Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g103440 Medicago truncatula HOM05D007863 ORTHO05D009265 3.3e-44 181.4 97 100.0
Psat5g301160 Pisum sativum HOM05D007863 ORTHO05D009265 1.9e-31 139.0 99 79.8
TPR.G37228 Trifolium pratense HOM05D007863 ORTHO05D009265 4.2e-31 137.9 102 82.4
Ca_01070_v3 Cicer arietinum L. HOM05D007863 ORTHO05D009265 1.8e-21 105.9 107 66.4
Lalb_Chr14g0373721 Lupinus albus HOM05D007863 ORTHO05D009265 4.5e-17 91.3 103 60.2
Lj3g0006922 Lotus japonicus HOM05D007863 ORTHO05D009265 8.4e-16 87.0 105 61.0
arahy.Tifrunner.gnm1.ann1.JQ3RYK Arachis hypogaea HOM05D007863 ORTHO05D009265 4.2e-15 84.7 96 53.1
Lj3g0003830 Lotus japonicus HOM05D007863 ORTHO05D009265 2.7e-14 82.0 103 51.5
Medtr4g011030 Medicago truncatula HOM05D007863 ORTHO05D009265 2.7e-14 82.0 96 54.2
TPR.G38680 Trifolium pratense HOM05D007863 ORTHO05D009265 4.6e-14 81.3 98 56.1
FAN09G3905 Fragaria x ananassa HOM05D007863 ORTHO05D009265 6.0e-14 80.9 97 51.5
FvH4_6g30170 Fragaria vesca HOM05D007863 ORTHO05D009265 7.9e-14 80.5 97 52.6
FAN14G0247 Fragaria x ananassa HOM05D007863 ORTHO05D009265 7.9e-14 80.5 97 52.6
FAN05G0465 Fragaria x ananassa HOM05D007863 ORTHO05D009265 1.0e-13 80.1 97 51.5
FAN02G1499 Fragaria x ananassa HOM05D007863 ORTHO05D009265 1.8e-13 79.3 97 50.5
MD17G1207500 Malus domestica HOM05D007863 ORTHO05D009265 8.7e-13 77.0 46 84.8
Prupe.3G082000 Prunus persica HOM05D007863 ORTHO05D009265 3.3e-12 75.1 45 84.4
RcHm_v2.0_Chr2g0136401 Rosa chinensis HOM05D007863 ORTHO05D009265 3.3e-12 75.1 103 51.5
Lalb_Chr04g0262451 Lupinus albus HOM05D007863 ORTHO05D009265 1.3e-11 73.2 102 51.0
PGR102G1764 Punica granatum HOM05D007863 ORTHO05D009265 1.3e-11 73.2 51 74.5
Lalb_Chr25g0279481 Lupinus albus HOM05D007863 ORTHO05D009265 2.2e-11 72.4 107 46.7
Glyma.07G031800 Glycine max HOM05D007863 ORTHO05D009265 3.7e-11 71.6 78 50.0
Psat7g256040 Pisum sativum HOM05D007863 ORTHO05D009265 6.3e-11 70.9 95 51.6
Glyma.15G009600 Glycine max HOM05D007863 ORTHO05D009265 8.2e-11 70.5 96 51.0
Ciclev10027122m.g Citrus clementina HOM05D007863 ORTHO05D009265 1.4e-10 69.7 47 74.5
Glyma.13G364100 Glycine max HOM05D007863 ORTHO05D009265 2.4e-10 68.9 95 48.4
Manes.11G054000 Manihot esculenta HOM05D007863 ORTHO05D009265 5.3e-10 67.8 61 59.0
QL05p028236 Quercus lobata HOM05D007863 ORTHO05D009265 9.0e-10 67.0 77 50.6
Phvul.005G176000 Phaseolus vulgaris HOM05D007863 ORTHO05D009265 1.2e-09 66.6 75 54.7
Haze_16524 Corylus avellana HOM05D007863 ORTHO05D009265 1.5e-09 66.2 43 76.7
Potri.001G171701 Populus trichocarpa HOM05D007863 ORTHO05D009265 1.5e-09 66.2 48 68.8
Sabra03G0036200 Salix brachista HOM05D007863 ORTHO05D009265 1.5e-09 66.2 48 72.9
CANSAT56G0457 Cannabis sativa HOM05D007863 ORTHO05D009265 2.0e-09 65.9 48 70.8
Glyma.08G211000 Glycine max HOM05D007863 ORTHO05D009265 2.0e-09 65.9 53 66.0
DCAR_025492 Daucus carota HOM05D007863 ORTHO05D009265 3.4e-09 65.1 80 53.8
Potri.003G062300 Populus trichocarpa HOM05D007863 ORTHO05D009265 3.4e-09 65.1 54 68.5
TWI12G0528 Tripterygium wilfordii HOM05D007863 ORTHO05D009265 3.4e-09 65.1 57 61.4
Gohir.A10G075500 Gossypium hirsutum HOM05D007863 ORTHO05D009265 4.5e-09 64.7 59 59.3
Gohir.D10G076000 Gossypium hirsutum HOM05D007863 ORTHO05D009265 4.5e-09 64.7 59 59.3
Gorai.011G081800 Gossypium raimondii HOM05D007863 ORTHO05D009265 4.5e-09 64.7 59 59.3
Thecc.06G070300 Theobroma cacao HOM05D007863 ORTHO05D009265 4.5e-09 64.7 89 46.1
Cfa001994 Carpinus fangiana HOM05D007863 ORTHO05D009265 5.9e-09 64.3 56 62.5
COL.COLO4_12919 Corchorus olitorius HOM05D007863 ORTHO05D009265 5.9e-09 64.3 45 71.1
Nitab4.5_0001764g0040 Nicotiana tabacum HOM05D007863 ORTHO05D009265 1.3e-08 63.2 44 68.2
Sopen03g035400 Solanum pennellii HOM05D007863 ORTHO05D009265 1.7e-08 62.8 44 68.2
EL10Ac9g21922 Beta vulgaris HOM05D007863 ORTHO05D009265 2.9e-08 62.0 47 66.0
SalBow2G0248 Salvia bowleyana HOM05D007863 ORTHO05D009265 2.9e-08 62.0 42 69.0
Hma1.2p1_0515F.1_g170180 Hydrangea macrophylla HOM05D007863 ORTHO05D009265 5.0e-08 61.2 47 70.2
Cpa.g.sc10.233 Carica papaya HOM05D007863 ORTHO05D009265 6.5e-08 60.8 52 59.6
CiPaw.01G245400 Carya illinoinensis HOM05D007863 ORTHO05D009265 6.5e-08 60.8 78 48.7
AUR62011544 Chenopodium quinoa HOM05D007863 ORTHO05D009265 6.5e-08 60.8 95 41.1
Nitab4.5_0010254g0050 Nicotiana tabacum HOM05D007863 ORTHO05D009265 6.5e-08 60.8 103 40.8
CAN.G407.102 Capsicum annuum HOM05D007863 ORTHO05D009265 1.1e-07 60.1 67 49.3
CSS0005162 Camellia sinensis var. sinensis HOM05D007863 ORTHO05D009265 1.4e-07 59.7 45 64.4
ClCG09G002780 Citrullus lanatus HOM05D007863 ORTHO05D009265 1.9e-07 59.3 46 69.6
Solyc03g116510.1 Solanum lycopersicum HOM05D007863 ORTHO05D009265 1.9e-07 59.3 83 45.8
CsaV3_7G032550 Cucumis sativus L. HOM05D007863 ORTHO05D009265 2.5e-07 58.9 44 70.5
Rhsim08G0215300 Rhododendron simsii HOM05D007863 ORTHO05D009265 2.5e-07 58.9 74 45.9
THA.LOC104808229 Tarenaya hassleriana HOM05D007863 ORTHO05D009265 2.5e-07 58.9 48 58.3
Manes.04G115800 Manihot esculenta HOM05D007863 ORTHO05D009265 9.3e-07 57.0 96 43.8
BcaB03g14543 Brassica carinata HOM05D010306 ORTHO05D009265 1.2e-06 56.6 47 63.8
BcaC07g41504 Brassica carinata HOM05D010306 ORTHO05D009265 1.2e-06 56.6 47 63.8
A09p61440 Brassica napus HOM05D010306 ORTHO05D009265 1.2e-06 56.6 47 63.8
C08p45000 Brassica napus HOM05D010306 ORTHO05D009265 1.2e-06 56.6 47 63.8
BolC8t52046H Brassica oleracea HOM05D010306 ORTHO05D009265 1.2e-06 56.6 47 63.8
BraA09t41515Z Brassica rapa HOM05D010306 ORTHO05D009265 1.2e-06 56.6 47 63.8
MELO3C023407.2 Cucumis melo HOM05D007863 ORTHO05D009265 1.2e-06 56.6 46 65.2
Migut.I00793 Erythranthe guttata HOM05D007863 ORTHO05D009265 1.2e-06 56.6 57 57.9
Thhalv10009244m.g Eutrema salsugineum HOM05D010306 ORTHO05D009265 1.2e-06 56.6 83 44.6
Sp1g13730 Schrenkiella parvula HOM05D010306 ORTHO05D009265 1.2e-06 56.6 47 63.8
arahy.Tifrunner.gnm1.ann1.YMK8B4 Arachis hypogaea HOM05D007863 ORTHO05D009265 2.1e-06 55.8 48 66.7
MBI01_g37813_MAGBIO Magnolia biondii HOM05D007863 ORTHO05D009265 2.1e-06 55.8 54 57.4
Sed0015441 Sechium edule HOM05D007863 ORTHO05D009265 2.1e-06 55.8 48 62.5
Atru.chr1.3052 Acer truncatum HOM05D007863 ORTHO05D009265 2.7e-06 55.5 34 79.4
BcaC05g25488 Brassica carinata HOM05D010306 ORTHO05D009265 2.7e-06 55.5 47 61.7
C05p13530 Brassica napus HOM05D010306 ORTHO05D009265 2.7e-06 55.5 47 61.7
BolC5t30090H Brassica oleracea HOM05D010306 ORTHO05D009265 2.7e-06 55.5 47 61.7
DCAR_016255 Daucus carota HOM05D007863 ORTHO05D009265 3.6e-06 55.1 67 49.3
BraA06t24319Z Brassica rapa HOM05D010306 ORTHO05D009265 7.9e-06 53.9 76 47.4
Phvul.010G154300 Phaseolus vulgaris HOM05D007863 ORTHO05D009265 7.9e-06 53.9 53 52.8
Rhsim12G0192500 Rhododendron simsii HOM05D007863 ORTHO05D009265 7.9e-06 53.9 76 46.1


User provided reference genes

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