Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g103750 Medicago truncatula HOM05D002758 ORTHO05D002885 3.5e-52 208.4 136 100.0
Psat5g302120 Pisum sativum HOM05D002758 ORTHO05D002885 1.8e-32 142.9 138 61.6
TPR.G37180 Trifolium pratense HOM05D002758 ORTHO05D002885 7.1e-29 131.0 135 52.6
Glyma.08G211800 Glycine max HOM05D002758 ORTHO05D002885 1.5e-23 113.2 136 50.7
Glyma.07G031000 Glycine max HOM05D002758 ORTHO05D002885 8.5e-22 107.5 136 48.5
Phvul.010G155100 Phaseolus vulgaris HOM05D002758 ORTHO05D002885 1.1e-21 107.1 135 50.4
VMungo0331G0585 Vigna mungo HOM05D002758 ORTHO05D002885 1.9e-21 106.3 135 52.6
VMungo1080G1568 Vigna mungo HOM05D002758 ORTHO05D002885 7.2e-21 104.4 136 48.5
TPR.G38648 Trifolium pratense HOM05D002758 ORTHO05D002885 1.6e-20 103.2 136 51.5
Lj3g0013801 Lotus japonicus HOM05D002758 ORTHO05D002885 2.7e-20 102.4 138 58.0
Medtr4g010530 Medicago truncatula HOM05D002758 ORTHO05D002885 3.0e-19 99.0 135 46.7
Phvul.005G177400 Phaseolus vulgaris HOM05D002758 ORTHO05D002885 5.1e-19 98.2 136 50.7
Psat7g255440 Pisum sativum HOM05D002758 ORTHO05D002885 2.5e-18 95.9 135 52.6
Glyma.13G365000 Glycine max HOM05D002758 ORTHO05D002885 5.7e-18 94.7 136 47.8
CiPaw.01G246400 Carya illinoinensis HOM05D002758 ORTHO05D002885 1.7e-17 93.2 135 43.0
Glyma.15G008300 Glycine max HOM05D002758 ORTHO05D002885 5.3e-16 88.2 136 53.7
arahy.Tifrunner.gnm1.ann1.3WRP69 Arachis hypogaea HOM05D002758 ORTHO05D002885 2.6e-15 85.9 138 50.0
arahy.Tifrunner.gnm1.ann1.A8WRUN Arachis hypogaea HOM05D002758 ORTHO05D002885 2.6e-15 85.9 138 50.0
Dinv30594 Davidia involucrata HOM05D002758 ORTHO05D002885 1.3e-14 83.6 131 42.0
GSVIVG01017318001 Vitis vinifera HOM05D002758 ORTHO05D002885 3.8e-14 82.0 130 42.3
CiPaw.02G156300 Carya illinoinensis HOM05D002758 ORTHO05D002885 5.0e-14 81.6 136 39.0
Atru.chr1.2990 Acer truncatum HOM05D002758 ORTHO05D002885 6.5e-14 81.3 131 38.9
Ciclev10026775m.g Citrus clementina HOM05D002758 ORTHO05D002885 8.5e-14 80.9 131 42.0
arahy.Tifrunner.gnm1.ann1.66WDLV Arachis hypogaea HOM05D002758 ORTHO05D002885 1.4e-13 80.1 137 40.1
Manes.04G113800 Manihot esculenta HOM05D002758 ORTHO05D002885 4.2e-13 78.6 141 39.0
MD17G1209300 Malus domestica HOM05D002758 ORTHO05D002885 1.6e-12 76.6 132 44.7
CSS0041896 Camellia sinensis var. sinensis HOM05D002758 ORTHO05D002885 2.1e-12 76.3 132 39.4
Manes.11G055700 Manihot esculenta HOM05D002758 ORTHO05D002885 4.7e-12 75.1 131 45.0
Potri.001G192800 Populus trichocarpa HOM05D002758 ORTHO05D002885 4.7e-12 75.1 133 36.8
Lalb_Chr10g0096781 Lupinus albus HOM05D002758 ORTHO05D002885 6.1e-12 74.7 136 40.4
Lalb_Chr25g0279401 Lupinus albus HOM05D002758 ORTHO05D002885 6.1e-12 74.7 134 39.6
QL05p029455 Quercus lobata HOM05D002758 ORTHO05D002885 6.1e-12 74.7 132 39.4
Duzib235G1225 Durio zibethinus HOM05D002758 ORTHO05D002885 1.0e-11 73.9 141 39.7
TWI18G1221 Tripterygium wilfordii HOM05D002758 ORTHO05D002885 1.0e-11 73.9 132 37.1
arahy.Tifrunner.gnm1.ann1.R8JN66 Arachis hypogaea HOM05D002758 ORTHO05D002885 1.4e-11 73.6 137 41.6
arahy.Tifrunner.gnm1.ann1.FSE12S Arachis hypogaea HOM05D002758 ORTHO05D002885 5.1e-11 71.6 137 42.3
TAR626G0616 Trochodendron aralioides HOM05D002758 ORTHO05D002885 5.1e-11 71.6 133 37.6
Nn8g39466 Nelumbo nucifera HOM05D002758 ORTHO05D002885 6.7e-11 71.2 131 38.2
vmacro18989 Vaccinium macrocarpon HOM05D002758 ORTHO05D002885 6.7e-11 71.2 131 39.7
Gohir.A10G074300 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.1e-10 70.5 131 38.9
Gohir.D10G077100 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.5e-10 70.1 132 39.4
Gorai.011G083300 Gossypium raimondii HOM05D002758 ORTHO05D002885 1.5e-10 70.1 132 39.4
Thecc.06G021700 Theobroma cacao HOM05D002758 ORTHO05D002885 1.5e-10 70.1 139 38.8
Cfa001976 Carpinus fangiana HOM05D002758 ORTHO05D002885 2.0e-10 69.7 135 33.3
Lj3g0008770 Lotus japonicus HOM05D002758 ORTHO05D002885 2.6e-10 69.3 157 40.8
COL.COLO4_12950 Corchorus olitorius HOM05D002758 ORTHO05D002885 3.3e-10 68.9 135 37.8
Nn2g12045 Nelumbo nucifera HOM05D002758 ORTHO05D002885 3.3e-10 68.9 131 37.4
Prupe.3G084900 Prunus persica HOM05D002758 ORTHO05D002885 3.3e-10 68.9 133 39.1
Aqoxy7G03691 Aquilegia oxysepala HOM05D002758 ORTHO05D002885 7.4e-10 67.8 130 40.0
CANSAT56G1388 Cannabis sativa HOM05D002758 ORTHO05D002885 1.3e-09 67.0 134 35.8
PSO210G4958 Papaver somniferum HOM05D002758 ORTHO05D002885 1.7e-09 66.6 134 37.3
BcaC08g44003 Brassica carinata HOM05D002758 ORTHO05D002885 2.8e-09 65.9 143 37.8
Actinidia15774 Actinidia chinensis HOM05D002758 ORTHO05D002885 3.7e-09 65.5 131 38.9
Cpa.g.sc10.256 Carica papaya HOM05D002758 ORTHO05D002885 3.7e-09 65.5 141 45.4
Lalb_Chr13g0301821 Lupinus albus HOM05D002758 ORTHO05D002885 3.7e-09 65.5 127 37.0
FAN05G1526 Fragaria x ananassa HOM05D002758 ORTHO05D002885 4.8e-09 65.1 130 37.7
Duzib160G0702 Durio zibethinus HOM05D002758 ORTHO05D002885 6.3e-09 64.7 131 38.2
Thecc.09G127400 Theobroma cacao HOM05D002758 ORTHO05D002885 6.3e-09 64.7 140 40.0
FAN14G2484 Fragaria x ananassa HOM05D002758 ORTHO05D002885 8.2e-09 64.3 130 37.7
Lalb_Chr01g0012401 Lupinus albus HOM05D002758 ORTHO05D002885 8.2e-09 64.3 141 36.2
Medtr4g114600 Medicago truncatula HOM05D002758 ORTHO05D002885 8.2e-09 64.3 141 35.5
A05p18910 Brassica napus HOM05D002758 ORTHO05D002885 1.1e-08 63.9 143 37.8
Glyma.04G147200 Glycine max HOM05D002758 ORTHO05D002885 1.4e-08 63.5 127 35.4
Thhalv10021746m.g Eutrema salsugineum HOM05D002758 ORTHO05D002885 1.8e-08 63.2 140 37.1
FAN02G3379 Fragaria x ananassa HOM05D002758 ORTHO05D002885 2.4e-08 62.8 130 36.9
Oeu027807.1 Olea europaea HOM05D002758 ORTHO05D002885 2.4e-08 62.8 133 35.3
QL09p026717 Quercus lobata HOM05D002758 ORTHO05D002885 2.4e-08 62.8 135 34.1
BolC6t35882H Brassica oleracea HOM05D002758 ORTHO05D002885 3.1e-08 62.4 137 35.8
FvH4_6g29910 Fragaria vesca HOM05D002758 ORTHO05D002885 3.1e-08 62.4 130 36.9
Actinidia01753 Actinidia chinensis HOM05D002758 ORTHO05D002885 4.1e-08 62.0 131 35.9
BcaC08g43429 Brassica carinata HOM05D002758 ORTHO05D002885 4.1e-08 62.0 137 35.8
Thhalv10011857m.g Eutrema salsugineum HOM05D002758 ORTHO05D002885 5.3e-08 61.6 143 42.7
Manes.06G058000 Manihot esculenta HOM05D002758 ORTHO05D002885 7.0e-08 61.2 134 33.6
PGR031G0668 Punica granatum HOM05D002758 ORTHO05D002885 7.0e-08 61.2 132 34.1
Duzib150G0461 Durio zibethinus HOM05D002758 ORTHO05D002885 9.1e-08 60.8 127 36.2
ClCG07G012650 Citrullus lanatus HOM05D002758 ORTHO05D002885 1.2e-07 60.5 141 43.3
Duzib187G0530 Durio zibethinus HOM05D002758 ORTHO05D002885 1.2e-07 60.5 129 37.2
PSO210G1692 Papaver somniferum HOM05D002758 ORTHO05D002885 1.2e-07 60.5 134 35.1
Psat4g039800 Pisum sativum HOM05D002758 ORTHO05D002885 1.2e-07 60.5 131 39.7
AL1G60820 Arabidopsis lyrata HOM05D002758 ORTHO05D002885 1.5e-07 60.1 139 39.6
Sed0016169 Sechium edule HOM05D002758 ORTHO05D002885 2.0e-07 59.7 137 35.0
Hund00526 Selenicereus undatus HOM05D002758 ORTHO05D002885 2.0e-07 59.7 141 35.5
MSTRG.11135 Avicennia marina HOM05D002758 ORTHO05D002885 2.6e-07 59.3 131 36.6
BcaC08g43430 Brassica carinata HOM05D002758 ORTHO05D002885 2.6e-07 59.3 142 34.5
BraA05t20788Z Brassica rapa HOM05D002758 ORTHO05D002885 2.6e-07 59.3 143 42.7
CARHR042690 Cardamine hirsuta HOM05D002758 ORTHO05D002885 2.6e-07 59.3 139 39.6
C06p14110 Brassica napus HOM05D002758 ORTHO05D002885 3.4e-07 58.9 143 42.0
BolC6t36589H Brassica oleracea HOM05D002758 ORTHO05D002885 3.4e-07 58.9 143 42.0
Gorai.009G130900 Gossypium raimondii HOM05D002758 ORTHO05D002885 3.4e-07 58.9 135 36.3
Hma1.2p1_1962F.1_g309250 Hydrangea macrophylla HOM05D002758 ORTHO05D002885 3.4e-07 58.9 131 34.4
TPR.G26478 Trifolium pratense HOM05D002758 ORTHO05D002885 3.4e-07 58.9 147 43.5
Ca_21675_v3 Cicer arietinum L. HOM05D002758 ORTHO05D002885 4.5e-07 58.5 145 33.8
Gohir.A05G125833 Gossypium hirsutum HOM05D002758 ORTHO05D002885 5.9e-07 58.2 134 35.8
Gohir.A05G125900 Gossypium hirsutum HOM05D002758 ORTHO05D002885 5.9e-07 58.2 134 35.8
Lj4g0007884 Lotus japonicus HOM05D002758 ORTHO05D002885 5.9e-07 58.2 127 40.2
Lalb_Chr07g0178991 Lupinus albus HOM05D002758 ORTHO05D002885 5.9e-07 58.2 129 35.7
Sed0015979 Sechium edule HOM05D002758 ORTHO05D002885 7.7e-07 57.8 134 39.6
TAR383G0328 Trochodendron aralioides HOM05D002758 ORTHO05D002885 7.7e-07 57.8 124 37.1
A06p01750 Brassica napus HOM05D002758 ORTHO05D002885 1.0e-06 57.4 136 40.4
Gorai.001G042500 Gossypium raimondii HOM05D002758 ORTHO05D002885 1.0e-06 57.4 135 38.5
RcHm_v2.0_Chr2g0135861 Rosa chinensis HOM05D002758 ORTHO05D002885 1.0e-06 57.4 138 34.8
Gohir.A05G016000 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.3e-06 57.0 129 37.2
Gohir.D05G017100 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.3e-06 57.0 129 37.2
Gorai.009G017300 Gossypium raimondii HOM05D002758 ORTHO05D002885 1.3e-06 57.0 129 37.2
CANSAT11G2365 Cannabis sativa HOM05D002758 ORTHO05D002885 1.7e-06 56.6 153 32.7
Gohir.D05G126800 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.7e-06 56.6 134 35.1
PSO210G5441 Papaver somniferum HOM05D002758 ORTHO05D002885 1.7e-06 56.6 130 34.6
Sp1g39120 Schrenkiella parvula HOM05D002758 ORTHO05D002885 1.7e-06 56.6 139 38.8
BraA06t23394Z Brassica rapa HOM05D002758 ORTHO05D002885 2.2e-06 56.2 138 34.1
Hma1.2p1_0018F.1_g012340 Hydrangea macrophylla HOM05D002758 ORTHO05D002885 2.2e-06 56.2 138 33.3
Aa31LG8G2960 Aethionema arabicum HOM05D002758 ORTHO05D002885 2.9e-06 55.8 135 39.3
Nitab4.5_0005728g0010 Nicotiana tabacum HOM05D002758 ORTHO05D002885 2.9e-06 55.8 133 33.8
arahy.Tifrunner.gnm1.ann1.75SBZZ Arachis hypogaea HOM05D002758 ORTHO05D002885 5.0e-06 55.1 128 31.2
Hma1.2p1_1962F.1_g309240 Hydrangea macrophylla HOM05D002758 ORTHO05D002885 5.0e-06 55.1 131 32.8
Hma1.2p1_3201F.1_g333909 Hydrangea macrophylla HOM05D002758 ORTHO05D002885 5.0e-06 55.1 131 32.8
AT1G52565 Arabidopsis thaliana HOM05D002758 ORTHO05D002885 6.5e-06 54.7 137 38.7
BcaB02g10984 Brassica carinata HOM05D002758 ORTHO05D002885 6.5e-06 54.7 137 34.3
CARHR090850 Cardamine hirsuta HOM05D002758 ORTHO05D002885 6.5e-06 54.7 143 36.4
FvH4_1g03160 Fragaria vesca HOM05D002758 ORTHO05D002885 6.5e-06 54.7 136 35.3
FAN26G2290 Fragaria x ananassa HOM05D002758 ORTHO05D002885 6.5e-06 54.7 136 39.0
THA.LOC104815531 Tarenaya hassleriana HOM05D002758 ORTHO05D002885 6.5e-06 54.7 142 40.8
arahy.Tifrunner.gnm1.ann1.4I3R3X Arachis hypogaea HOM05D002758 ORTHO05D002885 8.5e-06 54.3 129 30.2


User provided reference genes

Program Settings