Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g103560 Medicago truncatula HOM05D003422 ORTHO05D004263 3.0e-161 572.0 334 100.0
TPR.G28314 Trifolium pratense HOM05D003422 ORTHO05D004263 6.5e-116 421.4 332 69.3
Psat7g167080 Pisum sativum HOM05D003422 ORTHO05D004263 1.1e-112 410.6 334 69.5
TPR.G37166 Trifolium pratense HOM05D003422 ORTHO05D004263 1.3e-111 407.1 333 69.7
Ca_20120_v3 Cicer arietinum L. HOM05D003422 ORTHO05D004263 6.5e-108 394.8 335 72.8
Phvul.011G000100 Phaseolus vulgaris HOM05D003422 ORTHO05D004263 7.5e-104 381.3 335 66.6
Glyma.12G119800 Glycine max HOM05D003422 ORTHO05D004263 8.2e-103 377.9 336 67.6
Phvul.010G035100 Phaseolus vulgaris HOM05D003422 ORTHO05D004263 3.1e-102 375.9 335 66.6
Glyma.06G286100 Glycine max HOM05D003422 ORTHO05D004263 5.9e-101 371.7 336 66.4
Medtr4g079190 Medicago truncatula HOM05D003422 ORTHO05D004263 2.0e-96 356.7 334 64.4
arahy.Tifrunner.gnm1.ann1.G4VR7T Arachis hypogaea HOM05D003422 ORTHO05D004263 5.7e-96 355.1 333 61.3
Lj1g0018398 Lotus japonicus HOM05D003422 ORTHO05D004263 9.8e-96 354.4 335 66.0
arahy.Tifrunner.gnm1.ann1.I3QT17 Arachis hypogaea HOM05D003422 ORTHO05D004263 3.1e-94 349.4 331 62.2
Hma1.2p1_3343F.1_g335440 Hydrangea macrophylla HOM05D003422 ORTHO05D004263 2.0e-93 346.7 338 60.9
VMungo1127G0899 Vigna mungo HOM05D003422 ORTHO05D004263 1.7e-92 343.6 335 60.0
Dinv15231 Davidia involucrata HOM05D003422 ORTHO05D004263 5.0e-92 342.0 346 59.0
Lalb_Chr04g0254851 Lupinus albus HOM05D003422 ORTHO05D004263 6.5e-92 341.7 335 65.1
QL03p061510 Quercus lobata HOM05D003422 ORTHO05D004263 1.9e-91 340.1 336 61.9
Haze_12250 Corylus avellana HOM05D003422 ORTHO05D004263 1.6e-90 337.0 338 63.6
Nn8g39875 Nelumbo nucifera HOM05D003422 ORTHO05D004263 2.7e-90 336.3 335 58.8
Sed0026406 Sechium edule HOM05D003422 ORTHO05D004263 4.7e-90 335.5 335 56.7
Cfa009213 Carpinus fangiana HOM05D003422 ORTHO05D004263 1.0e-89 334.3 338 63.6
TWI39G0719 Tripterygium wilfordii HOM05D003422 ORTHO05D004263 1.0e-89 334.3 335 60.6
TAR622G0502 Trochodendron aralioides HOM05D003422 ORTHO05D004263 1.4e-89 334.0 337 57.9
QL03p058012 Quercus lobata HOM05D003422 ORTHO05D004263 4.0e-89 332.4 335 60.3
Cfa012129 Carpinus fangiana HOM05D003422 ORTHO05D004263 6.8e-89 331.6 337 62.9
TWI23G0208 Tripterygium wilfordii HOM05D003422 ORTHO05D004263 8.8e-89 331.3 332 61.7
Haze_08919 Corylus avellana HOM05D003422 ORTHO05D004263 1.2e-88 330.9 337 62.9
CSS0036067 Camellia sinensis var. sinensis HOM05D003422 ORTHO05D004263 1.5e-88 330.5 336 57.1
CiPaw.05G181800 Carya illinoinensis HOM05D003422 ORTHO05D004263 2.6e-88 329.7 334 60.5
Oeu041425.1 Olea europaea HOM05D003422 ORTHO05D004263 2.6e-88 329.7 334 59.3
GSVIVG01021879001 Vitis vinifera HOM05D003422 ORTHO05D004263 3.4e-88 329.3 337 58.8
CiPaw.05G159400 Carya illinoinensis HOM05D003422 ORTHO05D004263 4.4e-88 328.9 334 60.2
Prupe.1G244800 Prunus persica HOM05D003422 ORTHO05D004263 4.4e-88 328.9 337 59.3
Atru.chr2.1587 Acer truncatum HOM05D003422 ORTHO05D004263 5.7e-88 328.6 334 56.3
GSVIVG01007655001 Vitis vinifera HOM05D003422 ORTHO05D004263 7.5e-88 328.2 337 58.2
Lalb_Chr10g0099861 Lupinus albus HOM05D003422 ORTHO05D004263 3.7e-87 325.9 335 63.0
Ciclev10032237m.g Citrus clementina HOM05D003422 ORTHO05D004263 8.3e-87 324.7 337 56.7
Sc14g0008740 Simmondsia chinensis HOM05D003422 ORTHO05D004263 1.8e-86 323.6 327 56.9
Atru.chr3.1581 Acer truncatum HOM05D003422 ORTHO05D004263 1.2e-85 320.9 323 58.5
Nitab4.5_0001565g0060 Nicotiana tabacum HOM05D003422 ORTHO05D004263 2.0e-85 320.1 341 55.4
MELO3C017744.2 Cucumis melo HOM05D003422 ORTHO05D004263 2.7e-85 319.7 334 56.3
Potri.012G085300 Populus trichocarpa HOM05D003422 ORTHO05D004263 4.5e-85 318.9 333 60.4
RcHm_v2.0_Chr4g0433011 Rosa chinensis HOM05D003422 ORTHO05D004263 7.7e-85 318.2 337 55.5
Nitab4.5_0009109g0040 Nicotiana tabacum HOM05D003422 ORTHO05D004263 2.3e-84 316.6 341 54.8
Nn8g40815 Nelumbo nucifera HOM05D003422 ORTHO05D004263 3.8e-84 315.8 328 61.0
Prupe.8G016700 Prunus persica HOM05D003422 ORTHO05D004263 8.6e-84 314.7 332 58.4
FAN07G0682 Fragaria x ananassa HOM05D003422 ORTHO05D004263 1.1e-83 314.3 335 57.3
arahy.Tifrunner.gnm1.ann1.FFB06F Arachis hypogaea HOM05D003422 ORTHO05D004263 2.5e-83 313.2 313 58.8
RcHm_v2.0_Chr7g0190541 Rosa chinensis HOM05D003422 ORTHO05D004263 3.3e-83 312.8 336 55.7
Nitab4.5_0016963g0010 Nicotiana tabacum HOM05D003422 ORTHO05D004263 4.3e-83 312.4 342 54.4
Sed0010066 Sechium edule HOM05D003422 ORTHO05D004263 4.3e-83 312.4 334 53.9
TAR374G1409 Trochodendron aralioides HOM05D003422 ORTHO05D004263 4.3e-83 312.4 339 56.6
Potri.015G083700 Populus trichocarpa HOM05D003422 ORTHO05D004263 5.6e-83 312.0 332 59.3
MD03G1198200 Malus domestica HOM05D003422 ORTHO05D004263 7.3e-83 311.6 338 56.2
Sabra15G0107000 Salix brachista HOM05D003422 ORTHO05D004263 4.7e-82 308.9 337 58.2
Manes.13G024200 Manihot esculenta HOM05D003422 ORTHO05D004263 8.0e-82 308.1 337 54.6
Sopen01g001810 Solanum pennellii HOM05D003422 ORTHO05D004263 1.0e-81 307.8 341 54.5
CANSAT64G0467 Cannabis sativa HOM05D003422 ORTHO05D004263 2.3e-81 306.6 339 56.9
MD11G1214400 Malus domestica HOM05D003422 ORTHO05D004263 3.0e-81 306.2 340 54.1
ClCG07G015410 Citrullus lanatus HOM05D003422 ORTHO05D004263 5.2e-81 305.4 320 56.2
Cc11_g15770 Coffea canephora HOM05D003422 ORTHO05D004263 5.2e-81 305.4 335 52.8
FAN22G1899 Fragaria x ananassa HOM05D003422 ORTHO05D004263 8.9e-81 304.7 340 57.4
Eucgr.B00992 Eucalyptus grandis HOM05D003422 ORTHO05D004263 5.7e-80 302.0 338 57.7
FAN17G2514 Fragaria x ananassa HOM05D003422 ORTHO05D004263 2.2e-79 300.1 340 57.1
Duzib068G0444 Durio zibethinus HOM05D003422 ORTHO05D004263 2.9e-79 299.7 332 58.7
Solyc01g005810.3 Solanum lycopersicum HOM05D003422 ORTHO05D004263 2.9e-79 299.7 337 54.3
Peaxi162Scf00128g00219 Petunia axillaris HOM05D003422 ORTHO05D004263 3.7e-79 299.3 271 60.9
FvH4_4g25580 Fragaria vesca HOM05D003422 ORTHO05D004263 1.8e-78 297.0 342 59.1
CsaV3_4G003000 Cucumis sativus L. HOM05D003422 ORTHO05D004263 2.7e-77 293.1 335 53.7
Eucgr.K01009 Eucalyptus grandis HOM05D003422 ORTHO05D004263 3.5e-77 292.7 339 55.8
CAN.G158.25 Capsicum annuum HOM05D003422 ORTHO05D004263 7.8e-77 291.6 325 56.3
PGSC0003DMG400032131 Solanum tuberosum HOM05D003422 ORTHO05D004263 1.3e-76 290.8 341 52.5
Nn2g13933 Nelumbo nucifera HOM05D003422 ORTHO05D004263 3.0e-76 289.7 256 66.0
Hund06028 Selenicereus undatus HOM05D003422 ORTHO05D004263 3.0e-76 289.7 338 52.1
Actinidia15098 Actinidia chinensis HOM05D003422 ORTHO05D004263 3.9e-76 289.3 335 54.3
Dinv38208 Davidia involucrata HOM05D003422 ORTHO05D004263 3.9e-76 289.3 234 65.8
COL.COLO4_05559 Corchorus olitorius HOM05D003422 ORTHO05D004263 1.1e-75 287.7 333 56.5
Cpa.g.sc33.23 Carica papaya HOM05D003422 ORTHO05D004263 1.9e-75 287.0 341 53.1
Gohir.A12G199400 Gossypium hirsutum HOM05D003422 ORTHO05D004263 1.9e-75 287.0 334 54.5
DCAR_026512 Daucus carota HOM05D003422 ORTHO05D004263 7.3e-75 285.0 331 51.7
HPP92_014432 Vanilla planifolia HOM05D003422 ORTHO05D004263 1.6e-74 283.9 335 53.4
Aqoxy5G03760 Aquilegia oxysepala HOM05D003422 ORTHO05D004263 4.7e-74 282.3 337 53.1
Gohir.D12G202200 Gossypium hirsutum HOM05D003422 ORTHO05D004263 1.0e-73 281.2 333 54.7
PGR102G0689 Punica granatum HOM05D003422 ORTHO05D004263 1.8e-73 280.4 234 61.5
Rhsim12G0110100 Rhododendron simsii HOM05D003422 ORTHO05D004263 2.3e-73 280.0 368 49.2
Gorai.008G217200 Gossypium raimondii HOM05D003422 ORTHO05D004263 6.8e-73 278.5 333 54.4
PSO017G5618 Papaver somniferum HOM05D003422 ORTHO05D004263 3.4e-72 276.2 332 51.8
SEGI_07600 Sequoiadendron giganteum HOM05D003422 ORTHO05D004263 9.8e-72 274.6 341 47.8
Sabra12G0061400 Salix brachista HOM05D003422 ORTHO05D004263 2.2e-71 273.5 366 53.3
unitig_21.g20608 Utricularia gibba HOM05D003422 ORTHO05D004263 2.9e-71 273.1 329 55.6
Thhalv10008312m.g Eutrema salsugineum HOM05D003422 ORTHO05D004263 3.7e-71 272.7 329 51.7
Thecc.03G025100 Theobroma cacao HOM05D003422 ORTHO05D004263 8.3e-71 271.6 332 53.9
Migut.E00204 Erythranthe guttata HOM05D003422 ORTHO05D004263 1.1e-70 271.2 176 75.6
HanXRQChr06g0172831 Helianthus annuus HOM05D003422 ORTHO05D004263 1.1e-70 271.2 338 50.3
Rhsim06G0078600 Rhododendron simsii HOM05D003422 ORTHO05D004263 1.1e-70 271.2 402 46.0
FAN06G1621 Fragaria x ananassa HOM05D003422 ORTHO05D004263 2.4e-70 270.0 320 51.6
Atru.chr3.1559 Acer truncatum HOM05D003422 ORTHO05D004263 4.1e-70 269.2 324 52.2
BcaB05g24600 Brassica carinata HOM05D003422 ORTHO05D004263 5.4e-70 268.9 226 61.5
PSO017G4826 Papaver somniferum HOM05D003422 ORTHO05D004263 7.0e-70 268.5 339 49.0
BcaC08g45809 Brassica carinata HOM05D003422 ORTHO05D004263 9.2e-70 268.1 226 61.5
A07p31020 Brassica napus HOM05D003422 ORTHO05D004263 9.2e-70 268.1 226 61.5
C06p36020 Brassica napus HOM05D003422 ORTHO05D004263 9.2e-70 268.1 226 61.5
BolC6t38723H Brassica oleracea HOM05D003422 ORTHO05D004263 9.2e-70 268.1 226 61.5
BcaC03g15214 Brassica carinata HOM05D003422 ORTHO05D004263 1.2e-69 267.7 226 61.5
C02p28010 Brassica napus HOM05D003422 ORTHO05D004263 1.2e-69 267.7 226 61.5
BolC2t08844H Brassica oleracea HOM05D003422 ORTHO05D004263 1.2e-69 267.7 226 61.5
AL1G31870 Arabidopsis lyrata HOM05D003422 ORTHO05D004263 2.0e-69 266.9 279 54.1
THA.LOC104822989 Tarenaya hassleriana HOM05D003422 ORTHO05D004263 2.0e-69 266.9 333 53.5
BcaB03g15550 Brassica carinata HOM05D003422 ORTHO05D004263 2.7e-69 266.5 226 61.1
BraA02t06729Z Brassica rapa HOM05D003422 ORTHO05D004263 2.7e-69 266.5 226 61.1
A02p16750 Brassica napus HOM05D003422 ORTHO05D004263 6.0e-69 265.4 226 61.9
Carub.0001s2287 Capsella rubella HOM05D003422 ORTHO05D004263 2.3e-68 263.5 335 48.4
EL10Ac6g13812 Beta vulgaris HOM05D003422 ORTHO05D004263 3.9e-68 262.7 330 48.5
vmacro17129 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 3.9e-68 262.7 343 48.7
Rhsim02G0001300 Rhododendron simsii HOM05D003422 ORTHO05D004263 4.3e-67 259.2 356 46.3
Lsat_1_v5_gn_8_152261 Lactuca sativa HOM05D003422 ORTHO05D004263 5.6e-67 258.8 320 50.6
Sp5g25830 Schrenkiella parvula HOM05D003422 ORTHO05D004263 5.6e-67 258.8 332 50.0
PSO478G1628 Papaver somniferum HOM05D003422 ORTHO05D004263 2.8e-66 256.5 334 47.0
Aa31LG7G7310 Aethionema arabicum HOM05D003422 ORTHO05D004263 1.8e-65 253.8 337 48.7
ECA233G3049 Erigeron canadensis HOM05D003422 ORTHO05D004263 2.3e-65 253.4 333 54.1
Os07g0270900 Oryza sativa ssp. japonica HOM05D003422 ORTHO05D004263 3.1e-65 253.1 232 56.5
AT1G23280 Arabidopsis thaliana HOM05D003422 ORTHO05D004263 4.0e-65 252.7 336 46.4
Eucgr.K00985 Eucalyptus grandis HOM05D003422 ORTHO05D004263 5.2e-65 252.3 223 64.6
Zm00001eb364260 Zea mays HOM05D003422 ORTHO05D004263 6.8e-65 251.9 328 46.3
BcaC01g03409 Brassica carinata HOM05D003422 ORTHO05D004263 2.0e-64 250.4 332 49.7
C03p52870 Brassica napus HOM05D003422 ORTHO05D004263 2.0e-64 250.4 332 49.7
BraA03t13450Z Brassica rapa HOM05D003422 ORTHO05D004263 2.6e-64 250.0 338 50.0
Lsat_1_v5_gn_5_166341 Lactuca sativa HOM05D003422 ORTHO05D004263 4.4e-64 249.2 318 49.4
AUR62003555 Chenopodium quinoa HOM05D003422 ORTHO05D004263 1.7e-63 247.3 333 45.3
SMO331G0073 Selaginella moellendorffii HOM05D003422 ORTHO05D004263 1.7e-63 247.3 293 51.9
AL1G37060 Arabidopsis lyrata HOM05D003422 ORTHO05D004263 4.9e-63 245.7 280 51.4
BolC3t17554H Brassica oleracea HOM05D003422 ORTHO05D004263 4.9e-63 245.7 335 49.3
AUR62017869 Chenopodium quinoa HOM05D003422 ORTHO05D004263 4.9e-63 245.7 334 46.1
CARHR023720 Cardamine hirsuta HOM05D003422 ORTHO05D004263 1.1e-62 244.6 335 46.3
Mapoly0061s0104 Marchantia polymorpha HOM05D003422 ORTHO05D004263 1.1e-62 244.6 342 45.3
A03p43080 Brassica napus HOM05D003422 ORTHO05D004263 7.1e-62 241.9 364 45.3
Pp3c2_4220 Physcomitrium patens HOM05D003422 ORTHO05D004263 9.2e-62 241.5 340 45.0
CBR_g32274 Chara braunii HOM05D003422 ORTHO05D004263 4.6e-61 239.2 273 53.8
ATR0824G091 Amborella trichopoda HOM05D003422 ORTHO05D004263 6.0e-61 238.8 335 47.2
CDE02G2608 Ceratophyllum demersum HOM05D003422 ORTHO05D004263 6.6e-60 235.3 274 52.6
BcaC09g49229 Brassica carinata HOM05D003422 ORTHO05D004263 1.1e-59 234.6 174 65.5
SGA_v2.0_scaffold63G21735 Striga asiatica HOM05D003637 ORTHO05D004175 2.5e-59 233.4 249 61.4
A01p32170 Brassica napus HOM05D003422 ORTHO05D004263 4.3e-59 232.6 318 48.7
SpUn0343_0020 Schrenkiella parvula HOM05D003422 ORTHO05D004263 1.1e-57 228.0 313 47.0
BraA01t03342Z Brassica rapa HOM05D003422 ORTHO05D004263 6.8e-57 225.3 319 48.0
Nitab4.5_0000979g0040 Nicotiana tabacum HOM05D003422 ORTHO05D004263 3.8e-55 219.5 154 73.4
SEGI_01875 Sequoiadendron giganteum HOM05D003422 ORTHO05D004263 3.5e-53 213.0 128 79.7
CDE05G1364 Ceratophyllum demersum HOM05D003422 ORTHO05D004263 1.3e-52 211.1 292 43.5
Cre02.g145231 Chlamydomonas reinhardtii HOM05D003422 ORTHO05D004263 3.9e-52 209.5 233 47.2
Prupe.8G011700 Prunus persica HOM05D003422 ORTHO05D004263 7.3e-51 205.3 275 52.4
vmacro16194 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 2.1e-50 203.8 244 48.4
Medtr1g048860 Medicago truncatula HOM05D003422 ORTHO05D004263 1.4e-49 201.1 145 99.3
Actinidia27808 Actinidia chinensis HOM05D003422 ORTHO05D004263 3.1e-49 199.9 293 45.7
PRCOL_00004566 Prasinoderma coloniale HOM05D003422 ORTHO05D004263 4.0e-49 199.5 259 44.4
ATR0996G003 Amborella trichopoda HOM05D003422 ORTHO05D004263 2.2e-47 193.7 299 42.1
Pp3c1_36430 Physcomitrium patens HOM05D003422 ORTHO05D004263 9.3e-46 188.3 338 37.6
FvH4_7g31100 Fragaria vesca HOM05D003422 ORTHO05D004263 1.4e-41 174.5 225 45.3
MCO01G280 Micromonas commoda HOM05D003422 ORTHO05D004263 9.0e-41 171.8 174 58.6
SGA_v2.0_scaffold87G27078 Striga asiatica HOM05D003637 ORTHO05D004175 1.7e-39 167.5 254 52.8
Actinidia01349 Actinidia chinensis HOM05D003422 ORTHO05D004263 8.4e-39 165.2 314 42.4
Cfa026988 Carpinus fangiana HOM05D003422 ORTHO05D004263 7.1e-38 162.2 186 46.8
Haze_26253 Corylus avellana HOM05D003422 ORTHO05D004263 9.3e-38 161.8 178 55.6
Eucgr.K00976 Eucalyptus grandis HOM05D003422 ORTHO05D004263 1.3e-34 151.4 324 38.9
Lj1A759T42 Lonicera japonica HOM05D003422 ORTHO05D004263 6.7e-28 129.0 183 53.0
BolC1t04073H Brassica oleracea HOM05D003422 ORTHO05D004263 2.1e-26 124.0 71 78.9
C01p41190 Brassica napus HOM05D003422 ORTHO05D004263 3.7e-26 123.2 71 77.5
Eucgr.B00881 Eucalyptus grandis HOM05D003422 ORTHO05D004263 4.0e-25 119.8 71 81.7
BcaB04g17046 Brassica carinata HOM05D003422 ORTHO05D004263 1.9e-22 110.9 71 76.1
Os07g0271600 Oryza sativa ssp. japonica HOM05D003422 ORTHO05D004263 1.9e-22 110.9 77 68.8
Ah.04g165080 Amaranthus hybridus HOM05D002611 ORTHO05D002822 3.0e-20 103.6 225 38.2
BcaB01g03637 Brassica carinata HOM05D003422 ORTHO05D004263 3.9e-20 103.2 77 71.4
BolC4t24676H Brassica oleracea HOM05D003422 ORTHO05D004263 3.9e-20 103.2 114 55.3
FAN06G3710 Fragaria x ananassa HOM05D003422 ORTHO05D004263 7.4e-19 99.0 46 91.3
AagrBONN_evm.TU.Sc2ySwM_344.1527 Anthoceros agrestis HOM05D003422 ORTHO05D004263 2.1e-18 97.4 212 40.6
BcaB07g33435 Brassica carinata HOM05D003422 ORTHO05D004263 2.8e-18 97.1 77 67.5
Oeu036040.1 Olea europaea HOM05D003422 ORTHO05D004263 3.6e-13 80.1 130 41.5
BcaB01g02833 Brassica carinata HOM05D003422 ORTHO05D004263 1.8e-12 77.8 76 59.2
BcaC02g10230 Brassica carinata HOM05D003422 ORTHO05D004263 1.5e-11 74.7 73 58.9
SEGI_38458 Sequoiadendron giganteum HOM05D003422 ORTHO05D004263 5.3e-09 66.2 159 33.3
QL03p061482 Quercus lobata HOM05D003422 ORTHO05D034179 3.4e-08 63.5 123 44.7
vmacro17128 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 7.7e-08 62.4 128 41.4
BcaC09g49085 Brassica carinata HOM05D001456 ORTHO05D015898 1.9e-06 57.8 73 46.6
arahy.Tifrunner.gnm1.ann1.DEMJ59 Arachis hypogaea HOM05D028796 ORTHO05D084120 5.5e-06 56.2 93 51.6
BcaB04g17978 Brassica carinata HOM05D005786 ORTHO05D006946 5.5e-06 56.2 46 67.4


User provided reference genes

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