Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr3g028730 Medicago truncatula HOM05D003972 ORTHO05D004609 9.6e-125 450.3 245 100.0
Psat5g207400 Pisum sativum HOM05D003972 ORTHO05D004609 5.6e-109 397.9 245 86.9
TPR.G12160 Trifolium pratense HOM05D003972 ORTHO05D004609 1.0e-105 387.1 245 83.7
Ca_14380_v3 Cicer arietinum L. HOM05D003972 ORTHO05D004609 1.7e-105 386.3 245 82.0
arahy.Tifrunner.gnm1.ann1.XF35YI Arachis hypogaea HOM05D003972 ORTHO05D004609 3.6e-95 352.1 243 76.1
arahy.Tifrunner.gnm1.ann1.9I3PL7 Arachis hypogaea HOM05D003972 ORTHO05D004609 6.1e-95 351.3 243 75.7
Glyma.15G273900 Glycine max HOM05D003972 ORTHO05D004609 7.4e-93 344.4 243 74.1
Glyma.08G155200 Glycine max HOM05D003972 ORTHO05D004609 1.8e-91 339.7 243 73.3
Phvul.005G021000 Phaseolus vulgaris HOM05D003972 ORTHO05D004609 3.4e-90 335.5 243 71.2
VMungo1080G1024 Vigna mungo HOM05D003972 ORTHO05D004609 5.9e-90 334.7 243 71.6
Lj4g0010030 Lotus japonicus HOM05D003972 ORTHO05D004609 3.8e-89 332.0 243 74.9
Lalb_Chr11g0073961 Lupinus albus HOM05D003972 ORTHO05D004609 2.1e-87 326.2 242 72.3
Lalb_Chr08g0232821 Lupinus albus HOM05D003972 ORTHO05D004609 1.1e-85 320.5 243 71.6
CSS0031611 Camellia sinensis var. sinensis HOM05D003972 ORTHO05D004609 8.2e-76 287.7 248 60.9
PGSC0003DMG400006869 Solanum tuberosum HOM05D003972 ORTHO05D004609 2.0e-74 283.1 241 63.1
Thecc.01G411300 Theobroma cacao HOM05D003972 ORTHO05D004609 4.5e-74 282.0 244 61.9
MELO3C023548.2 Cucumis melo HOM05D003972 ORTHO05D004609 2.9e-73 279.3 245 62.0
Atru.chr11.2659 Acer truncatum HOM05D003972 ORTHO05D004609 6.5e-73 278.1 248 59.7
CiPaw.13G004600 Carya illinoinensis HOM05D003972 ORTHO05D004609 6.5e-73 278.1 241 59.8
Prupe.2G012700 Prunus persica HOM05D003972 ORTHO05D004609 6.5e-73 278.1 247 60.3
Sopen01g034180 Solanum pennellii HOM05D003972 ORTHO05D004609 6.5e-73 278.1 241 61.4
HanXRQChr17g0562951 Helianthus annuus HOM05D003972 ORTHO05D004609 1.1e-72 277.3 247 59.9
Hund16627 Selenicereus undatus HOM05D003972 ORTHO05D004609 1.5e-72 276.9 244 62.7
Solyc01g087120.3 Solanum lycopersicum HOM05D003972 ORTHO05D004609 3.2e-72 275.8 241 61.0
Peaxi162Scf00428g00211 Petunia axillaris HOM05D003972 ORTHO05D004609 4.2e-72 275.4 241 63.1
Duzib268G1708 Durio zibethinus HOM05D003972 ORTHO05D004609 7.2e-72 274.6 247 61.1
PSO384G2850 Papaver somniferum HOM05D003972 ORTHO05D004609 9.4e-72 274.2 244 61.1
CAN.G1560.6 Capsicum annuum HOM05D003972 ORTHO05D004609 1.6e-71 273.5 237 62.4
Lsat_1_v5_gn_1_107421 Lactuca sativa HOM05D003972 ORTHO05D004609 1.6e-71 273.5 249 59.4
Manes.10G143400 Manihot esculenta HOM05D003972 ORTHO05D004609 1.6e-71 273.5 246 58.5
PSO339G6021 Papaver somniferum HOM05D003972 ORTHO05D004609 1.6e-71 273.5 244 61.1
HanXRQChr01g0016231 Helianthus annuus HOM05D003972 ORTHO05D004609 2.1e-71 273.1 250 59.6
GSVIVG01032087001 Vitis vinifera HOM05D003972 ORTHO05D004609 2.7e-71 272.7 247 59.5
CsaV3_7G031080 Cucumis sativus L. HOM05D003972 ORTHO05D004609 4.7e-71 271.9 247 59.9
MD07G1010400 Malus domestica HOM05D003972 ORTHO05D004609 6.1e-71 271.6 248 59.3
Nitab4.5_0000634g0150 Nicotiana tabacum HOM05D003972 ORTHO05D004609 6.1e-71 271.6 241 60.6
MSTRG.28071 Avicennia marina HOM05D003972 ORTHO05D004609 1.0e-70 270.8 246 58.1
HanXRQChr16g0524521 Helianthus annuus HOM05D003972 ORTHO05D004609 1.0e-70 270.8 228 61.4
TWI73G1179 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 1.8e-70 270.0 246 57.7
Nn2g15387 Nelumbo nucifera HOM05D003972 ORTHO05D004609 2.3e-70 269.6 241 60.2
PGR044G2681 Punica granatum HOM05D003972 ORTHO05D004609 2.3e-70 269.6 246 58.5
ClCG09G004190 Citrullus lanatus HOM05D003972 ORTHO05D004609 3.0e-70 269.2 246 60.2
Haze_03211 Corylus avellana HOM05D000015 ORTHO05D004609 4.0e-70 268.9 275 57.1
MD02G1312800 Malus domestica HOM05D003972 ORTHO05D004609 4.0e-70 268.9 248 58.5
Migut.N01593 Erythranthe guttata HOM05D003972 ORTHO05D004609 6.7e-70 268.1 248 57.3
Actinidia20668 Actinidia chinensis HOM05D003972 ORTHO05D004609 8.8e-70 267.7 248 57.7
TWI09G1021 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 1.2e-69 267.3 247 56.7
Gohir.D12G096966 Gossypium hirsutum HOM05D003972 ORTHO05D004609 1.5e-69 266.9 246 58.5
Duzib138G0053 Durio zibethinus HOM05D003972 ORTHO05D004609 2.0e-69 266.5 246 58.5
MSTRG.5022 Avicennia marina HOM05D003972 ORTHO05D004609 2.6e-69 266.2 248 58.5
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 4.4e-69 265.4 225 61.8
Gorai.008G105300 Gossypium raimondii HOM05D003972 ORTHO05D004609 4.4e-69 265.4 246 58.1
Nn7g36192 Nelumbo nucifera HOM05D003972 ORTHO05D004609 4.4e-69 265.4 241 59.8
EL10Ac3g05626 Beta vulgaris HOM05D003972 ORTHO05D004609 5.7e-69 265.0 243 59.3
TAR633G1993 Trochodendron aralioides HOM05D003972 ORTHO05D004609 5.7e-69 265.0 249 59.0
ECA248G3800 Erigeron canadensis HOM05D003972 ORTHO05D004609 7.5e-69 264.6 245 59.6
Gohir.A12G094100 Gossypium hirsutum HOM05D003972 ORTHO05D004609 1.3e-68 263.8 246 58.1
Hund14179 Selenicereus undatus HOM05D003972 ORTHO05D004609 1.3e-68 263.8 244 59.0
RcHm_v2.0_Chr1g0315911 Rosa chinensis HOM05D003972 ORTHO05D004609 1.7e-68 263.5 247 55.9
SalBow6G4991 Salvia bowleyana HOM05D003972 ORTHO05D004609 1.7e-68 263.5 240 59.2
TAR633G2347 Trochodendron aralioides HOM05D003972 ORTHO05D004609 1.7e-68 263.5 247 58.7
Rhsim07G0055300 Rhododendron simsii HOM05D003972 ORTHO05D004609 2.8e-68 262.7 248 58.1
AUR62027419 Chenopodium quinoa HOM05D003972 ORTHO05D004609 3.7e-68 262.3 237 59.5
Sed0017110 Sechium edule HOM05D003972 ORTHO05D004609 6.3e-68 261.5 245 58.4
Lj7A570T56 Lonicera japonica HOM05D003972 ORTHO05D004609 1.4e-67 260.4 258 57.0
MBI04_g36067_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 1.8e-67 260.0 248 56.5
Oeu047573.1 Olea europaea HOM05D003972 ORTHO05D004609 1.8e-67 260.0 225 61.8
SalBow8G4898 Salvia bowleyana HOM05D003972 ORTHO05D004609 2.4e-67 259.6 236 59.3
FvH4_7g01010 Fragaria vesca HOM05D003972 ORTHO05D004609 3.1e-67 259.2 243 56.4
FAN06G4274 Fragaria x ananassa HOM05D003972 ORTHO05D004609 3.1e-67 259.2 243 56.4
FAN10G2592 Fragaria x ananassa HOM05D003972 ORTHO05D004609 3.1e-67 259.2 243 56.4
Nitab4.5_0002179g0040 Nicotiana tabacum HOM05D003972 ORTHO05D004609 5.3e-67 258.5 276 53.6
QL04p006659 Quercus lobata HOM05D003972 ORTHO05D004609 1.6e-66 256.9 203 64.5
CANSAT80G0274 Cannabis sativa HOM05D003972 ORTHO05D004609 2.7e-66 256.1 248 55.6
Aqoxy2G00123 Aquilegia oxysepala HOM05D003972 ORTHO05D004609 4.5e-66 255.4 249 56.2
AUR62009382 Chenopodium quinoa HOM05D003972 ORTHO05D004609 4.5e-66 255.4 245 57.6
SalBow5G3531 Salvia bowleyana HOM05D003972 ORTHO05D004609 5.9e-66 255.0 249 55.4
FAN03G0639 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.3e-65 253.8 248 55.2
FAN01G2341 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.7e-65 253.4 248 54.8
Oeu014581.1 Olea europaea HOM05D003972 ORTHO05D004609 1.7e-65 253.4 256 53.5
vmacro13664 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 2.9e-65 252.7 249 56.2
Ciclev10032620m.g Citrus clementina HOM05D003972 ORTHO05D004609 6.5e-65 251.5 241 55.6
PGR042G2196 Punica granatum HOM05D003972 ORTHO05D004609 8.5e-65 251.1 244 57.4
Sc11g0009210 Simmondsia chinensis HOM05D003972 ORTHO05D004609 1.5e-64 250.4 188 67.0
MBI01_g18885_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 1.9e-64 250.0 246 56.1
BraA03t09936Z Brassica rapa HOM05D003972 ORTHO05D004609 4.2e-64 248.8 243 54.3
DCAR_006337 Daucus carota HOM05D003972 ORTHO05D004609 7.2e-64 248.1 237 58.6
COL.COLO4_23932 Corchorus olitorius HOM05D003972 ORTHO05D004609 9.4e-64 247.7 274 51.5
Potri.009G061600 Populus trichocarpa HOM05D003972 ORTHO05D004609 1.2e-63 247.3 241 53.1
C09p63620 Brassica napus HOM05D003972 ORTHO05D004609 1.6e-63 246.9 246 54.5
BolC9t59206H Brassica oleracea HOM05D003972 ORTHO05D004609 1.6e-63 246.9 246 54.1
Oeu006575.2 Olea europaea HOM05D003972 ORTHO05D004609 1.6e-63 246.9 248 55.2
BraA10t44544Z Brassica rapa HOM05D003972 ORTHO05D004609 2.1e-63 246.5 246 53.7
CDE05G0778 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 2.1e-63 246.5 247 53.0
Sed0003633 Sechium edule HOM05D003972 ORTHO05D004609 2.1e-63 246.5 242 55.4
A03p05990 Brassica napus HOM05D003972 ORTHO05D004609 3.6e-63 245.7 243 53.9
Sp6g30570 Schrenkiella parvula HOM05D003972 ORTHO05D004609 4.7e-63 245.4 246 52.8
CDE05G2400 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 6.1e-63 245.0 243 54.3
BcaNung01153 Brassica carinata HOM05D003972 ORTHO05D004609 8.0e-63 244.6 243 53.1
C03p07030 Brassica napus HOM05D003972 ORTHO05D004609 8.0e-63 244.6 243 54.3
BolC2t06557H Brassica oleracea HOM05D003972 ORTHO05D004609 8.0e-63 244.6 243 53.1
BolC3t13201H Brassica oleracea HOM05D003972 ORTHO05D004609 8.0e-63 244.6 243 54.3
AUR62027358 Chenopodium quinoa HOM05D003972 ORTHO05D004609 1.0e-62 244.2 236 57.2
A10p24800 Brassica napus HOM05D003972 ORTHO05D004609 1.4e-62 243.8 243 53.5
Sabra09G0045500 Salix brachista HOM05D003972 ORTHO05D004609 1.4e-62 243.8 241 52.3
unitig_8.g3624 Utricularia gibba HOM05D003972 ORTHO05D004609 1.8e-62 243.4 248 54.8
Aa31LG3G15250 Aethionema arabicum HOM05D003972 ORTHO05D004609 2.3e-62 243.0 258 51.6
CARHR199980 Cardamine hirsuta HOM05D003972 ORTHO05D004609 3.0e-62 242.7 243 53.1
Thhalv10014516m.g Eutrema salsugineum HOM05D003972 ORTHO05D004609 5.2e-62 241.9 246 52.0
Lsat_1_v5_gn_1_107400 Lactuca sativa HOM05D003972 ORTHO05D004609 5.2e-62 241.9 251 55.0
BcaNung01885 Brassica carinata HOM05D003972 ORTHO05D004609 8.8e-62 241.1 243 52.7
A02p01940 Brassica napus HOM05D003972 ORTHO05D004609 8.8e-62 241.1 243 52.7
BraA02t05167Z Brassica rapa HOM05D003972 ORTHO05D004609 8.8e-62 241.1 243 52.7
BcaC04g19115 Brassica carinata HOM05D003972 ORTHO05D004609 1.2e-61 240.7 243 53.1
Ah.06g182390 Amaranthus hybridus HOM05D003972 ORTHO05D004609 7.5e-61 238.0 260 53.8
THA.LOC104809854 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 9.8e-61 237.7 243 51.9
Carub.0006s1161 Capsella rubella HOM05D003972 ORTHO05D004609 1.7e-60 236.9 246 51.6
Aa31LG5G18610 Aethionema arabicum HOM05D003972 ORTHO05D004609 3.7e-60 235.7 263 49.8
ClCG10G012410 Citrullus lanatus HOM05D003972 ORTHO05D004609 3.7e-60 235.7 269 50.2
AL6G24070 Arabidopsis lyrata HOM05D003972 ORTHO05D004609 8.3e-60 234.6 246 51.6
HPP92_003787 Vanilla planifolia HOM05D003972 ORTHO05D004609 3.1e-59 232.6 248 51.2
BcaB01g05358 Brassica carinata HOM05D003972 ORTHO05D004609 5.4e-59 231.9 249 52.2
ATR0605G205 Amborella trichopoda HOM05D003972 ORTHO05D004609 2.7e-58 229.6 246 52.8
AT5G13450 Arabidopsis thaliana HOM05D003972 ORTHO05D004609 1.3e-57 227.3 238 50.4
FvH4_5g10590 Fragaria vesca HOM05D003972 ORTHO05D004609 3.8e-57 225.7 253 50.2
Ah.06g182400 Amaranthus hybridus HOM05D003972 ORTHO05D004609 3.2e-56 222.6 274 50.4
THA.LOC104819071 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 4.2e-56 222.2 239 49.4
FAN18G0724 Fragaria x ananassa HOM05D003972 ORTHO05D004609 7.2e-56 221.5 244 50.4
FAN13G3241 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.1e-55 219.9 253 49.0
Os06g0646500 Oryza sativa ssp. japonica HOM05D003972 ORTHO05D004609 2.8e-55 219.5 189 58.2
RcHm_v2.0_Chr7g0187561 Rosa chinensis HOM05D003972 ORTHO05D004609 3.6e-55 219.2 250 48.4
FAN04G1554 Fragaria x ananassa HOM05D003972 ORTHO05D004609 8.0e-55 218.0 253 48.2
Lj9A631T54 Lonicera japonica HOM05D003972 ORTHO05D004609 6.8e-54 214.9 250 50.8
vmacro21185 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 3.7e-52 209.1 354 40.4
SGA_v2.0_scaffold24G10676 Striga asiatica HOM05D003972 ORTHO05D004609 8.3e-52 208.0 232 51.3
SHI04087 Sapria himalayana HOM05D003972 ORTHO05D004609 3.1e-51 206.1 202 51.5
SGA_v2.0_scaffold5G02971 Striga asiatica HOM05D003972 ORTHO05D004609 7.0e-51 204.9 359 39.0
Zm00001eb188600 Zea mays HOM05D003972 ORTHO05D004609 4.5e-50 202.2 244 48.4
Sed0014658 Sechium edule HOM05D003972 ORTHO05D004609 9.5e-48 194.5 238 50.0
SalBow5G0402 Salvia bowleyana HOM05D003972 ORTHO05D004609 4.0e-46 189.1 243 48.1
Cc02_g27920 Coffea canephora HOM05D003972 ORTHO05D004609 6.8e-46 188.3 194 55.7
Dinv43448 Davidia involucrata HOM05D003972 ORTHO05D004609 4.9e-44 182.2 206 51.5
Cpa.g.sc245.17 Carica papaya HOM05D003972 ORTHO05D004609 7.0e-43 178.3 241 45.6
SEGI_23171 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 7.0e-43 178.3 219 45.7
Rhsim01G0129500 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.2e-42 177.6 289 41.9
SEGI_22482 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 5.2e-38 162.2 188 48.4
Pp3c21_15430 Physcomitrium patens HOM05D003972 ORTHO05D004609 8.9e-38 161.4 202 42.1
Pp3c21_13430 Physcomitrium patens HOM05D003972 ORTHO05D004609 1.2e-37 161.0 207 42.0
Mapoly0003s0068 Marchantia polymorpha HOM05D003972 ORTHO05D004609 6.4e-36 155.2 214 42.1
Haze_18530 Corylus avellana HOM05D003972 ORTHO05D004609 4.1e-35 152.5 160 53.1
CBR_g17944 Chara braunii HOM05D003972 ORTHO05D004609 2.7e-34 149.8 187 43.9
MELO3C030924.2 Cucumis melo HOM05D003972 ORTHO05D004609 1.0e-33 147.9 141 55.3
BcaB06g27143 Brassica carinata HOM05D003972 ORTHO05D004609 3.9e-33 146.0 141 53.2
QL04p007936 Quercus lobata HOM05D003972 ORTHO05D004609 3.9e-33 146.0 160 51.9
Haze_20480 Corylus avellana HOM05D003972 ORTHO05D004609 5.0e-33 145.6 117 65.0
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 2.8e-31 139.8 107 61.7
CsaV3_3G032180 Cucumis sativus L. HOM05D003972 ORTHO05D004609 3.4e-29 132.9 96 66.7
Pp3c11_16260 Physcomitrium patens HOM05D003972 ORTHO05D004609 1.6e-26 124.0 193 38.3
Eucgr.I01987 Eucalyptus grandis HOM05D003972 ORTHO05D004609 4.6e-26 122.5 143 46.9
Actinidia21554 Actinidia chinensis HOM05D003972 ORTHO05D004609 6.0e-26 122.1 152 46.7
SMO228G0064 Selaginella moellendorffii HOM05D003972 ORTHO05D004609 3.3e-24 116.3 186 34.9
AagrBONN_evm.TU.Sc2ySwM_344.1217 Anthoceros agrestis HOM05D003972 ORTHO05D004609 1.1e-22 111.3 156 41.0
PRCOL_00004246 Prasinoderma coloniale HOM05D003972 ORTHO05D004609 1.2e-21 107.8 189 35.4
MCO05G116 Micromonas commoda HOM05D003972 ORTHO05D004609 9.9e-21 104.8 184 32.1
Cpa.g.c41216 Carica papaya HOM05D003972 ORTHO05D004609 2.2e-20 103.6 69 69.6
GSVIVG01024256001 Vitis vinifera HOM05D003972 ORTHO05D004609 2.4e-19 100.1 82 59.8
Manes.07G005701 Manihot esculenta HOM05D003972 ORTHO05D004609 9.2e-19 98.2 100 52.0
Sc10g0000050 Simmondsia chinensis HOM05D003972 ORTHO05D004609 7.8e-18 95.1 68 63.2
Cre16.g680000 Chlamydomonas reinhardtii HOM05D003972 ORTHO05D004609 4.7e-15 85.9 191 29.3
CsaV3_3G032190 Cucumis sativus L. HOM05D003972 ORTHO05D004609 8.1e-15 85.1 119 42.9
Rhsim01G0081100 Rhododendron simsii HOM05D003972 ORTHO05D004609 6.4e-12 75.5 70 58.6
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 8.4e-12 75.1 66 54.5
Rhsim02G0048300 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.9e-11 73.9 70 55.7
MELO3C030665.2 Cucumis melo HOM05D003972 ORTHO05D004609 2.4e-11 73.6 64 56.2
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 7.1e-11 72.0 66 53.0
Rhsim02G0189700 Rhododendron simsii HOM05D003972 ORTHO05D004609 7.1e-11 72.0 76 50.0
Rhsim01G0052900 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.2e-10 71.2 70 54.3
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 8.7e-09 65.1 81 45.7
arahy.Tifrunner.gnm1.ann1.4Z64RL Arachis hypogaea HOM05D003972 ORTHO05D082339 7.3e-08 62.0 48 64.6
Phvul.003G211100 Phaseolus vulgaris HOM05D003160 ORTHO05D005967 9.6e-08 61.6 216 25.0
vmacro04777 Vaccinium macrocarpon HOM05D003160 ORTHO05D005967 1.3e-07 61.2 177 26.6
Glyma.05G048000 Glycine max HOM05D003160 ORTHO05D005967 2.8e-07 60.1 171 25.7
Glyma.17G130100 Glycine max HOM05D003160 ORTHO05D005967 3.6e-07 59.7 167 25.1
Cre11.g467569 Chlamydomonas reinhardtii HOM05D003160 ORTHO05D005967 6.2e-07 58.9 172 28.5
TAR381G0896 Trochodendron aralioides HOM05D003160 ORTHO05D005967 3.1e-06 56.6 176 23.3
PRCOL_00001524 Prasinoderma coloniale HOM05D003160 ORTHO05D005967 4.0e-06 56.2 135 31.9


User provided reference genes

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