Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 6.6e-182 640.6 322 100.0
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 2.3e-163 578.9 333 90.4
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 3.4e-162 575.1 326 90.5
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 5.2e-155 551.2 329 86.3
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 3.1e-131 472.2 328 77.4
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 5.3e-131 471.5 328 75.6
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 2.9e-129 465.7 328 75.3
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 4.9e-129 464.9 303 78.2
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 5.5e-128 461.5 338 71.9
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 3.8e-113 412.1 305 74.4
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 3.8e-113 412.1 305 74.4
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 2.1e-111 406.4 321 67.9
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 4.6e-111 405.2 306 67.0
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 3.0e-110 402.5 306 68.3
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 1.3e-108 397.1 300 68.3
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 2.2e-108 396.4 303 68.6
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 2.2e-108 396.4 316 65.8
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 1.4e-107 393.7 325 65.8
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 6.9e-107 391.3 311 67.5
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 6.9e-107 391.3 309 67.3
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 3.8e-105 385.6 304 63.2
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 8.5e-105 384.4 335 64.5
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 5.5e-104 381.7 306 65.4
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 2.1e-103 379.8 334 59.9
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 3.6e-103 379.0 306 65.4
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.7e-103 378.6 306 65.0
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 7.9e-103 377.9 313 61.7
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 1.1e-101 374.0 306 63.7
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 1.1e-101 374.0 300 64.7
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.5e-101 373.6 301 65.4
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 2.6e-101 372.9 288 67.7
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 9.7e-101 370.9 294 65.3
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 1.3e-100 370.5 249 73.5
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.7e-100 370.2 301 64.5
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 4.8e-100 368.6 290 65.2
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 1.1e-99 367.5 307 60.6
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 1.8e-99 366.7 306 62.4
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 5.3e-99 365.2 308 59.1
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 7.0e-99 364.8 307 59.9
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 9.1e-99 364.4 305 61.0
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 1.2e-98 364.0 306 61.1
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 1.6e-98 363.6 327 59.6
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 2.0e-98 363.2 307 60.3
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 2.0e-98 363.2 306 60.8
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 3.5e-98 362.5 253 71.9
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 4.5e-98 362.1 310 60.0
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 7.7e-98 361.3 304 59.2
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 7.7e-98 361.3 304 59.2
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 1.0e-97 360.9 287 63.8
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 1.3e-97 360.5 291 64.9
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 1.3e-97 360.5 299 61.9
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 1.3e-97 360.5 288 64.9
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 2.2e-97 359.8 291 64.6
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 2.9e-97 359.4 307 59.3
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 2.9e-97 359.4 307 59.3
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 6.5e-97 358.2 313 59.1
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 8.5e-97 357.8 306 61.4
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 1.5e-96 357.1 302 62.6
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 1.9e-96 356.7 307 59.0
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 1.9e-96 356.7 309 61.5
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 5.5e-96 355.1 315 60.0
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 2.3e-94 349.7 302 60.3
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 5.2e-94 348.6 303 59.1
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 8.8e-94 347.8 303 59.1
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 8.8e-94 347.8 289 64.0
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 2.0e-93 346.7 288 63.5
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 3.3e-93 345.9 319 58.3
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 5.7e-93 345.1 298 62.4
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.2e-92 343.2 284 64.4
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 3.7e-92 342.4 294 59.9
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.7e-92 342.4 328 57.9
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 3.7e-92 342.4 291 61.2
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 1.8e-91 340.1 323 57.0
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 3.1e-91 339.3 319 56.1
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 4.1e-91 339.0 248 68.5
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 1.6e-90 337.0 282 62.4
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 2.0e-90 336.7 325 56.6
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 4.5e-90 335.5 299 58.2
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 7.7e-90 334.7 307 56.7
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 2.2e-89 333.2 290 60.7
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 2.9e-89 332.8 307 57.7
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 1.5e-88 330.5 302 56.6
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 3.2e-88 329.3 299 59.2
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 2.7e-87 326.2 286 60.8
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 3.6e-87 325.9 329 54.7
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 8.0e-87 324.7 315 56.8
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 2.3e-86 323.2 281 57.7
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 3.0e-86 322.8 328 53.4
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 4.0e-86 322.4 286 60.1
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 1.2e-85 320.9 302 59.6
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 1.2e-85 320.9 300 55.0
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 1.5e-85 320.5 293 56.0
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 3.4e-85 319.3 306 56.2
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 4.4e-85 318.9 304 56.9
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 5.7e-85 318.5 302 55.3
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 5.7e-85 318.5 286 59.1
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 9.8e-85 317.8 276 59.1
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.3e-84 317.4 304 56.6
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.2e-84 316.6 303 53.5
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.7e-84 315.8 304 56.6
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 4.8e-84 315.5 285 55.8
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 6.3e-84 315.1 254 63.0
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.1e-83 314.3 304 56.2
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.1e-83 314.3 285 56.1
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.8e-83 313.5 297 53.5
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.4e-83 313.2 285 55.8
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 3.1e-83 312.8 243 62.6
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 4.1e-83 312.4 298 55.7
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 5.4e-83 312.0 336 55.1
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 7.0e-83 311.6 259 64.1
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.2e-82 310.8 297 52.9
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 1.6e-82 310.5 248 64.1
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 5.9e-82 308.5 281 54.8
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.3e-81 307.4 282 56.4
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 1.7e-81 307.0 249 61.4
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 6.5e-81 305.1 306 55.2
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 1.2e-79 300.8 292 53.8
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 1.6e-79 300.4 285 54.4
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.6e-79 300.4 311 53.7
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.1e-79 300.1 325 52.3
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 2.7e-79 299.7 295 54.2
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 1.0e-78 297.7 259 57.5
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 1.0e-78 297.7 308 52.3
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 1.4e-78 297.4 330 52.1
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 5.2e-78 295.4 286 54.5
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 5.2e-78 295.4 247 58.7
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 6.8e-78 295.0 256 57.4
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 2.0e-77 293.5 258 57.0
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 4.4e-77 292.4 270 57.4
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 7.5e-77 291.6 276 55.4
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 4.9e-76 288.9 289 52.2
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 1.1e-75 287.7 281 54.8
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 1.4e-75 287.3 321 50.5
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 3.5e-74 282.7 282 53.9
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 1.0e-73 281.2 290 52.4
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 1.7e-73 280.4 240 60.8
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 1.7e-73 280.4 294 48.0
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 2.3e-73 280.0 247 54.3
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 2.9e-73 279.6 247 54.7
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 3.3e-72 276.2 336 45.5
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 7.3e-72 275.0 321 46.4
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 1.6e-71 273.9 319 46.1
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 4.7e-71 272.3 279 49.1
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 6.1e-71 271.9 322 45.0
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 1.4e-70 270.8 276 49.6
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 1.8e-70 270.4 279 49.5
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 3.4e-69 266.2 281 48.8
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 5.7e-69 265.4 243 55.1
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 6.4e-68 261.9 240 54.2
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 5.4e-67 258.8 160 75.6
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 7.0e-67 258.5 295 47.5
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 6.6e-65 251.9 249 52.6
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 6.6e-65 251.9 206 68.0
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 2.2e-60 236.9 157 71.3
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 4.1e-59 232.6 177 62.7
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 7.3e-56 221.9 216 51.9
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 9.5e-56 221.5 221 51.6
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 8.1e-55 218.4 160 65.0
Gohir.D10G075401 Gossypium hirsutum HOM05D003948 ORTHO05D004610 8.9e-54 214.9 149 73.8
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 1.6e-50 204.1 196 57.1
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 2.0e-45 187.2 225 48.4
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 9.9e-45 184.9 248 48.0
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 1.9e-43 180.6 241 46.9
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 7.1e-43 178.7 219 47.5
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 4.7e-39 166.0 241 37.8
Lj5A69T36 Lonicera japonica HOM05D003948 ORTHO05D004610 3.2e-35 153.3 127 66.9
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 1.9e-32 144.1 184 44.6
CARHR015950 Cardamine hirsuta HOM05D003948 ORTHO05D004610 2.5e-32 143.7 89 76.4
FAN26G3201 Fragaria x ananassa HOM05D003948 ORTHO05D004610 5.4e-27 125.9 80 76.2
Lj1g0003343 Lotus japonicus HOM05D003948 ORTHO05D004610 3.5e-26 123.2 99 64.6
Oeu041220.1 Olea europaea HOM05D003948 ORTHO05D004610 5.3e-22 109.4 77 63.6
Peaxi162Scf00274g00858 Petunia axillaris HOM05D003948 ORTHO05D004610 1.2e-21 108.2 77 71.4
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 5.8e-21 105.9 83 63.9
ClCG09G013940 Citrullus lanatus HOM05D003948 ORTHO05D004610 3.7e-15 86.7 56 73.2
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 3.1e-14 83.6 114 37.7


User provided reference genes

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