Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g435810 Medicago truncatula HOM05D005099 ORTHO05D006087 1.4e-99 366.3 184 100.0
Medtr2g436150 Medicago truncatula HOM05D005099 ORTHO05D006087 1.4e-99 366.3 184 100.0
VMungo1309G2116 Vigna mungo HOM05D005099 ORTHO05D006087 4.9e-73 278.1 187 74.9
Glyma.09G042500 Glycine max HOM05D005099 ORTHO05D006087 1.6e-71 273.1 186 76.3
Phvul.009G250300 Phaseolus vulgaris HOM05D005099 ORTHO05D006087 3.0e-70 268.9 187 75.9
Glyma.15G150400 Glycine max HOM05D005099 ORTHO05D006087 8.6e-70 267.3 188 73.4
Psat1g155760 Pisum sativum HOM05D005099 ORTHO05D006087 8.1e-68 260.8 192 76.6
Haze_01169 Corylus avellana HOM05D005099 ORTHO05D006087 1.8e-67 259.6 185 73.5
Ciclev10006010m.g Citrus clementina HOM05D005099 ORTHO05D006087 3.4e-66 255.4 187 72.2
Thecc.04G288600 Theobroma cacao HOM05D005099 ORTHO05D006087 9.9e-66 253.8 193 71.5
Sabra08G0151700 Salix brachista HOM05D005099 ORTHO05D006087 2.4e-64 249.2 190 68.4
Atru.chr4.2896 Acer truncatum HOM05D005099 ORTHO05D006087 3.2e-64 248.8 192 71.4
ClCG06G004980 Citrullus lanatus HOM05D005099 ORTHO05D006087 4.2e-64 248.4 185 69.2
Duzib151G0929 Durio zibethinus HOM05D005099 ORTHO05D006087 4.2e-64 248.4 194 68.0
Cfa015424 Carpinus fangiana HOM05D005099 ORTHO05D006087 7.1e-64 247.7 189 68.8
Potri.008G219500 Populus trichocarpa HOM05D005099 ORTHO05D006087 2.1e-63 246.1 191 68.1
CANSAT78G2455 Cannabis sativa HOM05D005099 ORTHO05D006087 6.0e-63 244.6 198 67.2
Manes.15G010800 Manihot esculenta HOM05D005099 ORTHO05D006087 6.0e-63 244.6 184 67.9
CsaV3_6G023860 Cucumis sativus L. HOM05D005099 ORTHO05D006087 2.3e-62 242.7 190 67.4
arahy.Tifrunner.gnm1.ann1.2UKM1V Arachis hypogaea HOM05D005099 ORTHO05D006087 3.9e-62 241.9 191 69.6
Duzib212G0134 Durio zibethinus HOM05D005099 ORTHO05D006087 5.1e-62 241.5 189 68.3
Hma1.2p1_0804F.1_g221070 Hydrangea macrophylla HOM05D005099 ORTHO05D006087 5.1e-62 241.5 189 66.7
arahy.Tifrunner.gnm1.ann1.2F59RJ Arachis hypogaea HOM05D005099 ORTHO05D006087 1.1e-61 240.4 191 69.1
MELO3C021313.2 Cucumis melo HOM05D005099 ORTHO05D006087 1.1e-61 240.4 189 68.8
CiPaw.01G145600 Carya illinoinensis HOM05D005099 ORTHO05D006087 1.9e-61 239.6 192 70.8
Lj6g0002623 Lotus japonicus HOM05D005099 ORTHO05D006087 4.3e-61 238.4 184 70.1
COL.COLO4_13826 Corchorus olitorius HOM05D005099 ORTHO05D006087 4.8e-60 235.0 194 68.0
QL06p010333 Quercus lobata HOM05D005099 ORTHO05D006087 3.1e-59 232.3 197 66.0
TAR362G0212 Trochodendron aralioides HOM05D005099 ORTHO05D006087 1.5e-58 229.9 184 62.5
Manes.03G198300 Manihot esculenta HOM05D005099 ORTHO05D006087 7.6e-58 227.6 186 62.4
TWI73G1062 Tripterygium wilfordii HOM05D005099 ORTHO05D006087 7.6e-58 227.6 198 63.1
Dinv44353 Davidia involucrata HOM05D005099 ORTHO05D006087 9.9e-58 227.3 196 64.3
Sed0019517 Sechium edule HOM05D005099 ORTHO05D006087 1.1e-56 223.8 186 62.9
CiPaw.02G080200 Carya illinoinensis HOM05D005099 ORTHO05D006087 2.4e-56 222.6 191 64.4
Prupe.1G124100 Prunus persica HOM05D005099 ORTHO05D006087 9.3e-56 220.7 184 66.3
MD16G1164800 Malus domestica HOM05D005099 ORTHO05D006087 1.6e-55 219.9 186 65.1
Potri.010G010600 Populus trichocarpa HOM05D005099 ORTHO05D006087 2.1e-55 219.5 191 64.9
Lalb_Chr20g0117371 Lupinus albus HOM05D005099 ORTHO05D006087 7.9e-55 217.6 188 66.0
TAR365G0602 Trochodendron aralioides HOM05D005099 ORTHO05D006087 1.7e-54 216.5 198 60.6
FvH4_4g18620 Fragaria vesca HOM05D005099 ORTHO05D006087 8.7e-54 214.2 187 64.7
FAN12G1484 Fragaria x ananassa HOM05D005099 ORTHO05D006087 8.7e-54 214.2 187 64.7
FAN12G1671 Fragaria x ananassa HOM05D005099 ORTHO05D006087 8.7e-54 214.2 187 64.7
RcHm_v2.0_Chr4g0423321 Rosa chinensis HOM05D005099 ORTHO05D006087 1.3e-52 210.3 190 63.2
CSS0011820 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 3.6e-52 208.8 189 59.8
Rhsim02G0007200 Rhododendron simsii HOM05D005099 ORTHO05D006087 4.8e-52 208.4 186 60.2
Sabra10G0006200 Salix brachista HOM05D005099 ORTHO05D006087 6.2e-52 208.0 190 60.0
Cc03_g01550 Coffea canephora HOM05D005099 ORTHO05D006087 1.8e-51 206.5 191 60.7
Nn3g21536 Nelumbo nucifera HOM05D005099 ORTHO05D006087 2.4e-51 206.1 185 61.1
Actinidia14282 Actinidia chinensis HOM05D005099 ORTHO05D006087 3.1e-51 205.7 188 60.1
CAN.G14.36 Capsicum annuum HOM05D005099 ORTHO05D006087 1.5e-50 203.4 194 58.2
Dinv29728 Davidia involucrata HOM05D005099 ORTHO05D006087 1.5e-50 203.4 188 61.7
Oeu006417.1 Olea europaea HOM05D005099 ORTHO05D006087 4.5e-50 201.8 188 63.8
FAN07G0877 Fragaria x ananassa HOM05D005099 ORTHO05D006087 7.6e-50 201.1 186 61.3
Peaxi162Scf00065g00138 Petunia axillaris HOM05D005099 ORTHO05D006087 7.6e-50 201.1 200 58.0
Sopen01g028090 Solanum pennellii HOM05D005099 ORTHO05D006087 9.9e-50 200.7 187 62.0
FAN17G2615 Fragaria x ananassa HOM05D005099 ORTHO05D006087 1.3e-49 200.3 186 61.8
vmacro15214 Vaccinium macrocarpon HOM05D005099 ORTHO05D006087 1.3e-49 200.3 166 63.9
THA.LOC104827334 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 2.2e-49 199.5 194 60.3
CARHR081450 Cardamine hirsuta HOM05D005099 ORTHO05D006087 6.4e-49 198.0 192 60.4
Nitab4.5_0000695g0110 Nicotiana tabacum HOM05D005099 ORTHO05D006087 5.4e-48 194.9 193 58.0
Nn4g25764 Nelumbo nucifera HOM05D005099 ORTHO05D006087 1.2e-47 193.7 186 60.2
Gorai.005G061600 Gossypium raimondii HOM05D005099 ORTHO05D006087 2.7e-47 192.6 186 56.5
Solyc01g066440.3 Solanum lycopersicum HOM05D005099 ORTHO05D006087 6.0e-47 191.4 187 60.4
Gohir.D02G055600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 7.9e-47 191.0 186 55.9
Gohir.A02G050700 Gossypium hirsutum HOM05D005099 ORTHO05D006087 1.3e-46 190.3 186 55.9
Nitab4.5_0003767g0020 Nicotiana tabacum HOM05D005099 ORTHO05D006087 1.3e-46 190.3 193 57.0
Aqoxy2G02900 Aquilegia oxysepala HOM05D005099 ORTHO05D006087 1.1e-45 187.2 187 57.2
MD13G1165200 Malus domestica HOM05D005099 ORTHO05D006087 1.5e-45 186.8 190 57.9
PGSC0003DMG400011309 Solanum tuberosum HOM05D005099 ORTHO05D006087 1.9e-45 186.4 187 59.9
Oeu033813.1 Olea europaea HOM05D005099 ORTHO05D006087 3.3e-45 185.7 190 58.9
AT3G06840 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 1.6e-44 183.3 190 57.4
AL3G17960 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 2.1e-44 183.0 190 56.8
Thhalv10004959m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 4.8e-44 181.8 205 57.1
Gohir.A09G237600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 6.2e-44 181.4 206 56.3
arahy.Tifrunner.gnm1.ann1.H54SCY Arachis hypogaea HOM05D005099 ORTHO05D006087 1.1e-43 180.6 190 57.4
CSS0049831 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 1.8e-43 179.9 188 58.0
THA.LOC104818909 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 4.0e-43 178.7 210 54.3
arahy.Tifrunner.gnm1.ann1.L8YWMY Arachis hypogaea HOM05D005099 ORTHO05D006087 5.3e-43 178.3 190 56.8
PSO407G0003 Papaver somniferum HOM05D005099 ORTHO05D006087 3.4e-42 175.6 204 50.5
Gohir.D09G238500 Gossypium hirsutum HOM05D005099 ORTHO05D006087 4.5e-42 175.3 195 58.5
EL10Ac3g06640 Beta vulgaris HOM05D005099 ORTHO05D006087 5.8e-42 174.9 189 54.5
Hund24882 Selenicereus undatus HOM05D005099 ORTHO05D006087 2.9e-41 172.6 195 52.3
MSTRG.3894 Avicennia marina HOM05D005099 ORTHO05D006087 1.1e-40 170.6 186 54.3
Eucgr.H03959 Eucalyptus grandis HOM05D005099 ORTHO05D006087 1.1e-40 170.6 214 48.6
Sc13g0003250 Simmondsia chinensis HOM05D005099 ORTHO05D006087 1.1e-40 170.6 187 51.3
AUR62015274 Chenopodium quinoa HOM05D005099 ORTHO05D006087 1.4e-40 170.2 187 53.5
SalBow2G2334 Salvia bowleyana HOM05D005099 ORTHO05D006087 1.4e-40 170.2 185 56.8
PGR004G0666 Punica granatum HOM05D005099 ORTHO05D006087 1.9e-40 169.9 197 55.8
Aa31LG5G17420 Aethionema arabicum HOM05D005099 ORTHO05D006087 2.5e-40 169.5 189 54.5
AUR62018071 Chenopodium quinoa HOM05D005099 ORTHO05D006087 2.5e-40 169.5 187 54.0
Carub.0003s0637 Capsella rubella HOM05D005099 ORTHO05D006087 3.2e-40 169.1 193 56.0
Sed0015120 Sechium edule HOM05D005099 ORTHO05D006087 4.2e-40 168.7 185 51.9
Cpa.g.sc50.167 Carica papaya HOM05D005099 ORTHO05D006087 5.5e-40 168.3 123 67.5
HanXRQChr17g0536041 Helianthus annuus HOM05D005099 ORTHO05D006087 5.5e-40 168.3 189 53.4
Sp3g05800 Schrenkiella parvula HOM05D005099 ORTHO05D006087 7.1e-40 167.9 194 57.2
Oeu053996.1 Olea europaea HOM05D005099 ORTHO05D006087 3.5e-39 165.6 188 54.3
Ah.13g074810 Amaranthus hybridus HOM05D005099 ORTHO05D006087 4.6e-39 165.2 181 53.6
Gorai.006G261200 Gossypium raimondii HOM05D005099 ORTHO05D006087 4.6e-39 165.2 207 54.6
BNapus_Darmor_BZH_scaffold_117p00120 Brassica napus HOM05D005099 ORTHO05D006087 1.3e-38 163.7 191 56.0
BraA01t04411Z Brassica rapa HOM05D005099 ORTHO05D006087 1.3e-38 163.7 191 56.0
Thhalv10021591m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 1.8e-38 163.3 190 56.3
SGA_v2.0_scaffold67G22601 Striga asiatica HOM05D005099 ORTHO05D006087 2.3e-38 162.9 184 54.3
Sp2g19520 Schrenkiella parvula HOM05D005099 ORTHO05D006087 3.0e-38 162.5 199 55.3
CARHR182490 Cardamine hirsuta HOM05D005099 ORTHO05D006087 5.1e-38 161.8 191 53.9
MBI18_g04556_MAGBIO Magnolia biondii HOM05D005099 ORTHO05D006087 8.7e-38 161.0 183 53.0
A02p37910 Brassica napus HOM05D005099 ORTHO05D006087 4.3e-37 158.7 191 54.5
BraA02t08775Z Brassica rapa HOM05D005099 ORTHO05D006087 4.3e-37 158.7 191 53.9
BcaC09g47923 Brassica carinata HOM05D005099 ORTHO05D006087 7.4e-37 157.9 190 54.7
BolC1t05583H Brassica oleracea HOM05D005099 ORTHO05D006087 7.4e-37 157.9 190 54.7
BcaC03g17704 Brassica carinata HOM05D005099 ORTHO05D006087 1.6e-36 156.8 191 53.9
C02p57110 Brassica napus HOM05D005099 ORTHO05D006087 1.6e-36 156.8 191 53.9
BolC2t11783H Brassica oleracea HOM05D005099 ORTHO05D006087 1.6e-36 156.8 191 53.9
AL8G22700 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 2.8e-36 156.0 200 52.0
AT5G49170 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 3.7e-36 155.6 205 51.7
BcaB07g34138 Brassica carinata HOM05D005099 ORTHO05D006087 4.8e-36 155.2 191 52.4
BraA06t26768Z Brassica rapa HOM05D005099 ORTHO05D006087 1.8e-35 153.3 203 55.7
Migut.G00130 Erythranthe guttata HOM05D005099 ORTHO05D006087 1.8e-35 153.3 186 51.1
ECA246G4673 Erigeron canadensis HOM05D005099 ORTHO05D006087 9.0e-35 151.0 202 50.5
SHI00249 Sapria himalayana HOM05D005099 ORTHO05D006087 1.5e-34 150.2 192 49.5
PSO170G0513 Papaver somniferum HOM05D005099 ORTHO05D006087 3.4e-34 149.1 206 47.1
Lsat_1_v5_gn_3_21720 Lactuca sativa HOM05D005099 ORTHO05D006087 4.5e-34 148.7 195 51.3
BcaNung02585 Brassica carinata HOM05D005099 ORTHO05D006087 3.8e-33 145.6 221 50.7
BolC7t44497H Brassica oleracea HOM05D005099 ORTHO05D006087 3.8e-33 145.6 221 50.7
DCAR_002480 Daucus carota HOM05D005099 ORTHO05D006087 5.0e-33 145.2 195 48.7
C07p39730 Brassica napus HOM05D005099 ORTHO05D006087 1.9e-32 143.3 216 50.0
BcaC06g30711 Brassica carinata HOM05D005099 ORTHO05D006087 2.5e-32 142.9 225 48.4
Carub.0008s0899 Capsella rubella HOM05D005099 ORTHO05D006087 2.5e-32 142.9 204 46.6
A06p38540 Brassica napus HOM05D005099 ORTHO05D006087 2.7e-31 139.4 226 49.6
HanXRQChr06g0173741 Helianthus annuus HOM05D005099 ORTHO05D006087 1.3e-28 130.6 188 44.7
MD13G1165100 Malus domestica HOM05D005099 ORTHO05D006087 2.9e-25 119.4 151 54.3
Sc19g0005440 Simmondsia chinensis HOM05D005099 ORTHO05D006087 8.5e-25 117.9 181 44.8
ATR0693G064 Amborella trichopoda HOM05D005099 ORTHO05D006087 1.9e-24 116.7 184 44.0
Nn7g36563 Nelumbo nucifera HOM05D005099 ORTHO05D006087 2.5e-24 116.3 110 55.5
Lalb_Chr15g0086051 Lupinus albus HOM05D005099 ORTHO05D006087 3.2e-24 115.9 91 68.1
DCAR_023299 Daucus carota HOM05D005099 ORTHO05D006087 7.2e-24 114.8 190 40.5
GSVIVG01035110001 Vitis vinifera HOM05D005099 ORTHO05D006087 7.2e-24 114.8 79 79.7
Nitab4.5_0011001g0010 Nicotiana tabacum HOM05D005099 ORTHO05D006087 7.9e-23 111.3 184 39.1
Oeu035687.1 Olea europaea HOM05D005099 ORTHO05D006087 3.9e-22 109.0 198 41.9
HPP92_011860 Vanilla planifolia HOM05D005099 ORTHO05D006087 5.7e-21 105.1 177 41.8
Sopen05g032840 Solanum pennellii HOM05D005099 ORTHO05D006087 7.4e-21 104.8 186 38.7
Nitab4.5_0001097g0130 Nicotiana tabacum HOM05D005099 ORTHO05D006087 2.2e-17 93.2 160 40.0
Lj6P680T81 Lonicera japonica HOM05D005099 ORTHO05D006087 2.9e-17 92.8 64 73.4
BcaC06g30713 Brassica carinata HOM05D005099 ORTHO05D006087 1.6e-15 87.0 82 62.2
MBI19_g32875_MAGBIO Magnolia biondii HOM05D008031 ORTHO05D010063 4.8e-12 75.5 185 34.1
Actinidia00002 Actinidia chinensis HOM05D005099 ORTHO05D006087 7.7e-10 68.2 104 38.5
Actinidia21841 Actinidia chinensis HOM05D008031 ORTHO05D010063 2.9e-09 66.2 184 33.2
Aqoxy7G04192 Aquilegia oxysepala HOM05D008031 ORTHO05D010063 1.9e-08 63.5 185 30.3
CDE02G1545 Ceratophyllum demersum HOM05D006941 ORTHO05D008361 4.2e-08 62.4 155 37.4
Actinidia24421 Actinidia chinensis HOM05D001728 ORTHO05D004321 7.2e-08 61.6 184 31.5
Lalb_Chr10g0101091 Lupinus albus HOM05D008031 ORTHO05D010063 7.2e-08 61.6 185 26.5
Phvul.010G122700 Phaseolus vulgaris HOM05D008031 ORTHO05D010063 1.6e-07 60.5 181 29.3
Glyma.07G046300 Glycine max HOM05D008031 ORTHO05D010063 2.1e-07 60.1 181 29.3
GSVIVG01016662001 Vitis vinifera HOM05D008031 ORTHO05D010063 4.7e-07 58.9 182 29.7
CSS0025062 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004321 6.1e-07 58.5 184 31.0
Nn4g25860 Nelumbo nucifera HOM05D005099 ORTHO05D006087 1.0e-06 57.8 97 42.3
Lj3g0013752 Lotus japonicus HOM05D008031 ORTHO05D010063 1.8e-06 57.0 182 27.5
Thecc.06G130800 Theobroma cacao HOM05D008031 ORTHO05D010063 1.8e-06 57.0 182 29.1
Manes.04G151400 Manihot esculenta HOM05D008031 ORTHO05D010063 2.3e-06 56.6 185 29.2
COL.COLO4_30875 Corchorus olitorius HOM05D008031 ORTHO05D010063 8.8e-06 54.7 185 30.3


User provided reference genes

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