Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 2.4e-81 305.4 156 100.0
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 7.6e-67 257.3 156 84.6
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 3.5e-56 221.9 126 88.9
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 2.6e-51 205.7 155 70.3
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 2.3e-47 192.6 156 67.3
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 2.0e-43 179.5 154 61.7
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 2.1e-40 169.5 157 59.9
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 1.0e-39 167.2 143 60.8
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 2.2e-34 149.4 149 55.0
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 1.1e-33 147.1 141 53.2
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 4.2e-33 145.2 156 50.6
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 2.1e-32 142.9 151 55.0
arahy.Tifrunner.gnm1.ann1.Q570SP Arachis hypogaea HOM05D003565 ORTHO05D003943 6.1e-32 141.4 155 52.3
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 1.8e-31 139.8 157 51.6
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 3.0e-31 139.0 152 50.0
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 2.0e-30 136.3 145 49.7
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 5.7e-30 134.8 149 51.7
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 7.4e-30 134.4 153 47.7
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 9.7e-30 134.0 156 50.6
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 6.3e-29 131.3 145 51.0
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 8.2e-29 131.0 152 46.1
arahy.Tifrunner.gnm1.ann1.VE1P60 Arachis hypogaea HOM05D003565 ORTHO05D003943 1.4e-28 130.2 95 68.4
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 1.8e-28 129.8 156 49.4
CSS0008161 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 5.3e-28 128.3 150 50.0
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 5.3e-28 128.3 150 48.0
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 6.9e-28 127.9 159 46.5
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 9.1e-28 127.5 156 50.0
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 1.2e-27 127.1 148 48.0
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.6e-27 125.9 148 48.6
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 3.4e-27 125.6 147 46.3
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 2.9e-26 122.5 154 46.1
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 3.8e-26 122.1 164 43.3
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 1.4e-25 120.2 153 48.4
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 2.5e-25 119.4 154 44.2
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 5.5e-25 118.2 146 47.9
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 7.2e-25 117.9 158 46.8
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 9.4e-25 117.5 151 47.7
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 1.2e-24 117.1 153 47.1
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 2.1e-24 116.3 153 47.1
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 2.7e-24 115.9 152 42.8
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 2.7e-24 115.9 155 47.1
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 2.7e-24 115.9 152 43.4
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 4.7e-24 115.2 148 45.9
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 6.1e-24 114.8 162 43.2
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 6.1e-24 114.8 162 43.2
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 1.0e-23 114.0 156 42.3
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 1.0e-23 114.0 159 42.8
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 1.8e-23 113.2 144 43.8
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 2.3e-23 112.8 143 48.3
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 3.9e-23 112.1 153 45.1
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 8.8e-23 110.9 149 45.0
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 2.0e-22 109.8 149 44.3
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 3.3e-22 109.0 149 46.3
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 4.4e-22 108.6 153 43.1
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 9.7e-22 107.5 149 44.3
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 1.3e-21 107.1 153 41.8
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.7e-21 106.7 150 40.7
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 2.2e-21 106.3 150 40.7
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.2e-21 106.3 149 39.6
CSS0017850 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 3.7e-21 105.5 149 43.6
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 3.7e-21 105.5 151 41.7
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 6.3e-21 104.8 150 40.0
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 6.3e-21 104.8 130 44.6
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 8.2e-21 104.4 134 44.8
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 1.1e-20 104.0 129 46.5
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 1.1e-20 104.0 151 47.0
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 1.4e-20 103.6 134 44.8
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 2.4e-20 102.8 154 40.3
Ciclev10006885m.g Citrus clementina HOM05D003565 ORTHO05D003943 4.1e-20 102.1 146 43.2
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 4.1e-20 102.1 158 43.7
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 7.0e-20 101.3 155 42.6
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 7.0e-20 101.3 155 42.6
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 9.1e-20 100.9 154 42.2
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.2e-19 100.5 158 42.4
Ciclev10006409m.g Citrus clementina HOM05D003565 ORTHO05D003943 1.5e-19 100.1 149 40.9
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 1.0e-18 97.4 131 43.5
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.2e-18 96.3 158 41.1
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 2.2e-18 96.3 153 40.5
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 2.9e-18 95.9 144 44.4
ATR0796G036 Amborella trichopoda HOM05D003565 ORTHO05D003943 6.5e-18 94.7 149 40.9
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 6.5e-18 94.7 150 42.0
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 6.5e-18 94.7 155 36.8
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 1.4e-17 93.6 125 42.4
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.5e-17 92.8 145 39.3
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 4.2e-17 92.0 133 40.6
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.2e-16 90.5 153 39.9
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 1.2e-16 90.5 152 35.5
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 2.1e-16 89.7 154 37.7
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 2.7e-16 89.4 121 43.0
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 8.0e-16 87.8 129 40.3
QL06p009834 Quercus lobata HOM05D003565 ORTHO05D003943 1.0e-15 87.4 155 36.1
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 3.0e-15 85.9 155 36.1
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 6.7e-15 84.7 153 37.9
CiPaw.02G059300 Carya illinoinensis HOM05D003565 ORTHO05D003943 8.8e-15 84.3 136 42.6
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 8.8e-15 84.3 102 45.1
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 1.1e-14 84.0 162 35.2
QL06p009817 Quercus lobata HOM05D003565 ORTHO05D003943 1.1e-14 84.0 154 37.7
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 1.5e-14 83.6 120 39.2
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 2.0e-14 83.2 136 38.2
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 2.6e-14 82.8 133 37.6
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 2.6e-14 82.8 134 39.6
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 2.6e-14 82.8 106 44.3
CsaV3_3G014770 Cucumis sativus L. HOM05D003565 ORTHO05D003943 4.4e-14 82.0 154 37.7
FAN12G2280 Fragaria x ananassa HOM05D003565 ORTHO05D003943 4.4e-14 82.0 155 34.8
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 5.7e-14 81.6 105 47.6
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 5.7e-14 81.6 118 39.8
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 5.7e-14 81.6 102 42.2
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 5.7e-14 81.6 102 44.1
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 5.7e-14 81.6 102 44.1
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 5.7e-14 81.6 102 44.1
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 5.7e-14 81.6 102 44.1
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 5.7e-14 81.6 102 44.1
DCAR_027061 Daucus carota HOM05D003565 ORTHO05D003943 1.3e-13 80.5 142 39.4
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 1.7e-13 80.1 102 43.1
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 2.8e-13 79.3 155 36.1
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 3.7e-13 79.0 147 38.1
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.7e-13 79.0 113 41.6
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 4.8e-13 78.6 143 38.5
Os07g0674400 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 4.8e-13 78.6 141 35.5
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 6.3e-13 78.2 140 40.0
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 8.2e-13 77.8 102 43.1
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 8.2e-13 77.8 102 43.1
Eucgr.H03941 Eucalyptus grandis HOM05D003565 ORTHO05D003943 1.4e-12 77.0 159 38.4
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 1.8e-12 76.6 151 35.1
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 1.8e-12 76.6 135 40.0
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 2.4e-12 76.3 102 43.1
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 3.1e-12 75.9 145 37.9
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 3.1e-12 75.9 143 38.5
Nitab4.5_0003949g0040 Nicotiana tabacum HOM05D003565 ORTHO05D003943 4.1e-12 75.5 148 36.5
HanXRQChr03g0089401 Helianthus annuus HOM05D003565 ORTHO05D003943 5.3e-12 75.1 142 36.6
FAN17G0998 Fragaria x ananassa HOM05D003565 ORTHO05D003943 7.0e-12 74.7 155 35.5
Nitab4.5_0003949g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 7.0e-12 74.7 148 36.5
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 7.0e-12 74.7 102 42.2
Zm00001eb111390 Zea mays HOM05D003565 ORTHO05D003943 9.1e-12 74.3 122 38.5
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.2e-11 73.9 140 40.0
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 1.6e-11 73.6 124 36.3
QL06p009884 Quercus lobata HOM05D003565 ORTHO05D003943 1.6e-11 73.6 119 35.3
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 2.0e-11 73.2 154 30.5
RcHm_v2.0_Chr4g0422901 Rosa chinensis HOM05D003565 ORTHO05D003943 2.0e-11 73.2 160 31.9
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.6e-11 72.8 149 34.9
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 5.9e-11 71.6 146 34.2
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 7.7e-11 71.2 154 29.9
HanXRQChr08g0214531 Helianthus annuus HOM05D003565 ORTHO05D003943 7.7e-11 71.2 140 35.7
HanXRQChr03g0089391 Helianthus annuus HOM05D003565 ORTHO05D003943 8.5e-10 67.8 121 38.0
HanXRQChr05g0130321 Helianthus annuus HOM05D003565 ORTHO05D003943 8.5e-10 67.8 150 35.3
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 8.5e-10 67.8 123 39.8
HanXRQChr01g0002181 Helianthus annuus HOM05D003565 ORTHO05D003943 1.5e-09 67.0 145 33.8
DCAR_030517 Daucus carota HOM05D003565 ORTHO05D003943 1.9e-09 66.6 122 34.4
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 2.5e-09 66.2 140 36.4
Oeu026321.1 Olea europaea HOM05D003565 ORTHO05D003943 2.5e-09 66.2 141 35.5
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 3.2e-09 65.9 151 31.1
Nitab4.5_0000930g0010 Nicotiana tabacum HOM05D003565 ORTHO05D003943 9.4e-09 64.3 145 33.1
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.2e-08 63.9 156 34.6
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.6e-08 63.5 156 34.6
Nitab4.5_0000493g0090 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.1e-08 63.2 92 39.1
Os03g0341600 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 2.1e-08 63.2 122 33.6
Zm00001eb016410 Zea mays HOM05D003565 ORTHO05D003943 2.1e-08 63.2 159 37.1
Os07g0674500 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 4.7e-08 62.0 134 33.6
SGA_v2.0_scaffold177G39437 Striga asiatica HOM05D003565 ORTHO05D003943 4.7e-08 62.0 134 32.1
QL06p009891 Quercus lobata HOM05D003565 ORTHO05D003943 8.0e-08 61.2 119 32.8
Nitab4.5_0000493g0080 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.0e-07 60.8 145 35.9
C01p47670 Brassica napus HOM05D003565 ORTHO05D003943 3.0e-07 59.3 158 32.9
CiPaw.02G059100 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.0e-07 59.3 108 42.6
A01p37640 Brassica napus HOM05D003565 ORTHO05D003943 6.7e-07 58.2 122 35.2
BolC1t04739H Brassica oleracea HOM05D003565 ORTHO05D003943 6.7e-07 58.2 122 35.2
BraA01t03825Z Brassica rapa HOM05D003565 ORTHO05D003943 6.7e-07 58.2 122 35.2
QL06p009948 Quercus lobata HOM05D003565 ORTHO05D003943 6.7e-07 58.2 145 28.3
Migut.N02472 Erythranthe guttata HOM05D003565 ORTHO05D003943 8.8e-07 57.8 141 28.4
Thhalv10021613m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 8.8e-07 57.8 117 36.8
ECA247G1649 Erigeron canadensis HOM05D023078 ORTHO05D003943 5.7e-06 55.1 155 32.9
Os03g0342100 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 7.5e-06 54.7 93 33.3
CsaV3_3G014760 Cucumis sativus L. HOM05D003565 ORTHO05D003943 9.7e-06 54.3 116 30.2
DCAR_022430 Daucus carota HOM05D003565 ORTHO05D003943 9.7e-06 54.3 160 31.2


User provided reference genes

Program Settings