268 ORTHO05D004958 1.1e-13 80.1 113 50.4
BcaC01g03530 Brassica carinata HOM05D004268 ORTHO05D004958 2.5e-13 79.0 107 48.6
BolC3t17427H Brassica oleracea HOM05D004268 ORTHO05D004958 2.5e-13 79.0 107 48.6
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 2.5e-13 79.0 85 51.8
TAR623G0940 Trochodendron aralioides HOM05D004268 ORTHO05D004958 3.3e-13 78.6 108 50.9
CAN.G821.8 Capsicum annuum HOM05D004268 ORTHO05D004958 4.3e-13 78.2 88 54.5
FAN21G1561 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.3e-12 76.6 108 50.9
Sed0025860 Sechium edule HOM05D004268 ORTHO05D004958 1.3e-12 76.6 113 46.9
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 1.3e-12 76.6 110 45.5
Dinv43432 Davidia involucrata HOM05D004268 ORTHO05D004958 2.1e-12 75.9 94 53.2
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 2.1e-12 75.9 110 45.5
QL01p004491 Quercus lobata HOM05D004268 ORTHO05D004958 2.1e-12 75.9 111 48.6
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 2.8e-12 75.5 109 50.5
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 2.8e-12 75.5 109 50.5
Solyc01g008510.3 Solanum lycopersicum HOM05D004268 ORTHO05D004958 2.8e-12 75.5 119 44.5
Potri.001G265000 Populus trichocarpa HOM05D004268 ORTHO05D004958 3.7e-12 75.1 88 55.7
Eucgr.B03692 Eucalyptus grandis HOM05D004268 ORTHO05D004958 4.8e-12 74.7 111 47.7
Nn7g36237 Nelumbo nucifera HOM05D004268 ORTHO05D004958 8.2e-12 73.9 114 42.1
Nn7g36238 Nelumbo nucifera HOM05D004268 ORTHO05D004958 8.2e-12 73.9 114 42.1
Sopen01g004050 Solanum pennellii HOM05D004268 ORTHO05D004958 8.2e-12 73.9 119 43.7
TWI32G0064 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 1.8e-11 72.8 104 43.3
PGSC0003DMG400010498 Solanum tuberosum HOM05D004268 ORTHO05D004958 2.4e-11 72.4 88 50.0
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 3.1e-11 72.0 109 49.5
Os02g0581100 Oryza sativa ssp. japonica HOM05D004268 ORTHO05D004958 5.3e-11 71.2 123 39.8
SEGI_11181 Sequoiadendron giganteum HOM05D004268 ORTHO05D004958 1.2e-10 70.1 120 42.5
PGSC0003DMG400019098 Solanum tuberosum HOM05D004268 ORTHO05D004958 1.2e-10 70.1 119 42.9
Prupe.4G250700 Prunus persica HOM05D004268 ORTHO05D004958 4.5e-10 68.2 109 45.0
MD03G1173700 Malus domestica HOM05D004268 ORTHO05D004958 7.6e-10 67.4 114 46.5
MD11G1191900 Malus domestica HOM05D004268 ORTHO05D004958 7.6e-10 67.4 111 45.9
PGSC0003DMG400004639 Solanum tuberosum HOM05D004268 ORTHO05D004958 7.6e-10 67.4 110 43.6
Rhsim01G0129200 Rhododendron simsii HOM05D000074 ORTHO05D004958 1.3e-09 66.6 100 49.0
Dinv22170 Davidia involucrata HOM05D004268 ORTHO05D004958 1.7e-09 66.2 96 50.0
HanXRQChr13g0401101 Helianthus annuus HOM05D004268 ORTHO05D004958 1.7e-09 66.2 113 45.1
BcaC09g49044 Brassica carinata HOM05D004268 ORTHO05D004958 2.9e-09 65.5 109 42.2
CSS0050517 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 2.9e-09 65.5 113 45.1
Zm00001eb245320 Zea mays HOM05D004268 ORTHO05D004958 2.9e-09 65.5 112 40.2
CSS0020424 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 1.1e-08 63.5 109 45.0
Migut.N02326 Erythranthe guttata HOM05D004268 ORTHO05D004958 1.1e-08 63.5 37 83.8
Lalb_Chr01g0000351 Lupinus albus HOM05D004268 ORTHO05D004958 1.1e-08 63.5 108 42.6
Nitab4.5_0004438g0050 Nicotiana tabacum HOM05D004268 ORTHO05D004958 1.1e-08 63.5 109 40.4
Solyc12g099650.2 Solanum lycopersicum HOM05D004268 ORTHO05D004958 1.4e-08 63.2 112 42.0
BraA01t03491Z Brassica rapa HOM05D004268 ORTHO05D004958 1.9e-08 62.8 107 43.9
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 1.9e-08 62.8 116 43.1
ATR0763G199 Amborella trichopoda HOM05D004268 ORTHO05D004958 2.5e-08 62.4 112 44.6
COL.COLO4_04862 Corchorus olitorius HOM05D001393 ORTHO05D007477 2.5e-08 62.4 107 39.3
C01p43220 Brassica napus HOM05D004268 ORTHO05D004958 4.2e-08 61.6 107 41.1
Mapoly0111s0017 Marchantia polymorpha HOM05D024154 ORTHO05D023530 5.5e-08 61.2 62 54.8
A01p33800 Brassica napus HOM05D004268 ORTHO05D004958 9.3e-08 60.5 107 43.0
Migut.D00609 Erythranthe guttata HOM05D004268 ORTHO05D004958 1.6e-07 59.7 35 80.0
BraA06t23458Z Brassica rapa HOM05D004268 ORTHO05D004958 2.1e-07 59.3 109 43.1
Oeu033136.1 Olea europaea HOM05D004268 ORTHO05D004958 3.5e-07 58.5 37 81.1
BolC1t04268H Brassica oleracea HOM05D004268 ORTHO05D004958 4.6e-07 58.2 107 40.2
Nitab4.5_0002741g0110 Nicotiana tabacum HOM05D004268 ORTHO05D004958 6.0e-07 57.8 36 83.3
Actinidia16340 Actinidia chinensis HOM05D004268 ORTHO05D004958 1.8e-06 56.2 97 43.3
CBR_g18875 Chara braunii HOM05D024154 ORTHO05D023530 1.8e-06 56.2 93 39.8
Sp3g19010 Schrenkiella parvula HOM05D004268 ORTHO05D004958 1.8e-06 56.2 107 41.1
BcaB07g33586 Brassica carinata HOM05D004268 ORTHO05D004958 2.3e-06 55.8 28 89.3
Aqoxy1G00277 Aquilegia oxysepala HOM05D004268 ORTHO05D004958 3.0e-06 55.5 39 69.2
BcaB04g20616 Brassica carinata HOM05D004268 ORTHO05D004958 8.7e-06 53.9 28 85.7
Nitab4.5_0000570g0060 Nicotiana tabacum HOM05D004268 ORTHO05D004958 8.7e-06 53.9 109 36.7


User provided reference genes

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