Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr3g025870 Medicago truncatula HOM05D003672 ORTHO05D004121 0.0e+00 1265.8 666 100.0
TPR.G12189 Trifolium pratense HOM05D003672 ORTHO05D004121 3.2e-284 981.5 691 76.4
Ca_14345_v3 Cicer arietinum L. HOM05D003672 ORTHO05D004121 1.8e-258 896.0 722 69.7
Psat2g037720 Pisum sativum HOM05D003672 ORTHO05D004121 1.5e-244 849.7 678 69.5
Lj1g0027425 Lotus japonicus HOM05D003672 ORTHO05D004121 2.2e-216 756.1 704 62.6
Glyma.04G162600 Glycine max HOM05D003672 ORTHO05D004121 6.3e-203 711.4 689 61.1
Glyma.06G203700 Glycine max HOM05D003672 ORTHO05D004121 3.1e-194 682.6 689 59.1
Phvul.010G007200 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 3.5e-185 652.5 676 58.3
VMungo0331G1159 Vigna mungo HOM05D003672 ORTHO05D004121 9.1e-178 627.9 665 57.9
arahy.Tifrunner.gnm1.ann1.SKH1UB Arachis hypogaea HOM05D003672 ORTHO05D004121 2.1e-158 563.5 705 51.3
arahy.Tifrunner.gnm1.ann1.N0JE3Z Arachis hypogaea HOM05D003672 ORTHO05D004121 1.5e-156 557.4 705 51.2
arahy.Tifrunner.gnm1.ann1.03S8MC Arachis hypogaea HOM05D003672 ORTHO05D004121 5.4e-154 548.9 719 49.0
arahy.Tifrunner.gnm1.ann1.R6LVKU Arachis hypogaea HOM05D003672 ORTHO05D004121 5.4e-154 548.9 719 48.8
Lalb_Chr13g0302861 Lupinus albus HOM05D003672 ORTHO05D004121 1.1e-151 541.2 708 50.8
Glyma.05G021000 Glycine max HOM05D003672 ORTHO05D004121 1.8e-141 507.3 705 49.2
Lalb_Chr07g0178301 Lupinus albus HOM05D003672 ORTHO05D004121 7.8e-129 465.3 679 46.7
Atru.chr9.577 Acer truncatum HOM05D003672 ORTHO05D004121 9.6e-119 431.8 691 43.3
Lj4g0018287 Lotus japonicus HOM05D003672 ORTHO05D004121 1.3e-115 421.4 682 45.3
Thecc.03G101900 Theobroma cacao HOM05D003672 ORTHO05D004121 2.2e-115 420.6 714 41.9
Ciclev10019089m.g Citrus clementina HOM05D003672 ORTHO05D004121 9.3e-114 415.2 715 41.4
Prupe.5G205200 Prunus persica HOM05D003672 ORTHO05D004121 1.6e-113 414.5 721 41.1
Potri.015G057600 Populus trichocarpa HOM05D003672 ORTHO05D004121 1.5e-111 407.9 707 41.4
CANSAT80G1081 Cannabis sativa HOM05D003672 ORTHO05D004121 3.1e-109 400.2 721 39.5
QL10p019524 Quercus lobata HOM05D003672 ORTHO05D004121 1.2e-108 398.3 719 41.4
Dinv22781 Davidia involucrata HOM05D003672 ORTHO05D004121 7.6e-108 395.6 719 39.2
Phvul.003G184800 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 3.8e-107 393.3 495 50.9
FvH4_5g13830 Fragaria vesca HOM05D003672 ORTHO05D004121 1.9e-106 391.0 745 39.2
FAN18G3332 Fragaria x ananassa HOM05D003672 ORTHO05D004121 7.1e-106 389.0 745 39.2
Duzib084G0362 Durio zibethinus HOM05D003672 ORTHO05D004121 6.7e-104 382.5 704 39.8
FAN13G1740 Fragaria x ananassa HOM05D003672 ORTHO05D004121 1.9e-103 380.9 745 38.1
COL.COLO4_06856 Corchorus olitorius HOM05D003672 ORTHO05D004121 6.9e-101 372.5 720 38.6
Cfa019341 Carpinus fangiana HOM05D003672 ORTHO05D004121 1.2e-100 371.7 709 40.9
FAN08G3423 Fragaria x ananassa HOM05D003672 ORTHO05D004121 2.2e-99 367.5 766 37.5
Sabra15G0083600 Salix brachista HOM05D003672 ORTHO05D004121 2.2e-99 367.5 712 38.2
Duzib205G1655 Durio zibethinus HOM05D003672 ORTHO05D004121 1.1e-98 365.2 719 38.9
RcHm_v2.0_Chr7g0183101 Rosa chinensis HOM05D003672 ORTHO05D004121 7.4e-95 352.4 708 38.1
Cpa.g.sc94.57 Carica papaya HOM05D003672 ORTHO05D004121 1.6e-94 351.3 712 39.5
Actinidia18990 Actinidia chinensis HOM05D003672 ORTHO05D004121 6.3e-94 349.4 705 38.0
TAR629G1848 Trochodendron aralioides HOM05D003672 ORTHO05D004121 6.3e-94 349.4 728 37.5
MD14G1212000 Malus domestica HOM05D003672 ORTHO05D004121 1.1e-93 348.6 615 41.3
TWI60G1197 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 9.0e-93 345.5 712 38.1
Manes.14G085800 Manihot esculenta HOM05D003672 ORTHO05D004121 1.2e-92 345.1 715 38.6
Haze_07732 Corylus avellana HOM05D003672 ORTHO05D004121 2.0e-92 344.4 827 36.3
Actinidia35037 Actinidia chinensis HOM05D003672 ORTHO05D004121 3.4e-92 343.6 694 38.0
Nn4g23428 Nelumbo nucifera HOM05D003672 ORTHO05D004121 5.9e-92 342.8 727 36.3
Manes.06G084700 Manihot esculenta HOM05D003672 ORTHO05D004121 7.6e-92 342.4 685 39.0
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 1.4e-88 331.6 707 36.6
Gohir.A07G068500 Gossypium hirsutum HOM05D003672 ORTHO05D004121 8.8e-88 328.9 695 38.4
Gorai.001G077200 Gossypium raimondii HOM05D003672 ORTHO05D004121 1.1e-87 328.6 695 38.6
Peaxi162Scf00201g00329 Petunia axillaris HOM05D003672 ORTHO05D004121 3.3e-87 327.0 683 37.3
Sed0002350 Sechium edule HOM05D003672 ORTHO05D004121 3.3e-87 327.0 705 39.1
Gohir.D07G073000 Gossypium hirsutum HOM05D003672 ORTHO05D004121 4.3e-87 326.6 703 37.8
Nitab4.5_0009401g0050 Nicotiana tabacum HOM05D003672 ORTHO05D004121 1.3e-86 325.1 689 37.4
Nitab4.5_0001485g0140 Nicotiana tabacum HOM05D003672 ORTHO05D004121 1.8e-85 321.2 690 37.7
ClCG06G015630 Citrullus lanatus HOM05D003672 ORTHO05D004121 2.4e-85 320.9 721 36.6
MELO3C017225.2 Cucumis melo HOM05D003672 ORTHO05D004121 5.3e-85 319.7 755 35.4
Nn3g17451 Nelumbo nucifera HOM05D003672 ORTHO05D004121 2.0e-84 317.8 740 36.6
TAR629G0952 Trochodendron aralioides HOM05D003672 ORTHO05D004121 3.4e-84 317.0 648 38.6
Dinv34068 Davidia involucrata HOM05D003672 ORTHO05D004121 1.3e-83 315.1 721 37.9
Hma1.2p1_0060F.1_g033090 Hydrangea macrophylla HOM05D003672 ORTHO05D004121 2.9e-83 313.9 718 35.4
CiPaw.12G008500 Carya illinoinensis HOM05D003672 ORTHO05D004121 3.8e-83 313.5 711 36.7
Sopen03g034170 Solanum pennellii HOM05D003672 ORTHO05D004121 5.0e-83 313.2 687 35.2
VMungo1215G2632 Vigna mungo HOM05D003672 ORTHO05D004121 8.5e-83 312.4 447 47.0
Solyc03g115100.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 2.5e-82 310.8 694 35.4
CsaV3_1G002930 Cucumis sativus L. HOM05D003672 ORTHO05D004121 9.4e-82 308.9 713 35.9
Rhsim12G0148200 Rhododendron simsii HOM05D003672 ORTHO05D004121 3.6e-81 307.0 705 36.7
Oeu044870.1 Olea europaea HOM05D003672 ORTHO05D004121 2.3e-80 304.3 695 36.4
GSVIVG01007866001 Vitis vinifera HOM05D003672 ORTHO05D004121 3.0e-80 303.9 715 34.5
Eucgr.B00592 Eucalyptus grandis HOM05D003672 ORTHO05D004121 3.3e-79 300.4 723 36.1
Dinv17414 Davidia involucrata HOM05D003672 ORTHO05D004121 5.7e-79 299.7 692 36.4
Lj5C102T25 Lonicera japonica HOM05D003672 ORTHO05D004121 2.2e-78 297.7 689 36.3
Oeu061164.2 Olea europaea HOM05D003672 ORTHO05D004121 1.8e-77 294.7 711 34.2
TWI15G0151 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 1.2e-76 292.0 716 35.5
PGR083G2392 Punica granatum HOM05D003672 ORTHO05D004121 2.0e-76 291.2 682 36.5
TWI81G0716 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 2.6e-76 290.8 719 35.2
CiPaw.11G053900 Carya illinoinensis HOM05D003672 ORTHO05D004121 5.9e-76 289.7 530 41.1
Cc00_g14840 Coffea canephora HOM05D003672 ORTHO05D004121 5.9e-76 289.7 700 35.6
Gorai.008G199200 Gossypium raimondii HOM05D003672 ORTHO05D004121 5.9e-76 289.7 709 34.8
Gohir.A12G182700 Gossypium hirsutum HOM05D003672 ORTHO05D004121 1.0e-75 288.9 711 34.5
MBI16_g38067_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 8.0e-73 279.3 733 32.3
PGSC0003DMG400024637 Solanum tuberosum HOM05D003672 ORTHO05D004121 5.2e-72 276.6 686 33.1
DCAR_023172 Daucus carota HOM05D003672 ORTHO05D004121 8.8e-72 275.8 714 32.8
Hund02585 Selenicereus undatus HOM05D003672 ORTHO05D004121 3.7e-70 270.4 697 33.4
PSO478G1233 Papaver somniferum HOM05D003672 ORTHO05D004121 4.8e-70 270.0 647 34.5
PSO017G3206 Papaver somniferum HOM05D003672 ORTHO05D004121 7.0e-69 266.2 635 34.2
Gohir.D12G185800 Gossypium hirsutum HOM05D003672 ORTHO05D004121 1.2e-68 265.4 599 35.9
MSTRG.22965 Avicennia marina HOM05D003672 ORTHO05D004121 1.7e-67 261.5 698 32.7
THA.LOC104819401 Tarenaya hassleriana HOM05D003672 ORTHO05D004121 2.2e-67 261.2 708 33.1
GSVIVG01012221001 Vitis vinifera HOM05D003672 ORTHO05D004121 3.2e-66 257.3 690 33.0
Migut.D01656 Erythranthe guttata HOM05D003672 ORTHO05D004121 1.2e-65 255.4 692 33.1
vmacro16495 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 1.2e-65 255.4 713 33.5
Aqoxy1G00151 Aquilegia oxysepala HOM05D003672 ORTHO05D004121 6.7e-64 249.6 694 32.0
SalBow7G3172 Salvia bowleyana HOM05D003672 ORTHO05D004121 4.8e-62 243.4 703 33.1
Ah.02g114040 Amaranthus hybridus HOM05D003672 ORTHO05D004121 1.1e-61 242.3 682 32.6
EL10Ac5g11131 Beta vulgaris HOM05D003672 ORTHO05D004121 2.4e-61 241.1 678 33.8
AUR62008531 Chenopodium quinoa HOM05D003672 ORTHO05D004121 9.1e-61 239.2 690 32.8
AUR62021559 Chenopodium quinoa HOM05D003672 ORTHO05D004121 2.5e-58 231.1 707 32.0
Carub.0008s2173 Capsella rubella HOM05D003672 ORTHO05D004121 1.2e-57 228.8 703 29.3
Hund09914 Selenicereus undatus HOM05D003672 ORTHO05D004121 3.0e-56 224.2 697 32.9
AL8G37700 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 5.2e-56 223.4 700 30.9
AT5G61040 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 6.8e-56 223.0 698 30.2
Actinidia31938 Actinidia chinensis HOM05D003672 ORTHO05D004121 4.4e-55 220.3 683 32.4
Thhalv10003875m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 1.1e-53 215.7 701 29.1
SGA_v2.0_scaffold25G10960 Striga asiatica HOM05D003672 ORTHO05D004121 7.0e-53 213.0 693 30.3
CSS0037619 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D004121 2.0e-52 211.5 688 31.5
Sp2g24340 Schrenkiella parvula HOM05D003672 ORTHO05D004121 8.6e-51 206.1 699 29.9
BraA03t13796Z Brassica rapa HOM05D003672 ORTHO05D004121 3.3e-50 204.1 707 27.9
HanXRQChr09g0270231 Helianthus annuus HOM05D003672 ORTHO05D004121 3.3e-50 204.1 484 35.1
Rhsim12G0075200 Rhododendron simsii HOM05D003672 ORTHO05D004121 2.8e-49 201.1 780 30.0
Aa31LG3G18520 Aethionema arabicum HOM05D003672 ORTHO05D004121 1.4e-48 198.7 627 30.5
CAN.G3169.1 Capsicum annuum HOM05D002946 ORTHO05D003299 4.0e-48 197.2 388 37.9
BcaC06g33181 Brassica carinata HOM05D003672 ORTHO05D004121 1.5e-47 195.3 691 27.4
QL03p074101 Quercus lobata HOM05D003672 ORTHO05D004121 2.6e-47 194.5 516 33.1
AL6G18360 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 9.8e-47 192.6 593 29.8
Ah.11g047770 Amaranthus hybridus HOM05D003672 ORTHO05D004121 2.2e-46 191.4 735 28.3
AT5G08010 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 2.8e-46 191.0 593 30.4
ECA232G2426 Erigeron canadensis HOM05D003672 ORTHO05D004121 2.8e-46 191.0 666 30.6
Rhsim12G0074700 Rhododendron simsii HOM05D003672 ORTHO05D004121 6.3e-46 189.9 779 29.1
HanXRQChr16g0502451 Helianthus annuus HOM05D003672 ORTHO05D004121 8.3e-46 189.5 667 30.0
Carub.0006s0690 Capsella rubella HOM05D003672 ORTHO05D004121 1.1e-45 189.1 541 32.0
CAN.G1228.24 Capsicum annuum HOM05D003672 ORTHO05D004121 1.1e-45 189.1 358 38.5
C07p44780 Brassica napus HOM05D003672 ORTHO05D004121 2.7e-44 184.5 690 26.8
Zm00001eb029540 Zea mays HOM05D003672 ORTHO05D004121 3.5e-44 184.1 534 31.6
CARHR274750 Cardamine hirsuta HOM05D003672 ORTHO05D004121 2.3e-43 181.4 690 27.5
A03p46740 Brassica napus HOM05D003672 ORTHO05D004121 1.1e-42 179.1 707 27.7
Os12g0576300 Oryza sativa ssp. japonica HOM05D003672 ORTHO05D004121 1.1e-42 179.1 526 29.8
Thhalv10013089m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 1.9e-42 178.3 539 30.1
BolC7t45002H Brassica oleracea HOM05D003672 ORTHO05D004121 9.5e-42 176.0 692 25.7
VMungo1215G3071 Vigna mungo HOM05D003672 ORTHO05D004121 1.2e-41 175.6 246 47.2
A10p28610 Brassica napus HOM05D003672 ORTHO05D004121 3.1e-40 171.0 581 28.7
Lj5A435T21 Lonicera japonica HOM05D003672 ORTHO05D004121 3.1e-40 171.0 687 27.9
Lsat_1_v5_gn_4_111040 Lactuca sativa HOM05D003672 ORTHO05D004121 6.8e-40 169.9 673 28.5
ATR0177G058 Amborella trichopoda HOM05D003672 ORTHO05D004121 7.5e-39 166.4 416 35.1
C09p68900 Brassica napus HOM05D003672 ORTHO05D004121 9.8e-39 166.0 575 28.5
BraA10t44910Z Brassica rapa HOM05D003672 ORTHO05D004121 1.3e-38 165.6 584 28.8
Haze_11907 Corylus avellana HOM05D003672 ORTHO05D004121 8.3e-38 162.9 514 31.5
Zm00001eb136280 Zea mays HOM05D003672 ORTHO05D004121 1.1e-37 162.5 394 33.5
BolC9t59636H Brassica oleracea HOM05D003672 ORTHO05D004121 2.4e-37 161.4 575 28.2
vmacro01315 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 9.2e-37 159.5 716 28.9
BcaB08g37298 Brassica carinata HOM05D003672 ORTHO05D004121 2.7e-36 157.9 391 31.2
HPP92_007830 Vanilla planifolia HOM05D003672 ORTHO05D004121 4.6e-36 157.1 424 31.6
CAN.G1228.26 Capsicum annuum HOM05D003672 ORTHO05D004121 2.3e-35 154.8 454 33.7
QL03p074186 Quercus lobata HOM05D003672 ORTHO05D004121 5.0e-35 153.7 501 30.7
CARHR205170 Cardamine hirsuta HOM05D003672 ORTHO05D004121 8.6e-35 152.9 600 27.8
Sed0025785 Sechium edule HOM05D003672 ORTHO05D004121 4.3e-34 150.6 538 29.9
Sp6g34930 Schrenkiella parvula HOM05D003672 ORTHO05D004121 1.4e-32 145.6 601 25.8
CiPaw.05G125000 Carya illinoinensis HOM05D003672 ORTHO05D004121 8.9e-32 142.9 510 28.8
CANSAT39G0004 Cannabis sativa HOM05D003672 ORTHO05D004121 2.0e-31 141.7 225 41.3
MELO3C002028.2 Cucumis melo HOM05D003672 ORTHO05D004121 5.8e-31 140.2 532 29.5
CsaV3_1G005970 Cucumis sativus L. HOM05D003672 ORTHO05D004121 1.3e-30 139.0 526 29.7
PGR102G2240 Punica granatum HOM05D003672 ORTHO05D004121 4.9e-30 137.1 543 27.4
MBI16_g36263_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 1.1e-29 136.0 549 27.9
Aa31LG11G2260 Aethionema arabicum HOM05D003672 ORTHO05D004121 1.4e-29 135.6 380 32.6
Potri.008G096100 Populus trichocarpa HOM05D003672 ORTHO05D004121 2.4e-29 134.8 354 35.9
Sc12g0007260 Simmondsia chinensis HOM05D003672 ORTHO05D004121 4.6e-28 130.6 469 31.1
Atru.chr11.1624 Acer truncatum HOM05D003672 ORTHO05D004121 3.0e-27 127.9 256 39.1
Eucgr.B03149 Eucalyptus grandis HOM05D003672 ORTHO05D004121 1.1e-26 125.9 568 28.0
Sabra08G0072400 Salix brachista HOM05D003672 ORTHO05D004121 1.9e-26 125.2 264 38.6
ClCG04G011810 Citrullus lanatus HOM05D003672 ORTHO05D004121 3.3e-26 124.4 538 27.1
BcaB08g37300 Brassica carinata HOM05D003672 ORTHO05D004121 3.6e-25 120.9 252 36.1
Cc11_g11950 Coffea canephora HOM05D003672 ORTHO05D004121 4.0e-24 117.5 571 28.7
unitig_749.g13432 Utricularia gibba HOM05D003672 ORTHO05D004121 3.4e-23 114.4 375 29.9
HPP92_000460 Vanilla planifolia HOM05D003672 ORTHO05D004121 4.4e-23 114.0 394 29.7
Peaxi162Scf00175g00022 Petunia axillaris HOM05D003672 ORTHO05D004121 1.3e-22 112.5 317 30.6
CDE07G1307 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 4.9e-22 110.5 497 27.0
Nitab4.5_0000231g0260 Nicotiana tabacum HOM05D003672 ORTHO05D004121 4.9e-22 110.5 227 37.4
Solyc05g012230.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 4.9e-22 110.5 227 35.7
CDE04G0191 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 6.4e-22 110.2 284 34.2
SalBow2G2767 Salvia bowleyana HOM05D003672 ORTHO05D004121 1.9e-21 108.6 437 29.3
Nitab4.5_0009585g0010 Nicotiana tabacum HOM05D003672 ORTHO05D004121 3.9e-19 100.9 211 37.4
PGSC0003DMG400028369 Solanum tuberosum HOM05D003672 ORTHO05D004121 7.3e-18 96.7 316 29.7
Sopen05g007060 Solanum pennellii HOM05D003672 ORTHO05D004121 1.2e-17 95.9 310 28.1
Manes.01G028000 Manihot esculenta HOM05D003672 ORTHO05D004121 1.6e-17 95.5 529 27.2
SEGI_10408 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 3.6e-17 94.4 573 25.8
Lsat_1_v5_gn_8_46340 Lactuca sativa HOM05D003672 ORTHO05D004121 2.4e-16 91.7 227 33.5
SEGI_35614 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 3.1e-16 91.3 559 25.4
Migut.L01189 Erythranthe guttata HOM05D003672 ORTHO05D004121 1.3e-14 85.9 355 28.7
Oeu004585.2 Olea europaea HOM05D003672 ORTHO05D004121 6.4e-14 83.6 542 25.8
Ciclev10033781m.g Citrus clementina HOM05D003672 ORTHO05D004121 6.0e-12 77.0 239 32.6
ECA233G1662 Erigeron canadensis HOM05D000677 ORTHO05D000727 6.6e-11 73.6 237 30.8
Gohir.D06G103600 Gossypium hirsutum HOM05D005497 ORTHO05D006733 4.0e-08 64.3 208 29.3
AagrBONN_evm.TU.Sc2ySwM_228.3362 Anthoceros agrestis HOM05D018912 ORTHO05D021275 2.9e-06 58.2 240 26.2
Gorai.010G118600 Gossypium raimondii HOM05D005497 ORTHO05D006733 2.9e-06 58.2 209 28.7
Gohir.A06G101600 Gossypium hirsutum HOM05D005497 ORTHO05D006733 8.4e-06 56.6 209 28.7


User provided reference genes

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