Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g105710 Medicago truncatula HOM05D007396 ORTHO05D009228 3.1e-37 157.9 78 100.0
Psat5g306960 Pisum sativum HOM05D007396 ORTHO05D009228 2.3e-24 115.2 69 84.1
QL03p030511 Quercus lobata HOM05D007396 ORTHO05D009228 2.6e-23 111.7 69 78.3
CiPaw.01G206900 Carya illinoinensis HOM05D007396 ORTHO05D009228 4.4e-23 110.9 69 76.8
Nn8g41117 Nelumbo nucifera HOM05D007396 ORTHO05D009228 5.7e-23 110.5 69 75.4
CANSAT01G2937 Cannabis sativa HOM05D007396 ORTHO05D009228 1.3e-22 109.4 69 75.4
Aa31LG7G1230 Aethionema arabicum HOM05D007396 ORTHO05D009228 1.7e-22 109.0 73 74.0
BraA08t35051Z Brassica rapa HOM05D000163 ORTHO05D000219 1.7e-22 109.0 69 75.4
Ciclev10013937m.g Citrus clementina HOM05D007396 ORTHO05D009228 2.2e-22 108.6 69 72.5
BcaB03g13031 Brassica carinata HOM05D007396 ORTHO05D009228 2.8e-22 108.2 69 75.4
A08p31280 Brassica napus HOM05D000163 ORTHO05D000219 2.8e-22 108.2 69 75.4
PSO063G4472 Papaver somniferum HOM05D007396 ORTHO05D009228 2.8e-22 108.2 69 72.5
Gohir.D03G058600 Gossypium hirsutum HOM05D007396 ORTHO05D009228 3.7e-22 107.8 69 73.9
Gorai.003G062400 Gossypium raimondii HOM05D007396 ORTHO05D009228 3.7e-22 107.8 69 73.9
Thhalv10009697m.g Eutrema salsugineum HOM05D007396 ORTHO05D009228 4.9e-22 107.5 69 73.9
C08p17550 Brassica napus HOM05D000163 ORTHO05D009228 8.3e-22 106.7 69 73.9
Sp1g14920 Schrenkiella parvula HOM05D007396 ORTHO05D009228 8.3e-22 106.7 69 72.5
Carub.0001s1651 Capsella rubella HOM05D007396 ORTHO05D009228 1.1e-21 106.3 69 73.9
COL.COLO4_38280 Corchorus olitorius HOM05D007396 ORTHO05D009228 1.1e-21 106.3 69 73.9
Gohir.A02G117900 Gossypium hirsutum HOM05D007396 ORTHO05D009228 1.1e-21 106.3 69 73.9
Prupe.3G025300 Prunus persica HOM05D007396 ORTHO05D009228 1.1e-21 106.3 69 72.5
Cpa.g.sc176.25 Carica papaya HOM05D007396 ORTHO05D009228 1.4e-21 105.9 69 72.5
PSO170G5362 Papaver somniferum HOM05D007396 ORTHO05D009228 1.4e-21 105.9 69 71.0
vmacro00415 Vaccinium macrocarpon HOM05D007396 ORTHO05D009228 1.8e-21 105.5 69 73.9
BolC8t49381H Brassica oleracea HOM05D000163 ORTHO05D000219 2.4e-21 105.1 69 73.9
CARHR017230 Cardamine hirsuta HOM05D007396 ORTHO05D009228 3.1e-21 104.8 69 73.9
AUR62025704 Chenopodium quinoa HOM05D007396 ORTHO05D009228 3.1e-21 104.8 69 69.6
AL1G28940 Arabidopsis lyrata HOM05D007396 ORTHO05D009228 4.1e-21 104.4 69 71.0
BcaC07g38814 Brassica carinata HOM05D007396 ORTHO05D009228 4.1e-21 104.4 69 72.5
Manes.06G178800 Manihot esculenta HOM05D007396 ORTHO05D009228 5.4e-21 104.0 62 79.0
HPP92_017379 Vanilla planifolia HOM05D007396 ORTHO05D009228 1.6e-20 102.4 69 66.7
THA.LOC104812337 Tarenaya hassleriana HOM05D007396 ORTHO05D009228 2.7e-20 101.7 69 69.6
Eucgr.E02321 Eucalyptus grandis HOM05D007396 ORTHO05D009228 3.5e-20 101.3 69 69.6
Eucgr.E02613 Eucalyptus grandis HOM05D007396 ORTHO05D009228 3.5e-20 101.3 69 69.6
SGA_v2.0_scaffold71G23969 Striga asiatica HOM05D000927 ORTHO05D009228 3.5e-20 101.3 69 66.7
Cfa003427 Carpinus fangiana HOM05D007396 ORTHO05D009228 4.5e-20 100.9 69 69.6
Eucgr.E02934 Eucalyptus grandis HOM05D007396 ORTHO05D009228 5.9e-20 100.5 69 68.1
Eucgr.E02145 Eucalyptus grandis HOM05D007396 ORTHO05D009228 7.7e-20 100.1 69 69.6
Hund05665 Selenicereus undatus HOM05D007396 ORTHO05D009228 7.7e-20 100.1 69 69.6
Eucgr.E02918 Eucalyptus grandis HOM05D007396 ORTHO05D009228 1.0e-19 99.8 69 68.1
MD17G1161100 Malus domestica HOM05D007396 ORTHO05D009228 1.3e-19 99.4 73 65.8
Nitab4.5_0000642g0070 Nicotiana tabacum HOM05D007396 ORTHO05D009228 1.3e-19 99.4 69 66.7
Sc05g0005440 Simmondsia chinensis HOM05D007396 ORTHO05D009228 1.3e-19 99.4 69 66.7
Lsat_1_v5_gn_4_106220 Lactuca sativa HOM05D007396 ORTHO05D009228 2.3e-19 98.6 63 69.8
Eucgr.E02270 Eucalyptus grandis HOM05D007396 ORTHO05D009228 3.8e-19 97.8 62 74.2
Eucgr.E02947 Eucalyptus grandis HOM05D007396 ORTHO05D009228 3.8e-19 97.8 69 66.7
Aqoxy2G02658 Aquilegia oxysepala HOM05D007396 ORTHO05D009228 5.0e-19 97.4 69 65.2
RcHm_v2.0_Chr2g0149061 Rosa chinensis HOM05D007396 ORTHO05D009228 5.0e-19 97.4 71 70.4
GSVIVG01029532001 Vitis vinifera HOM05D007396 ORTHO05D009228 5.0e-19 97.4 69 66.7
FvH4_6g36570 Fragaria vesca HOM05D007396 ORTHO05D009228 6.6e-19 97.1 71 66.2
FAN14G5522 Fragaria x ananassa HOM05D000163 ORTHO05D009228 6.6e-19 97.1 71 66.2
Sed0010526 Sechium edule HOM05D007396 ORTHO05D009228 8.6e-19 96.7 69 63.8
PGSC0003DMG400024566 Solanum tuberosum HOM05D007396 ORTHO05D009228 8.6e-19 96.7 69 62.3
Oeu045511.1 Olea europaea HOM05D007396 ORTHO05D009228 1.9e-18 95.5 75 64.0
Cc02_g09240 Coffea canephora HOM05D007396 ORTHO05D009228 2.5e-18 95.1 69 66.7
Eucgr.E02931 Eucalyptus grandis HOM05D007396 ORTHO05D009228 3.3e-18 94.7 69 65.2
FAN09G0647 Fragaria x ananassa HOM05D007396 ORTHO05D009228 3.3e-18 94.7 71 64.8
CAN.G999.17 Capsicum annuum HOM05D007396 ORTHO05D009228 5.5e-18 94.0 69 59.4
SEGI_29070 Sequoiadendron giganteum HOM05D007396 ORTHO05D009228 5.5e-18 94.0 56 75.0
Sopen03g032560 Solanum pennellii HOM05D007396 ORTHO05D009228 5.5e-18 94.0 69 59.4
ECA233G2395 Erigeron canadensis HOM05D007396 ORTHO05D009228 7.2e-18 93.6 65 66.2
Eucgr.J03193 Eucalyptus grandis HOM05D007396 ORTHO05D009228 7.2e-18 93.6 62 71.0
Solyc03g113510.2 Solanum lycopersicum HOM05D007396 ORTHO05D009228 9.5e-18 93.2 69 59.4
Os02g0140800 Oryza sativa ssp. japonica HOM05D007396 ORTHO05D009228 1.2e-17 92.8 73 60.3
DCAR_005735 Daucus carota HOM05D007396 ORTHO05D009228 1.6e-17 92.4 70 62.9
Eucgr.E02547 Eucalyptus grandis HOM05D007396 ORTHO05D009228 4.7e-17 90.9 69 62.3
Mapoly0001s0056 Marchantia polymorpha HOM05D007396 ORTHO05D009228 4.7e-17 90.9 69 56.5
ClCG07G014720 Citrullus lanatus HOM05D007396 ORTHO05D009228 8.0e-17 90.1 62 67.7
Migut.M00713 Erythranthe guttata HOM05D007396 ORTHO05D009228 1.4e-16 89.4 54 75.9
MELO3C010415.2 Cucumis melo HOM05D007396 ORTHO05D009228 4.0e-16 87.8 69 65.2
Actinidia31121 Actinidia chinensis HOM05D007396 ORTHO05D009228 2.0e-15 85.5 68 60.3
Potri.004G169900 Populus trichocarpa HOM05D007396 ORTHO05D009228 2.6e-15 85.1 68 61.8
AUR62001321 Chenopodium quinoa HOM05D007396 ORTHO05D009228 3.4e-15 84.7 51 74.5
EL10Ac7g18125 Beta vulgaris HOM05D007396 ORTHO05D009228 1.3e-14 82.8 48 79.2
Lj7C720T3 Lonicera japonica HOM05D007396 ORTHO05D009228 1.3e-14 82.8 55 69.1
CsaV3_4G028760 Cucumis sativus L. HOM05D007396 ORTHO05D009228 1.7e-14 82.4 69 60.9
FAN02G1321 Fragaria x ananassa HOM05D000163 ORTHO05D000219 2.2e-14 82.0 55 70.9
Nitab4.5_0005451g0030 Nicotiana tabacum HOM05D007396 ORTHO05D009228 6.3e-14 80.5 53 69.8
Duzib192G0415 Durio zibethinus HOM05D007396 ORTHO05D009228 1.8e-13 79.0 74 56.8
PGR031G2036 Punica granatum HOM05D007396 ORTHO05D009228 5.4e-13 77.4 60 65.0
CSS0031419 Camellia sinensis var. sinensis HOM05D007396 ORTHO05D009228 9.2e-13 76.6 52 73.1
Potri.014G003300 Populus trichocarpa HOM05D007396 ORTHO05D009228 3.9e-11 71.2 68 54.4
CDE06G1120 Ceratophyllum demersum HOM05D007396 ORTHO05D009228 7.3e-10 67.0 45 68.9
HanXRQChr06g0173121 Helianthus annuus HOM05D007396 ORTHO05D009228 4.7e-09 64.3 64 46.9
SEGI_36165 Sequoiadendron giganteum HOM05D007396 ORTHO05D009228 6.2e-09 63.9 40 70.0
Eucgr.E02214 Eucalyptus grandis HOM05D007396 ORTHO05D009228 3.1e-08 61.6 62 58.1
BcaC05g25534 Brassica carinata HOM05D000163 ORTHO05D000219 4.0e-08 61.2 35 82.9
BcaC07g38815 Brassica carinata HOM05D007396 ORTHO05D009228 4.0e-08 61.2 35 82.9
SalBow6G2527 Salvia bowleyana HOM05D007396 ORTHO05D009228 4.0e-08 61.2 55 50.9
Pp3c5_8210 Physcomitrium patens HOM05D007396 ORTHO05D009228 5.2e-08 60.8 69 37.7
SEGI_21917 Sequoiadendron giganteum HOM05D007396 ORTHO05D009228 1.5e-07 59.3 39 69.2
unitig_32.g11080 Utricularia gibba HOM05D007396 ORTHO05D009228 1.7e-06 55.8 39 61.5


User provided reference genes

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