Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 1.1e-170 603.2 298 100.0
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 1.4e-149 533.1 299 88.6
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 8.9e-149 530.4 298 88.3
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 2.2e-147 525.8 299 87.6
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 2.1e-142 509.2 299 85.6
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 1.1e-130 470.3 299 79.3
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 2.4e-130 469.2 299 78.9
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 2.7e-129 465.7 298 78.9
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 1.3e-123 446.8 301 74.4
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 1.3e-123 446.8 299 74.9
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 1.7e-123 446.4 297 75.4
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 2.2e-123 446.0 297 75.1
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 3.9e-120 435.3 298 73.5
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 6.2e-118 427.9 296 73.0
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 5.8e-116 421.4 296 70.3
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 4.2e-114 415.2 296 70.9
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 4.6e-113 411.8 296 70.3
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 6.6e-112 407.9 302 68.5
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 6.6e-112 407.9 296 68.6
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 8.7e-112 407.5 296 69.3
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 1.5e-111 406.8 298 68.8
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 2.5e-111 406.0 296 69.9
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 2.5e-111 406.0 296 69.9
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 2.5e-111 406.0 273 74.0
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 4.3e-111 405.2 233 83.7
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 4.3e-111 405.2 297 68.0
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 4.3e-111 405.2 304 70.4
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 5.6e-111 404.8 300 68.3
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 1.6e-110 403.3 298 69.1
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 2.8e-110 402.5 296 67.6
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 4.8e-110 401.7 296 68.6
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 1.8e-109 399.8 251 76.5
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 1.8e-109 399.8 233 82.4
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 1.8e-109 399.8 296 68.6
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 6.9e-109 397.9 298 66.4
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 6.9e-109 397.9 299 67.6
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.5e-108 396.7 300 68.0
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 1.5e-108 396.7 246 77.2
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 2.0e-108 396.4 296 65.9
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 3.4e-108 395.6 296 68.2
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 4.4e-108 395.2 300 66.0
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 4.4e-108 395.2 300 66.7
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 2.2e-107 392.9 301 66.1
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 2.2e-107 392.9 256 74.6
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 3.8e-107 392.1 300 67.3
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 3.8e-107 392.1 297 66.3
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 3.8e-107 392.1 256 74.6
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 4.9e-107 391.7 301 66.1
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 6.4e-107 391.3 296 67.9
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 6.4e-107 391.3 288 67.0
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 6.4e-107 391.3 245 75.9
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 6.4e-107 391.3 245 75.5
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 8.4e-107 391.0 296 67.9
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 8.4e-107 391.0 300 67.0
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 8.4e-107 391.0 299 67.2
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 1.1e-106 390.6 296 66.6
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 1.1e-106 390.6 286 69.2
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 1.4e-106 390.2 296 67.2
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 1.4e-106 390.2 323 62.8
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 1.9e-106 389.8 301 66.4
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 1.9e-106 389.8 301 66.4
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 1.9e-106 389.8 301 66.4
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 1.9e-106 389.8 298 65.8
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 2.4e-106 389.4 253 72.7
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 3.2e-106 389.0 302 67.2
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 4.2e-106 388.7 296 66.9
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 4.2e-106 388.7 256 74.2
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 5.4e-106 388.3 302 64.9
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 7.1e-106 387.9 301 65.8
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 1.2e-105 387.1 253 73.1
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 1.2e-105 387.1 233 79.8
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 2.1e-105 386.3 302 63.9
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 2.7e-105 386.0 299 65.2
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 3.5e-105 385.6 288 67.4
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 4.6e-105 385.2 301 65.4
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 4.6e-105 385.2 233 80.3
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 4.6e-105 385.2 251 74.1
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 4.6e-105 385.2 303 66.3
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 6.0e-105 384.8 242 76.4
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 1.3e-104 383.6 298 65.4
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 1.7e-104 383.3 300 64.3
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 1.7e-104 383.3 253 71.9
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 5.1e-104 381.7 239 76.6
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 6.6e-104 381.3 280 67.1
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 6.6e-104 381.3 256 74.6
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 8.7e-104 380.9 233 78.5
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 8.7e-104 380.9 233 79.4
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 1.9e-103 379.8 270 72.2
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 1.9e-103 379.8 296 65.9
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 7.4e-103 377.9 226 80.1
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 2.1e-102 376.3 261 70.1
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 3.1e-101 372.5 366 55.5
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 9.0e-101 370.9 224 79.0
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 1.5e-100 370.2 266 69.2
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 2.0e-100 369.8 281 66.2
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 5.8e-100 368.2 255 70.2
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.7e-99 366.7 285 65.6
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 1.7e-99 366.7 223 78.5
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 2.3e-96 356.3 219 78.5
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 2.3e-96 356.3 226 76.5
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 3.0e-96 355.9 253 68.4
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 5.1e-96 355.1 255 68.6
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 2.5e-95 352.8 352 56.2
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 3.3e-95 352.4 246 69.9
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 1.3e-94 350.5 223 75.3
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 2.8e-94 349.4 253 68.4
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 3.1e-93 345.9 285 62.5
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 7.6e-92 341.3 201 82.1
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 8.4e-91 337.8 251 64.5
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 7.1e-90 334.7 226 70.8
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 4.6e-89 332.0 258 65.1
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 3.9e-88 328.9 296 60.1
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 1.1e-87 327.4 302 58.9
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 1.3e-86 323.9 226 69.5
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 2.4e-85 319.7 253 64.0
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 9.0e-85 317.8 271 62.0
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 1.2e-84 317.4 268 62.7
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 4.5e-84 315.5 223 65.9
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 9.3e-82 307.8 213 70.9
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 3.9e-80 302.4 190 76.3
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 4.3e-79 298.9 219 65.8
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 9.7e-79 297.7 188 75.5
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 3.1e-77 292.7 237 64.1
CDE07G0155 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 2.4e-69 266.5 231 55.4
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 3.8e-67 259.2 230 56.5
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 1.6e-65 253.8 216 56.0
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 6.3e-62 241.9 289 48.4
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 7.0e-61 238.4 220 50.9
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 7.0e-61 238.4 220 50.9
SGA_v2.0_scaffold3G01460 Striga asiatica HOM05D004985 ORTHO05D005912 8.5e-59 231.5 140 77.9
Lj7A653T48 Lonicera japonica HOM05D004985 ORTHO05D005912 2.5e-58 229.9 140 79.3
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 2.5e-58 229.9 425 36.7
Nitab4.5_0002968g0050 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.8e-53 213.8 132 77.3
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.9e-50 203.8 254 42.5
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 3.6e-49 199.5 247 42.9
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 3.6e-49 199.5 234 43.6
HPP92_012184 Vanilla planifolia HOM05D004985 ORTHO05D005912 6.1e-49 198.7 185 56.8
EL10Ac1g02367 Beta vulgaris HOM05D004985 ORTHO05D005912 2.1e-41 173.7 138 64.5
HPP92_012182 Vanilla planifolia HOM05D004985 ORTHO05D005912 2.1e-41 173.7 110 74.5
Haze_07724 Corylus avellana HOM05D004985 ORTHO05D005912 4.4e-39 166.0 119 63.9
SGA_v2.0_scaffold1066G53824 Striga asiatica HOM05D004985 ORTHO05D005912 8.3e-38 161.8 123 62.6
Gohir.A07G164340 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.2e-36 157.9 97 81.4
Gohir.A06G085600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 2.5e-34 150.2 97 79.4
CBR_g37694 Chara braunii HOM05D004985 ORTHO05D005912 3.6e-33 146.4 109 61.5
SEGI_10948 Sequoiadendron giganteum HOM05D004985 ORTHO05D005912 4.4e-31 139.4 141 54.6
SalBow5G1356 Salvia bowleyana HOM05D004985 ORTHO05D005912 8.0e-25 118.6 101 63.4
Oeu014405.1 Olea europaea HOM05D004985 ORTHO05D005912 8.9e-24 115.2 92 66.3
Peaxi162Scf00086g01110 Petunia axillaris HOM05D004985 ORTHO05D005912 1.5e-23 114.4 160 46.9
Haze_15308 Corylus avellana HOM05D004985 ORTHO05D005912 1.0e-19 101.7 67 73.1
Cfa004103 Carpinus fangiana HOM05D004985 ORTHO05D005912 8.6e-19 98.6 59 81.4
SHI27080 Sapria himalayana HOM05D004985 ORTHO05D005912 8.9e-16 88.6 95 50.5
Cfa024059 Carpinus fangiana HOM05D004985 ORTHO05D005912 8.9e-08 62.0 176 33.0


User provided reference genes

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