Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g435850 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 2140.2 1067 100.0
Medtr2g436170 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 2140.2 1067 100.0
Medtr5g020160 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1958.3 1063 90.6
Ca_10630_v3 Cicer arietinum L. HOM05D005069 ORTHO05D006024 0.0e+00 1929.8 1063 88.9
TPR.G14183 Trifolium pratense HOM05D005069 ORTHO05D006024 0.0e+00 1924.4 1063 88.6
Psat1g155720 Pisum sativum HOM05D005069 ORTHO05D006024 0.0e+00 1884.4 1062 86.7
Phvul.009G250200 Phaseolus vulgaris HOM05D005069 ORTHO05D006024 0.0e+00 1723.4 1013 82.2
Glyma.09G042600 Glycine max HOM05D005069 ORTHO05D006024 0.0e+00 1719.1 1014 82.3
Lj6g0024094 Lotus japonicus HOM05D005069 ORTHO05D006024 0.0e+00 1718.0 1013 82.7
VMungo1309G0850 Vigna mungo HOM05D005069 ORTHO05D006024 0.0e+00 1695.6 1013 80.8
arahy.Tifrunner.gnm1.ann1.9CA2Y1 Arachis hypogaea HOM05D005069 ORTHO05D006024 0.0e+00 1552.3 1018 74.8
Glyma.15G192400 Glycine max HOM05D005069 ORTHO05D006024 0.0e+00 1538.5 911 82.2
arahy.Tifrunner.gnm1.ann1.I5RJVP Arachis hypogaea HOM05D005069 ORTHO05D006024 0.0e+00 1536.9 1018 74.3
QL06p010168 Quercus lobata HOM05D005069 ORTHO05D006024 0.0e+00 1416.0 1063 65.4
CiPaw.02G080300 Carya illinoinensis HOM05D005069 ORTHO05D006024 0.0e+00 1400.2 1065 65.5
Cfa015421 Carpinus fangiana HOM05D005069 ORTHO05D006024 0.0e+00 1398.3 1061 64.8
Prupe.1G132400 Prunus persica HOM05D005069 ORTHO05D006024 0.0e+00 1327.8 1063 62.6
RcHm_v2.0_Chr4g0423171 Rosa chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1313.9 1061 62.1
Duzib151G0715 Durio zibethinus HOM05D005069 ORTHO05D006024 0.0e+00 1284.2 1055 60.9
Haze_01171 Corylus avellana HOM05D005069 ORTHO05D006024 0.0e+00 1280.0 1096 59.9
GSVIVG01035118001 Vitis vinifera HOM05D005069 ORTHO05D006024 0.0e+00 1279.6 1070 60.7
FAN12G2768 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1278.1 1072 60.4
FAN07G0695 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1277.7 1010 63.5
Atru.chr4.2893 Acer truncatum HOM05D005069 ORTHO05D006024 0.0e+00 1273.5 1073 59.7
Sabra07G0100800 Salix brachista HOM05D005069 ORTHO05D006024 0.0e+00 1260.4 1068 58.6
Actinidia40297 Actinidia chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1251.9 1065 60.0
Ciclev10007186m.g Citrus clementina HOM05D005069 ORTHO05D006024 0.0e+00 1246.5 1086 59.0
Potri.007G124900 Populus trichocarpa HOM05D005069 ORTHO05D006024 0.0e+00 1237.6 1070 57.9
TWI09G0094 Tripterygium wilfordii HOM05D005069 ORTHO05D006024 0.0e+00 1231.5 1070 59.6
Lj6C680G7 Lonicera japonica HOM05D005069 ORTHO05D006024 0.0e+00 1217.2 1091 57.8
Cpa.g.sc50.170 Carica papaya HOM05D005069 ORTHO05D006024 0.0e+00 1209.9 1015 59.3
Eucgr.H03956 Eucalyptus grandis HOM05D005069 ORTHO05D006024 0.0e+00 1208.7 1067 57.7
Gorai.005G061500 Gossypium raimondii HOM05D005069 ORTHO05D006024 0.0e+00 1203.0 1013 58.1
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1202.2 998 60.7
Gohir.A02G050600 Gossypium hirsutum HOM05D005069 ORTHO05D006024 0.0e+00 1201.4 1015 58.0
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 0.0e+00 1198.0 1016 59.6
Lalb_Chr15g0086031 Lupinus albus HOM05D005069 ORTHO05D006024 0.0e+00 1196.0 761 78.4
Rhsim04G0224900 Rhododendron simsii HOM05D005069 ORTHO05D006024 0.0e+00 1195.3 1100 56.0
PGR004G1871 Punica granatum HOM05D005069 ORTHO05D006024 0.0e+00 1184.5 1068 56.3
FAN17G1646 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1182.2 1027 59.7
Aqoxy2G02916 Aquilegia oxysepala HOM05D005069 ORTHO05D006024 0.0e+00 1178.3 1068 55.1
Manes.04G040225 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1166.0 1065 55.7
THA.LOC104818914 Tarenaya hassleriana HOM05D005069 ORTHO05D006024 0.0e+00 1149.8 1014 56.5
AT5G49150 Arabidopsis thaliana HOM05D005069 ORTHO05D006024 0.0e+00 1147.5 1060 55.1
AL8G22670 Arabidopsis lyrata HOM05D005069 ORTHO05D006024 0.0e+00 1146.0 1062 54.8
Nitab4.5_0000695g0020 Nicotiana tabacum HOM05D005069 ORTHO05D006024 0.0e+00 1139.8 1066 54.0
Carub.0008s0895 Capsella rubella HOM05D005069 ORTHO05D006024 0.0e+00 1132.5 1011 55.9
CAN.G1639.1 Capsicum annuum HOM05D005069 ORTHO05D006024 0.0e+00 1132.1 1063 54.5
vmacro08181 Vaccinium macrocarpon HOM05D005069 ORTHO05D006024 0.0e+00 1129.8 1110 53.0
Peaxi162Scf00065g01432 Petunia axillaris HOM05D005069 ORTHO05D006024 0.0e+00 1123.6 1071 53.8
Nitab4.5_0006814g0030 Nicotiana tabacum HOM05D005069 ORTHO05D006024 0.0e+00 1120.5 1100 52.3
Manes.04G045344 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1114.8 1069 53.6
BraA02t08774Z Brassica rapa HOM05D005069 ORTHO05D006024 0.0e+00 1109.0 1030 54.6
Manes.04G046272 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1102.0 1011 55.4
A02p37900 Brassica napus HOM05D005069 ORTHO05D006024 0.0e+00 1099.0 1022 54.9
PSO170G2573 Papaver somniferum HOM05D005069 ORTHO05D006024 0.0e+00 1096.3 1015 54.1
BcaC03g17701 Brassica carinata HOM05D005069 ORTHO05D006024 0.0e+00 1094.3 1027 53.7
BolC2t11776H Brassica oleracea HOM05D005069 ORTHO05D006024 0.0e+00 1094.3 1027 53.7
Thhalv10005444m.g Eutrema salsugineum HOM05D005069 ORTHO05D006024 0.0e+00 1093.2 977 55.5
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 1092.0 1029 53.5
Aa31LG11G8390 Aethionema arabicum HOM05D005069 ORTHO05D006024 0.0e+00 1088.9 1020 53.4
Solyc01g066510.3 Solanum lycopersicum HOM05D005069 ORTHO05D006024 0.0e+00 1086.2 1082 51.3
PSO407G0255 Papaver somniferum HOM05D005069 ORTHO05D006024 0.0e+00 1077.0 1071 53.0
Manes.04G046000 Manihot esculenta HOM05D005069 ORTHO05D006024 7.3e-312 1073.5 1076 52.2
Cc03_g01590 Coffea canephora HOM05D005069 ORTHO05D006024 1.5e-311 1072.8 936 56.3
AUR62018094 Chenopodium quinoa HOM05D005069 ORTHO05D006024 1.6e-309 1066.2 1008 52.4
Migut.G00133 Erythranthe guttata HOM05D005069 ORTHO05D006024 1.6e-309 1066.2 1009 54.0
AUR62032020 Chenopodium quinoa HOM05D005069 ORTHO05D006024 1.5e-307 1059.7 1052 50.8
Dinv29734 Davidia involucrata HOM05D005069 ORTHO05D006024 7.5e-307 1057.4 843 63.5
DCAR_023295 Daucus carota HOM05D005069 ORTHO05D006024 7.0e-305 1050.8 1078 50.9
SGA_v2.0_scaffold67G22603 Striga asiatica HOM05D005069 ORTHO05D006024 1.7e-298 1029.6 1010 52.4
CARHR186440 Cardamine hirsuta HOM05D005069 ORTHO05D006024 2.7e-296 1022.3 900 56.2
EL10Ac3g06634 Beta vulgaris HOM05D005069 ORTHO05D006024 1.7e-295 1019.6 976 51.5
SalBow2G1933 Salvia bowleyana HOM05D005069 ORTHO05D006024 1.1e-294 1016.9 1010 51.5
CANSAT78G0554 Cannabis sativa HOM05D005069 ORTHO05D006024 1.6e-293 1013.1 774 63.7
Sp2g19500 Schrenkiella parvula HOM05D005069 ORTHO05D006024 2.2e-290 1002.7 918 54.4
FvH4_4g18570 Fragaria vesca HOM05D005069 ORTHO05D006024 6.3e-290 1001.1 837 61.3
Ah.00g238040 Amaranthus hybridus HOM05D005069 ORTHO05D006024 1.4e-284 983.4 1020 49.5
Nn3g21533 Nelumbo nucifera HOM05D005069 ORTHO05D006024 1.1e-281 973.8 846 59.8
CSS0043552 Camellia sinensis var. sinensis HOM05D005069 ORTHO05D006024 2.0e-275 953.0 921 55.0
Hund20526 Selenicereus undatus HOM05D005069 ORTHO05D006024 5.4e-273 944.9 1059 46.9
HPP92_022450 Vanilla planifolia HOM05D005069 ORTHO05D006024 6.2e-269 931.4 1011 48.2
Lsat_1_v5_gn_6_96300 Lactuca sativa HOM05D005069 ORTHO05D006024 3.2e-265 919.1 1020 47.0
ATR0580G217 Amborella trichopoda HOM05D005069 ORTHO05D006024 2.6e-259 899.4 1074 46.5
MBI15_g07480_MAGBIO Magnolia biondii HOM05D005069 ORTHO05D006024 6.0e-248 861.7 1078 45.6
Migut.G00081 Erythranthe guttata HOM05D005069 ORTHO05D006024 2.6e-243 846.3 911 48.7
TAR636G0683 Trochodendron aralioides HOM05D005069 ORTHO05D006024 1.9e-241 840.1 692 60.7
HanXRQChr03g0089541 Helianthus annuus HOM05D005069 ORTHO05D006024 6.9e-228 795.0 994 42.6
Oeu035688.1 Olea europaea HOM05D005069 ORTHO05D006024 7.6e-227 791.6 733 55.9
Zm00001eb099800 Zea mays HOM05D005069 ORTHO05D006024 3.2e-217 759.6 1027 40.8
Sopen01g028200 Solanum pennellii HOM05D005069 ORTHO05D006024 2.3e-215 753.4 722 52.5
Manes.04G046718 Manihot esculenta HOM05D005069 ORTHO05D006024 1.7e-213 747.3 627 58.2
Hma1.2p1_0078F.1_g040620 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.4e-212 743.4 552 65.0
Sc13g0003270 Simmondsia chinensis HOM05D005069 ORTHO05D006024 1.7e-205 720.7 637 55.3
ECA240G4151 Erigeron canadensis HOM05D005069 ORTHO05D006024 2.7e-200 703.4 1027 40.0
CDE02G3967 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 6.1e-176 622.5 647 50.1
Thecc.04G288100 Theobroma cacao HOM05D005069 ORTHO05D006024 1.3e-157 561.6 475 59.8
HanXRQChr03g0089561 Helianthus annuus HOM05D005069 ORTHO05D006024 6.2e-152 542.7 578 47.4
TAR636G0082 Trochodendron aralioides HOM05D005069 ORTHO05D006024 2.1e-123 448.0 363 62.0
Thecc.04G288200 Theobroma cacao HOM05D005069 ORTHO05D006024 2.7e-123 447.6 370 58.9
SHI26096 Sapria himalayana HOM05D005069 ORTHO05D006024 1.0e-106 392.5 385 51.7
TPR.G29612 Trifolium pratense HOM05D005069 ORTHO05D006024 4.5e-102 377.1 208 87.5
Sc13g0003280 Simmondsia chinensis HOM05D005069 ORTHO05D006024 9.7e-97 359.4 325 54.2
SMO174G0176 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 1.2e-83 315.8 1034 26.5
Gohir.D02G055533 Gossypium hirsutum HOM05D005069 ORTHO05D006024 5.2e-82 310.5 218 66.1
Lalb_Chr15g0086041 Lupinus albus HOM05D005069 ORTHO05D006024 2.8e-80 304.7 172 83.1
Manes.04G046727 Manihot esculenta HOM05D005069 ORTHO05D006024 2.0e-78 298.5 220 64.1
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 1.9e-68 265.4 223 57.4
HanXRQChr03g0089551 Helianthus annuus HOM05D005069 ORTHO05D006024 2.0e-65 255.4 339 42.2
Sabra07G0101000 Salix brachista HOM05D005069 ORTHO05D006024 1.5e-57 229.2 231 49.4
Hma1.2p1_1659F.1_g296120 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 3.2e-55 221.5 179 62.0
Hma1.2p1_0139F.1_g063315 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.9e-52 212.2 179 59.8
Hma1.2p1_0139F.1_g063320 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 4.3e-52 211.1 179 60.3
Gohir.D02G055566 Gossypium hirsutum HOM05D005069 ORTHO05D006024 1.5e-49 202.6 158 60.1
AagrBONN_evm.TU.Sc2ySwM_340.311 Anthoceros agrestis HOM05D005069 ORTHO05D006024 9.8e-49 199.9 918 24.1
SHI34756 Sapria himalayana HOM05D005069 ORTHO05D006024 2.3e-45 188.7 338 33.7
SHI26092 Sapria himalayana HOM05D005069 ORTHO05D006024 1.4e-42 179.5 130 63.8
Lalb_Chr15g0086021 Lupinus albus HOM05D005069 ORTHO05D006024 4.9e-40 171.0 102 77.5
Os09g0424701 Oryza sativa ssp. japonica HOM05D005069 ORTHO05D006024 8.3e-40 170.2 206 40.3
CDE02G3730 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 1.9e-36 159.1 115 60.0
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 9.5e-36 156.8 130 54.6
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 6.8e-34 150.6 134 53.7
TPR.G9115 Trifolium pratense HOM05D005069 ORTHO05D006024 6.8e-34 150.6 84 84.5
SHI26089 Sapria himalayana HOM05D005069 ORTHO05D006024 5.8e-33 147.5 126 57.9
TPR.G8658 Trifolium pratense HOM05D005069 ORTHO05D006024 1.4e-31 142.9 302 35.4
Lsat_1_v5_gn_8_152101 Lactuca sativa HOM05D005069 ORTHO05D006024 2.1e-30 139.0 154 44.8
AagrBONN_evm.TU.Sc2ySwM_228.988 Anthoceros agrestis HOM05D005069 ORTHO05D006024 3.5e-30 138.3 1038 22.0
Mapoly0125s0024 Marchantia polymorpha HOM05D005069 ORTHO05D006024 1.3e-29 136.3 527 22.2
SMO347G0277 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 1.1e-26 126.7 566 23.0
Hma1.2p1_0078F.1_g040610 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 5.4e-23 114.4 102 57.8
BcaC03g17698 Brassica carinata HOM05D005069 ORTHO05D006024 3.3e-20 105.1 107 46.7
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 3.6e-19 101.7 93 48.4
Lsat_1_v5_gn_2_33340 Lactuca sativa HOM05D005069 ORTHO05D006024 4.0e-18 98.2 82 50.0
SMO109G0005 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 1.5e-17 96.3 295 25.4
SMO111G0104 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 5.8e-17 94.4 546 22.9
AagrBONN_evm.TU.Sc2ySwM_344.2936 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.9e-15 89.4 948 19.8
BcaC06g30714 Brassica carinata HOM05D005069 ORTHO05D006024 9.3e-15 87.0 92 43.5
AagrBONN_evm.TU.Sc2ySwM_340.310 Anthoceros agrestis HOM05D005069 ORTHO05D006024 2.7e-14 85.5 311 23.2
Mapoly0125s0023 Marchantia polymorpha HOM05D005069 ORTHO05D006024 7.9e-14 84.0 376 23.7
BcaC05g26383 Brassica carinata HOM05D005069 ORTHO05D006024 1.0e-13 83.6 58 62.1
C05p24130 Brassica napus HOM05D005069 ORTHO05D006024 3.0e-13 82.0 58 60.3
CARHR286020 Cardamine hirsuta HOM05D005069 ORTHO05D006024 2.8e-11 75.5 100 42.0
CARHR285990 Cardamine hirsuta HOM05D005069 ORTHO05D006024 2.4e-10 72.4 57 54.4
AagrBONN_evm.TU.Sc2ySwM_340.307 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.2e-09 70.1 224 23.7


User provided reference genes

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