Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr3g026780 Medicago truncatula HOM05D005463 ORTHO05D006900 2.3e-128 462.2 235 100.0
Psat5g207280 Pisum sativum HOM05D005463 ORTHO05D006900 5.0e-123 444.5 234 96.2
Medtr7g034345 Medicago truncatula HOM05D005463 ORTHO05D006900 8.6e-123 443.7 234 95.7
Ca_22203_v3 Cicer arietinum L. HOM05D005463 ORTHO05D006900 1.5e-119 433.0 234 94.4
TPR.G12169 Trifolium pratense HOM05D005463 ORTHO05D006900 2.2e-118 429.1 234 93.2
Phvul.005G038200 Phaseolus vulgaris HOM05D005463 ORTHO05D006900 2.4e-117 425.6 234 92.7
VMungo1080G0018 Vigna mungo HOM05D005463 ORTHO05D006900 4.1e-117 424.9 234 92.3
Lalb_Chr25g0283441 Lupinus albus HOM05D005463 ORTHO05D006900 6.0e-116 421.0 233 91.4
arahy.Tifrunner.gnm1.ann1.35ND81 Arachis hypogaea HOM05D005463 ORTHO05D006900 7.8e-116 420.6 234 91.5
Lj3g0018047 Lotus japonicus HOM05D005463 ORTHO05D006900 6.6e-115 417.5 234 89.7
Glyma.08G150800 Glycine max HOM05D005463 ORTHO05D006900 8.1e-113 410.6 235 90.2
QL04p003263 Quercus lobata HOM05D005463 ORTHO05D006900 6.8e-112 407.5 233 88.0
Glyma.15G270200 Glycine max HOM05D005463 ORTHO05D006900 1.5e-111 406.4 234 89.3
RcHm_v2.0_Chr6g0277781 Rosa chinensis HOM05D005463 ORTHO05D006900 1.3e-110 403.3 233 85.8
CiPaw.13G001800 Carya illinoinensis HOM05D005463 ORTHO05D006900 2.9e-110 402.1 233 87.1
ClCG09G003850 Citrullus lanatus HOM05D005463 ORTHO05D006900 6.4e-110 401.0 233 85.8
Cfa010722 Carpinus fangiana HOM05D005463 ORTHO05D006900 8.4e-110 400.6 233 85.8
Haze_03251 Corylus avellana HOM05D005463 ORTHO05D006900 8.4e-110 400.6 233 86.3
Prupe.2G005900 Prunus persica HOM05D005463 ORTHO05D006900 1.4e-109 399.8 233 85.4
CsaV3_7G031380 Cucumis sativus L. HOM05D005463 ORTHO05D006900 1.9e-109 399.4 233 85.0
MELO3C023520.2 Cucumis melo HOM05D005463 ORTHO05D006900 3.2e-109 398.7 233 85.0
RcHm_v2.0_Chr1g0314251 Rosa chinensis HOM05D005463 ORTHO05D006900 5.4e-109 397.9 235 85.1
FAN10G2111 Fragaria x ananassa HOM05D005463 ORTHO05D006900 1.2e-108 396.7 236 84.7
Manes.10G148700 Manihot esculenta HOM05D005463 ORTHO05D006900 1.2e-108 396.7 233 86.3
FvH4_7g00480 Fragaria vesca HOM05D005463 ORTHO05D006900 2.1e-108 396.0 236 84.7
FAN06G3192 Fragaria x ananassa HOM05D005463 ORTHO05D006900 2.1e-108 396.0 236 84.7
Eucgr.H00541 Eucalyptus grandis HOM05D005463 ORTHO05D006900 3.5e-108 395.2 233 85.0
DCAR_006305 Daucus carota HOM05D005463 ORTHO05D006900 4.6e-108 394.8 233 85.4
Lj7A567T29 Lonicera japonica HOM05D005463 ORTHO05D006900 4.6e-108 394.8 233 86.3
MD07G1002800 Malus domestica HOM05D005463 ORTHO05D006900 7.8e-108 394.0 233 85.0
CSS0012415 Camellia sinensis var. sinensis HOM05D005463 ORTHO05D006900 1.0e-107 393.7 233 86.3
CSS0041052 Camellia sinensis var. sinensis HOM05D005463 ORTHO05D006900 1.0e-107 393.7 233 86.3
Dinv43914 Davidia involucrata HOM05D005463 ORTHO05D006900 5.1e-107 391.3 233 85.4
FAN03G0244 Fragaria x ananassa HOM05D005463 ORTHO05D006900 6.6e-107 391.0 236 83.9
A04p13900 Brassica napus HOM05D005463 ORTHO05D006900 8.6e-107 390.6 233 85.4
BraA04t17055Z Brassica rapa HOM05D005463 ORTHO05D006900 8.6e-107 390.6 233 85.4
Manes.07G002600 Manihot esculenta HOM05D005463 ORTHO05D006900 8.6e-107 390.6 233 84.5
Solyc01g086650.3 Solanum lycopersicum HOM05D005463 ORTHO05D006900 8.6e-107 390.6 233 85.0
Sopen01g033670 Solanum pennellii HOM05D005463 ORTHO05D006900 8.6e-107 390.6 233 85.0
PGSC0003DMG400025254 Solanum tuberosum HOM05D005463 ORTHO05D006900 8.6e-107 390.6 233 85.0
BcaB06g27564 Brassica carinata HOM05D005463 ORTHO05D006900 1.1e-106 390.2 233 85.4
BcaC02g08999 Brassica carinata HOM05D005463 ORTHO05D006900 1.1e-106 390.2 233 85.4
BolC4t26367H Brassica oleracea HOM05D005463 ORTHO05D006900 1.1e-106 390.2 233 85.4
Peaxi162Scf00058g00512 Petunia axillaris HOM05D005463 ORTHO05D006900 1.5e-106 389.8 229 86.5
PGR083G1038 Punica granatum HOM05D005463 ORTHO05D006900 1.5e-106 389.8 235 84.3
TWI77G0271 Tripterygium wilfordii HOM05D005463 ORTHO05D006900 1.5e-106 389.8 235 84.3
C04p47660 Brassica napus HOM05D005463 ORTHO05D006900 2.5e-106 389.0 233 85.0
Rhsim07G0052500 Rhododendron simsii HOM05D005463 ORTHO05D006900 2.5e-106 389.0 233 85.4
Ciclev10031826m.g Citrus clementina HOM05D005463 ORTHO05D006900 3.3e-106 388.7 233 84.1
THA.LOC104819056 Tarenaya hassleriana HOM05D005463 ORTHO05D006900 3.3e-106 388.7 235 85.1
vmacro13633 Vaccinium macrocarpon HOM05D005463 ORTHO05D006900 4.3e-106 388.3 236 84.7
Gohir.D10G064800 Gossypium hirsutum HOM05D005463 ORTHO05D006900 5.6e-106 387.9 236 84.7
Thhalv10027799m.g Eutrema salsugineum HOM05D005463 ORTHO05D006900 7.3e-106 387.5 233 84.5
Sp7g01080 Schrenkiella parvula HOM05D005463 ORTHO05D006900 7.3e-106 387.5 233 84.5
BcaB02g07924 Brassica carinata HOM05D005463 ORTHO05D006900 9.6e-106 387.1 233 84.5
Thecc.01G415300 Theobroma cacao HOM05D005463 ORTHO05D006900 9.6e-106 387.1 234 85.5
CAN.G1393.12 Capsicum annuum HOM05D005463 ORTHO05D006900 1.2e-105 386.7 233 84.1
Lsat_1_v5_gn_4_46300 Lactuca sativa HOM05D005463 ORTHO05D006900 1.2e-105 386.7 233 83.7
Carub.0007s3465 Capsella rubella HOM05D005463 ORTHO05D006900 2.8e-105 385.6 233 84.1
Nitab4.5_0006866g0010 Nicotiana tabacum HOM05D005463 ORTHO05D006900 2.8e-105 385.6 233 84.1
TAR623G0821 Trochodendron aralioides HOM05D005463 ORTHO05D006900 2.8e-105 385.6 234 83.8
AT5G40850 Arabidopsis thaliana HOM05D005463 ORTHO05D006900 3.6e-105 385.2 233 84.1
SalBow4G1191 Salvia bowleyana HOM05D005463 ORTHO05D006900 3.6e-105 385.2 233 84.5
Duzib114G0804 Durio zibethinus HOM05D005463 ORTHO05D006900 4.7e-105 384.8 233 84.5
AL7G48760 Arabidopsis lyrata HOM05D005463 ORTHO05D006900 6.2e-105 384.4 233 84.1
Cc02_g27320 Coffea canephora HOM05D005463 ORTHO05D006900 8.1e-105 384.0 233 83.7
Sed0008391 Sechium edule HOM05D005463 ORTHO05D006900 8.1e-105 384.0 233 85.0
TAR369G0415 Trochodendron aralioides HOM05D005463 ORTHO05D006900 8.1e-105 384.0 233 83.3
TWI74G0716 Tripterygium wilfordii HOM05D005463 ORTHO05D006900 1.1e-104 383.6 235 83.0
CANSAT11G2548 Cannabis sativa HOM05D005463 ORTHO05D006900 1.4e-104 383.3 235 83.8
Nitab4.5_0002239g0050 Nicotiana tabacum HOM05D005463 ORTHO05D006900 1.8e-104 382.9 233 84.1
Gorai.011G068800 Gossypium raimondii HOM05D005463 ORTHO05D006900 3.1e-104 382.1 237 84.0
CARHR213670 Cardamine hirsuta HOM05D005463 ORTHO05D006900 5.2e-104 381.3 233 83.7
MBI07_g21780_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 5.2e-104 381.3 234 82.9
Potri.001G226900 Populus trichocarpa HOM05D005463 ORTHO05D006900 6.8e-104 380.9 235 83.0
Sabra16G0135300 Salix brachista HOM05D005463 ORTHO05D006900 6.8e-104 380.9 235 82.6
Nn7g36051 Nelumbo nucifera HOM05D005463 ORTHO05D006900 8.9e-104 380.6 233 83.3
PSO541G2837 Papaver somniferum HOM05D005463 ORTHO05D006900 2.0e-103 379.4 233 83.3
Actinidia32326 Actinidia chinensis HOM05D005463 ORTHO05D006900 2.6e-103 379.0 232 84.1
Ah.05g166840 Amaranthus hybridus HOM05D005463 ORTHO05D006900 2.6e-103 379.0 235 81.3
COL.COLO4_23908 Corchorus olitorius HOM05D000259 ORTHO05D000155 4.4e-103 378.3 234 81.6
Migut.B01346 Erythranthe guttata HOM05D005463 ORTHO05D006900 4.4e-103 378.3 233 82.8
MBI19_g42082_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 4.4e-103 378.3 234 82.5
CDE09G0814 Ceratophyllum demersum HOM05D005463 ORTHO05D006900 7.6e-103 377.5 233 82.8
Hund11459 Selenicereus undatus HOM05D005463 ORTHO05D006900 9.9e-103 377.1 233 82.0
SGA_v2.0_scaffold4G02241 Striga asiatica HOM05D005463 ORTHO05D006900 2.2e-102 375.9 234 83.8
EL10Ac1g02324 Beta vulgaris HOM05D005463 ORTHO05D006900 2.9e-102 375.6 235 82.1
Oeu047540.1 Olea europaea HOM05D005463 ORTHO05D006900 3.8e-102 375.2 233 82.0
GSVIVG01032030001 Vitis vinifera HOM05D005463 ORTHO05D006900 8.4e-102 374.0 224 85.3
Aa31sc48G90 Aethionema arabicum HOM05D005463 ORTHO05D006900 1.4e-101 373.2 233 80.7
Aqoxy2G00060 Aquilegia oxysepala HOM05D005463 ORTHO05D006900 1.6e-100 369.8 235 81.7
AUR62034961 Chenopodium quinoa HOM05D005463 ORTHO05D006900 1.6e-100 369.8 231 80.5
AUR62035771 Chenopodium quinoa HOM05D005463 ORTHO05D006900 2.7e-100 369.0 231 79.7
SGA_v2.0_scaffold95G28785 Striga asiatica HOM05D005463 ORTHO05D006900 7.8e-100 367.5 267 74.2
Sc20g0006350 Simmondsia chinensis HOM05D005463 ORTHO05D006900 5.1e-99 364.8 233 79.0
HanXRQChr16g0520501 Helianthus annuus HOM05D005463 ORTHO05D006900 8.7e-99 364.0 233 79.0
ATR0709G016 Amborella trichopoda HOM05D005463 ORTHO05D006900 2.8e-97 359.0 235 78.7
Zm00001eb159150 Zea mays HOM05D005463 ORTHO05D006900 1.8e-96 356.3 233 79.4
ECA234G3252 Erigeron canadensis HOM05D005463 ORTHO05D006900 4.0e-96 355.1 233 78.1
Duzib138G0896 Durio zibethinus HOM05D005463 ORTHO05D006900 7.6e-95 350.9 236 79.2
Mapoly0087s0054 Marchantia polymorpha HOM05D005463 ORTHO05D006900 1.4e-93 346.7 230 73.9
MBI19_g47932_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 2.4e-93 345.9 234 77.4
HPP92_020287 Vanilla planifolia HOM05D005463 ORTHO05D006900 2.7e-92 342.4 238 73.9
Pp3c10_8730 Physcomitrium patens HOM05D005463 ORTHO05D006900 4.3e-90 335.1 235 70.2
SMO174G0240 Selaginella moellendorffii HOM05D005463 ORTHO05D006900 8.1e-89 330.9 201 78.6
Zm00001eb358930 Zea mays HOM05D005463 ORTHO05D006900 6.9e-88 327.8 235 73.6
unitig_61.g26444 Utricularia gibba HOM05D005463 ORTHO05D006900 1.2e-87 327.0 219 78.1
ATR1100G030 Amborella trichopoda HOM05D005463 ORTHO05D006900 7.6e-87 324.3 202 78.7
CBR_g4488 Chara braunii HOM05D005463 ORTHO05D006900 1.2e-84 317.0 237 66.7
Cpa.g.sc1133.2 Carica papaya HOM05D005463 ORTHO05D006900 1.1e-74 283.9 235 67.7
TPR.G33976 Trifolium pratense HOM05D005463 ORTHO05D006900 9.6e-74 280.8 227 68.3
Os01g0631200 Oryza sativa ssp. japonica HOM05D005463 ORTHO05D006900 2.4e-72 276.2 154 87.0
Cre09.g396401 Chlamydomonas reinhardtii HOM05D005463 ORTHO05D006900 9.0e-72 274.2 228 60.1
MBI10_g23170_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 1.3e-70 270.4 182 77.5
PRCOL_00005728 Prasinoderma coloniale HOM05D005463 ORTHO05D006900 1.9e-66 256.5 206 58.7
MCO12G109 Micromonas commoda HOM05D005463 ORTHO05D006900 2.2e-65 253.1 213 57.7
SEGI_24059 Sequoiadendron giganteum HOM05D005463 ORTHO05D006900 5.9e-63 245.0 171 71.3
Gohir.A10G063300 Gossypium hirsutum HOM05D005463 ORTHO05D006900 8.8e-59 231.1 164 76.8
AagrBONN_evm.TU.Sc2ySwM_344.3224 Anthoceros agrestis HOM05D005463 ORTHO05D006900 7.4e-50 201.4 203 56.7
Prupe.I005100 Prunus persica HOM05D005463 ORTHO05D006900 2.0e-47 193.4 118 82.2
arahy.Tifrunner.gnm1.ann1.UWT5DF Arachis hypogaea HOM05D005463 ORTHO05D006900 2.6e-47 193.0 103 92.2
Dinv43913 Davidia involucrata HOM05D005463 ORTHO05D006900 7.7e-47 191.4 123 82.1
RcHm_v2.0_Chr6g0260851 Rosa chinensis HOM05D005463 ORTHO05D006900 1.1e-45 187.6 134 74.6
RcHm_v2.0_Chr4g0408791 Rosa chinensis HOM05D005463 ORTHO05D006900 2.6e-42 176.4 103 84.5
Hma1.2p1_1089F.1_g255720 Hydrangea macrophylla HOM05D005463 ORTHO05D006900 1.2e-31 141.0 98 76.5
Oeu010361.1 Olea europaea HOM05D005463 ORTHO05D006900 1.2e-31 141.0 96 77.1
MSTRG.17019 Avicennia marina HOM05D005463 ORTHO05D006900 1.5e-29 134.0 97 74.2
MSTRG.17060 Avicennia marina HOM05D005463 ORTHO05D006900 4.2e-29 132.5 97 74.2
Cfa024173 Carpinus fangiana HOM05D005463 ORTHO05D006900 8.8e-27 124.8 204 38.2
Cre12.g538650 Chlamydomonas reinhardtii HOM05D005463 ORTHO05D044100 2.7e-23 113.2 205 35.1
Haze_27481 Corylus avellana HOM05D005463 ORTHO05D006900 3.3e-21 106.3 122 45.1
SEGI_02284 Sequoiadendron giganteum HOM05D005463 ORTHO05D006900 2.1e-20 103.6 65 70.8
MCO11G851 Micromonas commoda HOM05D005463 ORTHO05D044100 4.7e-20 102.4 201 33.3
CAN.G762.7 Capsicum annuum HOM05D005463 ORTHO05D006900 1.5e-18 97.4 77 68.8
RcHm_v2.0_Chr1g0375041 Rosa chinensis HOM05D005463 ORTHO05D006900 1.5e-18 97.4 50 94.0
ATR0709G040 Amborella trichopoda HOM05D005463 ORTHO05D006900 1.7e-14 84.0 65 63.1
Nn3g19661 Nelumbo nucifera HOM05D005463 ORTHO05D006900 1.7e-14 84.0 93 52.7


User provided reference genes

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