Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g104770 Medicago truncatula HOM05D002011 ORTHO05D001948 5.4e-131 471.1 250 100.0
Psat5g304320 Pisum sativum HOM05D002011 ORTHO05D001948 3.3e-40 169.5 195 62.1
TPR.G19169 Trifolium pratense HOM05D002011 ORTHO05D001948 1.3e-31 141.0 226 49.6
VMungo1080G1625 Vigna mungo HOM05D002011 ORTHO05D001948 6.3e-31 138.7 259 44.8
Phvul.005G181100 Phaseolus vulgaris HOM05D002011 ORTHO05D001948 1.1e-27 127.9 252 43.3
Lalb_Chr22g0350711 Lupinus albus HOM05D002011 ORTHO05D001948 1.2e-26 124.4 221 45.2
Lj3g0008755 Lotus japonicus HOM05D002011 ORTHO05D001948 4.7e-26 122.5 252 40.9
Lalb_Chr24g0395351 Lupinus albus HOM05D002011 ORTHO05D001948 6.1e-26 122.1 236 44.1
Glyma.15G004800 Glycine max HOM05D002011 ORTHO05D001948 1.5e-24 117.5 243 42.4
Glyma.13G369000 Glycine max HOM05D002011 ORTHO05D001948 7.5e-24 115.2 237 41.8
arahy.Tifrunner.gnm1.ann1.H5ECBD Arachis hypogaea HOM05D002011 ORTHO05D001948 5.0e-20 102.4 250 38.4
arahy.Tifrunner.gnm1.ann1.W5XW0C Arachis hypogaea HOM05D002011 ORTHO05D001948 5.0e-20 102.4 250 38.4
Ca_01028_v3 Cicer arietinum L. HOM05D002011 ORTHO05D001948 1.4e-17 94.4 96 58.3
Cpa.g.sc10.124 Carica papaya HOM05D002011 ORTHO05D001948 2.3e-17 93.6 252 34.5
FAN02G4077 Fragaria x ananassa HOM05D002011 ORTHO05D001948 5.2e-17 92.4 243 35.4
FvH4_6g29000 Fragaria vesca HOM05D002011 ORTHO05D001948 1.2e-16 91.3 243 35.4
FAN14G4768 Fragaria x ananassa HOM05D002011 ORTHO05D001948 1.2e-16 91.3 243 35.4
QL05p034085 Quercus lobata HOM05D002011 ORTHO05D001948 1.5e-16 90.9 190 42.6
FAN05G1371 Fragaria x ananassa HOM05D002011 ORTHO05D001948 2.6e-16 90.1 243 35.0
FAN05G4451 Fragaria x ananassa HOM05D002011 ORTHO05D001948 2.6e-16 90.1 243 35.0
MSTRG.22780 Avicennia marina HOM05D002011 ORTHO05D001948 3.4e-16 89.7 271 30.3
Psat7g258520 Pisum sativum HOM05D002011 ORTHO05D001948 4.4e-16 89.4 180 42.2
TPR.G8906 Trifolium pratense HOM05D002011 ORTHO05D001948 1.3e-15 87.8 148 44.6
MD17G1219700 Malus domestica HOM05D002011 ORTHO05D001948 1.7e-15 87.4 267 34.5
CiPaw.01G252000 Carya illinoinensis HOM05D002011 ORTHO05D001948 2.2e-15 87.0 205 39.5
FAN09G3914 Fragaria x ananassa HOM05D002011 ORTHO05D001948 2.8e-15 86.7 243 34.6
SGA_v2.0_scaffold37G14736 Striga asiatica HOM05D002011 ORTHO05D001948 3.7e-15 86.3 219 35.2
Ciclev10026302m.g Citrus clementina HOM05D002011 ORTHO05D001948 1.4e-14 84.3 186 40.9
Sed0008145 Sechium edule HOM05D002011 ORTHO05D001948 1.4e-14 84.3 186 37.6
Cfa001910 Carpinus fangiana HOM05D002011 ORTHO05D001948 2.4e-14 83.6 217 35.9
Dinv23313 Davidia involucrata HOM05D002011 ORTHO05D001948 7.0e-14 82.0 169 38.5
Migut.D01093 Erythranthe guttata HOM05D002011 ORTHO05D001948 9.1e-14 81.6 237 34.2
Lj5C77G14 Lonicera japonica HOM05D002011 ORTHO05D001948 1.6e-13 80.9 237 33.8
Potri.017G053900 Populus trichocarpa HOM05D002011 ORTHO05D001948 1.6e-13 80.9 250 33.6
TAR636G1642 Trochodendron aralioides HOM05D002011 ORTHO05D001948 1.6e-13 80.9 191 40.3
SalBow7G0591 Salvia bowleyana HOM05D002011 ORTHO05D001948 5.9e-13 79.0 180 36.7
Nitab4.5_0005934g0050 Nicotiana tabacum HOM05D002011 ORTHO05D001948 7.7e-13 78.6 183 37.7
Prupe.3G095200 Prunus persica HOM05D002011 ORTHO05D001948 1.0e-12 78.2 263 31.9
CiPaw.02G160500 Carya illinoinensis HOM05D002011 ORTHO05D001948 1.7e-12 77.4 190 37.4
TAR626G1639 Trochodendron aralioides HOM05D002011 ORTHO05D001948 3.8e-12 76.3 176 40.3
Actinidia08950 Actinidia chinensis HOM05D002011 ORTHO05D001948 5.0e-12 75.9 245 33.5
MSTRG.11167 Avicennia marina HOM05D002011 ORTHO05D001948 5.0e-12 75.9 235 32.3
CsaV3_7G032000 Cucumis sativus L. HOM05D002011 ORTHO05D001948 6.5e-12 75.5 146 37.0
Medtr4g009195 Medicago truncatula HOM05D002011 ORTHO05D001948 6.5e-12 75.5 256 31.6
ClCG09G003220 Citrullus lanatus HOM05D002011 ORTHO05D001948 8.6e-12 75.1 143 37.1
HanXRQChr02g0034871 Helianthus annuus HOM05D002011 ORTHO05D001948 8.6e-12 75.1 190 36.3
Peaxi162Scf00332g00224 Petunia axillaris HOM05D002011 ORTHO05D001948 8.6e-12 75.1 251 33.1
CANSAT56G3958 Cannabis sativa HOM05D002011 ORTHO05D001948 1.5e-11 74.3 187 36.4
Ca_25896_v3 Cicer arietinum L. HOM05D002011 ORTHO05D001948 1.5e-11 74.3 279 31.5
MSTRG.9415 Avicennia marina HOM05D002011 ORTHO05D001948 2.5e-11 73.6 215 31.6
MD09G1223300 Malus domestica HOM05D002011 ORTHO05D001948 2.5e-11 73.6 263 31.6
Atru.chr10.2381 Acer truncatum HOM05D002011 ORTHO05D001948 3.2e-11 73.2 196 32.1
Oeu010089.1 Olea europaea HOM05D002011 ORTHO05D001948 3.2e-11 73.2 247 30.4
unitig_60.g25613 Utricularia gibba HOM05D002011 ORTHO05D001948 9.5e-11 71.6 195 36.4
BcaC07g41480 Brassica carinata HOM05D002011 ORTHO05D001948 1.2e-10 71.2 211 34.1
C08p44770 Brassica napus HOM05D002011 ORTHO05D001948 1.2e-10 71.2 211 34.1
Cc04_g04820 Coffea canephora HOM05D002011 ORTHO05D001948 1.2e-10 71.2 193 34.2
Sabra17G0045900 Salix brachista HOM05D002011 ORTHO05D001948 1.2e-10 71.2 228 32.9
BraA07t32012Z Brassica rapa HOM05D002011 ORTHO05D001948 1.6e-10 70.9 196 33.7
MELO3C023456.2 Cucumis melo HOM05D002011 ORTHO05D001948 1.6e-10 70.9 71 54.9
Psat5g303920 Pisum sativum HOM05D002011 ORTHO05D001948 2.1e-10 70.5 63 66.7
Rhsim08G0208500 Rhododendron simsii HOM05D002011 ORTHO05D001948 2.8e-10 70.1 256 32.0
RcHm_v2.0_Chr2g0133521 Rosa chinensis HOM05D002011 ORTHO05D001948 2.8e-10 70.1 245 31.4
A07p45090 Brassica napus HOM05D002011 ORTHO05D001948 3.6e-10 69.7 194 32.5
BolC8t52023H Brassica oleracea HOM05D002011 ORTHO05D001948 3.6e-10 69.7 154 40.3
Rhsim12G0188600 Rhododendron simsii HOM05D002011 ORTHO05D001948 4.7e-10 69.3 189 34.4
Sabra17G0040900 Salix brachista HOM05D002011 ORTHO05D001948 4.7e-10 69.3 250 32.0
TAR383G0822 Trochodendron aralioides HOM05D002011 ORTHO05D001948 4.7e-10 69.3 190 34.7
unitig_0.g358 Utricularia gibba HOM05D002011 ORTHO05D001948 4.7e-10 69.3 216 34.3
Nn8g39727 Nelumbo nucifera HOM05D002011 ORTHO05D001948 8.0e-10 68.6 203 32.5
HanXRQChr09g0274671 Helianthus annuus HOM05D002011 ORTHO05D001948 1.0e-09 68.2 197 35.5
Migut.I00725 Erythranthe guttata HOM05D002011 ORTHO05D001948 1.4e-09 67.8 241 29.0
CSS0035080 Camellia sinensis var. sinensis HOM05D002011 ORTHO05D001948 1.8e-09 67.4 239 33.9
Potri.001G313900 Populus trichocarpa HOM05D002011 ORTHO05D001948 1.8e-09 67.4 259 30.5
AL6G36860 Arabidopsis lyrata HOM05D002011 ORTHO05D001948 2.3e-09 67.0 173 33.5
Ca_29512_v3 Cicer arietinum L. HOM05D002011 ORTHO05D001948 2.3e-09 67.0 314 29.6
C06p53920 Brassica napus HOM05D002011 ORTHO05D001948 3.0e-09 66.6 189 33.3
CSS0010574 Camellia sinensis var. sinensis HOM05D002011 ORTHO05D001948 3.0e-09 66.6 257 30.7
TWI18G0546 Tripterygium wilfordii HOM05D002011 ORTHO05D001948 3.0e-09 66.6 224 31.2
Actinidia18229 Actinidia chinensis HOM05D002011 ORTHO05D001948 4.0e-09 66.2 163 35.6
EL10Ac2g04150 Beta vulgaris HOM05D002011 ORTHO05D001948 5.2e-09 65.9 254 30.7
Oeu027834.1 Olea europaea HOM05D002011 ORTHO05D001948 5.2e-09 65.9 251 31.5
Sp5g35160 Schrenkiella parvula HOM05D002011 ORTHO05D001948 6.8e-09 65.5 204 32.8
BolC6t40406H Brassica oleracea HOM05D002011 ORTHO05D001948 8.8e-09 65.1 189 33.3
CiPaw.08G008100 Carya illinoinensis HOM05D002011 ORTHO05D001948 8.8e-09 65.1 171 35.1
Glyma.06G065100 Glycine max HOM05D002011 ORTHO05D001948 1.2e-08 64.7 191 33.0
Lalb_Chr23g0268371 Lupinus albus HOM05D002011 ORTHO05D001948 1.2e-08 64.7 196 31.1
Sc23g0006520 Simmondsia chinensis HOM05D002011 ORTHO05D001948 1.2e-08 64.7 238 31.1
unitig_62.g23779 Utricularia gibba HOM05D002011 ORTHO05D001948 1.2e-08 64.7 209 32.1
AL1G27950 Arabidopsis lyrata HOM05D002011 ORTHO05D001948 1.5e-08 64.3 217 32.3
Thhalv10008783m.g Eutrema salsugineum HOM05D002011 ORTHO05D001948 1.5e-08 64.3 215 34.0
A02p23330 Brassica napus HOM05D002011 ORTHO05D001948 2.0e-08 63.9 202 33.2
Sed0005888 Sechium edule HOM05D002011 ORTHO05D001948 2.6e-08 63.5 184 35.3
Sed0018042 Sechium edule HOM05D002011 ORTHO05D001948 2.6e-08 63.5 133 36.8
VMungo1309G3164 Vigna mungo HOM05D002011 ORTHO05D001948 2.6e-08 63.5 205 31.7
Aa31LG11G4430 Aethionema arabicum HOM05D002011 ORTHO05D001948 3.4e-08 63.2 204 32.8
Haze_16633 Corylus avellana HOM05D002011 ORTHO05D001948 3.4e-08 63.2 113 45.1
Haze_16635 Corylus avellana HOM05D002011 ORTHO05D001948 3.4e-08 63.2 113 45.1
GSVIVG01017543001 Vitis vinifera HOM05D002011 ORTHO05D001948 3.4e-08 63.2 250 29.6
A09p61180 Brassica napus HOM05D002011 ORTHO05D001948 4.4e-08 62.8 207 32.4
BraA02t07327Z Brassica rapa HOM05D002011 ORTHO05D001948 4.4e-08 62.8 205 32.7
BraA09t41492Z Brassica rapa HOM05D002011 ORTHO05D001948 4.4e-08 62.8 207 32.4
CARHR016310 Cardamine hirsuta HOM05D002011 ORTHO05D001948 4.4e-08 62.8 214 32.7
CsaV3_4G036820 Cucumis sativus L. HOM05D002011 ORTHO05D001948 4.4e-08 62.8 190 34.2
BcaNung02288 Brassica carinata HOM05D002011 ORTHO05D001948 5.7e-08 62.4 176 36.4
BolC7t44794H Brassica oleracea HOM05D002011 ORTHO05D001948 5.7e-08 62.4 176 36.4
COL.COLO4_11828 Corchorus olitorius HOM05D002011 ORTHO05D001948 5.7e-08 62.4 203 32.5
AL2G40840 Arabidopsis lyrata HOM05D002011 ORTHO05D001948 7.5e-08 62.0 211 31.3
C07p42640 Brassica napus HOM05D002011 ORTHO05D001948 7.5e-08 62.0 176 36.4
Duzib192G0037 Durio zibethinus HOM05D002011 ORTHO05D001948 7.5e-08 62.0 252 29.8
AT1G15800 Arabidopsis thaliana HOM05D002011 ORTHO05D001948 9.8e-08 61.6 214 33.2
BcaB05g25241 Brassica carinata HOM05D002011 ORTHO05D001948 9.8e-08 61.6 210 31.9
Cfa013098 Carpinus fangiana HOM05D002011 ORTHO05D001948 9.8e-08 61.6 187 33.7
CiPaw.07G227200 Carya illinoinensis HOM05D002011 ORTHO05D001948 1.3e-07 61.2 197 33.5
Nn2g12257 Nelumbo nucifera HOM05D002011 ORTHO05D001948 1.3e-07 61.2 192 31.8
Thecc.06G036100 Theobroma cacao HOM05D002011 ORTHO05D001948 1.3e-07 61.2 239 29.7
BcaC03g15943 Brassica carinata HOM05D002011 ORTHO05D001948 1.7e-07 60.8 205 33.7
MELO3C016985.2 Cucumis melo HOM05D002011 ORTHO05D001948 1.7e-07 60.8 186 33.3
Glyma.04G063900 Glycine max HOM05D002011 ORTHO05D001948 1.7e-07 60.8 177 33.3
Hund29456 Selenicereus undatus HOM05D002011 ORTHO05D001948 1.7e-07 60.8 235 28.9
Hund29458 Selenicereus undatus HOM05D002011 ORTHO05D001948 1.7e-07 60.8 235 28.9
Actinidia22311 Actinidia chinensis HOM05D002011 ORTHO05D001948 2.2e-07 60.5 167 34.7
CARHR188280 Cardamine hirsuta HOM05D002011 ORTHO05D001948 2.2e-07 60.5 180 32.8
Sed0021865 Sechium edule HOM05D002011 ORTHO05D001948 2.2e-07 60.5 213 31.5
arahy.Tifrunner.gnm1.ann1.KH3NQE Arachis hypogaea HOM05D002011 ORTHO05D001948 2.8e-07 60.1 215 29.8
A07p26760 Brassica napus HOM05D000930 ORTHO05D001948 2.8e-07 60.1 212 30.2
BolC2t09720H Brassica oleracea HOM05D002011 ORTHO05D001948 2.8e-07 60.1 205 33.7
CSS0039956 Camellia sinensis var. sinensis HOM05D002011 ORTHO05D001948 2.8e-07 60.1 242 30.2
BcaB03g14520 Brassica carinata HOM05D002011 ORTHO05D001948 3.7e-07 59.7 209 33.0
A06p11870 Brassica napus HOM05D002011 ORTHO05D001948 3.7e-07 59.7 214 34.1
C02p37050 Brassica napus HOM05D002011 ORTHO05D001948 3.7e-07 59.7 198 34.3
unitig_52.g17073 Utricularia gibba HOM05D002011 ORTHO05D001948 4.9e-07 59.3 216 29.2
arahy.Tifrunner.gnm1.ann1.ZE8HCZ Arachis hypogaea HOM05D002011 ORTHO05D001948 6.3e-07 58.9 216 29.2
Dinv38160 Davidia involucrata HOM05D002011 ORTHO05D001948 6.3e-07 58.9 169 32.5
Lsat_1_v5_gn_1_31661 Lactuca sativa HOM05D002011 ORTHO05D001948 6.3e-07 58.9 189 34.4
Solyc03g117210.4 Solanum lycopersicum HOM05D002011 ORTHO05D001948 6.3e-07 58.9 211 32.7
Nitab4.5_0008673g0020 Nicotiana tabacum HOM05D002011 ORTHO05D001948 8.3e-07 58.5 183 31.7
C06p29390 Brassica napus HOM05D000930 ORTHO05D001948 1.1e-06 58.2 212 29.7
PGR102G1217 Punica granatum HOM05D002011 ORTHO05D001948 1.1e-06 58.2 221 29.9
BraA06t24357Z Brassica rapa HOM05D002011 ORTHO05D001948 1.4e-06 57.8 213 32.9
PGR031G3130 Punica granatum HOM05D002011 ORTHO05D001948 1.4e-06 57.8 218 31.7
MELO3C011282.2 Cucumis melo HOM05D002011 ORTHO05D001948 1.8e-06 57.4 160 35.0
BcaB02g07260 Brassica carinata HOM05D002011 ORTHO05D001948 2.4e-06 57.0 209 30.6
CARHR073910 Cardamine hirsuta HOM05D002011 ORTHO05D001948 2.4e-06 57.0 217 29.0
Phvul.009G090200 Phaseolus vulgaris HOM05D002011 ORTHO05D001948 2.4e-06 57.0 200 30.5
Hund03478 Selenicereus undatus HOM05D002011 ORTHO05D001948 2.4e-06 57.0 243 29.2
Aa31LG7G400 Aethionema arabicum HOM05D002011 ORTHO05D001948 3.1e-06 56.6 208 29.3
Prupe.1G486600 Prunus persica HOM05D002011 ORTHO05D001948 3.1e-06 56.6 178 31.5
C05p14050 Brassica napus HOM05D002011 ORTHO05D001948 4.1e-06 56.2 210 32.9
BolC5t30136H Brassica oleracea HOM05D002011 ORTHO05D001948 4.1e-06 56.2 210 32.9
Sopen03g036120 Solanum pennellii HOM05D002011 ORTHO05D001948 4.1e-06 56.2 266 29.7
Aqoxy7G03522 Aquilegia oxysepala HOM05D002011 ORTHO05D001948 5.4e-06 55.8 190 31.1
BcaNung03208 Brassica carinata HOM05D002011 ORTHO05D001948 5.4e-06 55.8 181 35.4
Lj1g0007627 Lotus japonicus HOM05D002011 ORTHO05D001948 5.4e-06 55.8 194 32.5
Sp1g14100 Schrenkiella parvula HOM05D002011 ORTHO05D001948 5.4e-06 55.8 218 32.6
TWI75G1045 Tripterygium wilfordii HOM05D002011 ORTHO05D001948 5.4e-06 55.8 234 29.5
Actinidia23086 Actinidia chinensis HOM05D002011 ORTHO05D001948 7.0e-06 55.5 200 29.0
PGR044G0932 Punica granatum HOM05D002011 ORTHO05D001948 7.0e-06 55.5 191 31.9
C07p59060 Brassica napus HOM05D002011 ORTHO05D001948 9.2e-06 55.1 223 29.6
Dinv03417 Davidia involucrata HOM05D002011 ORTHO05D001948 9.2e-06 55.1 193 32.1


User provided reference genes

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