Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 0.0e+00 1370.5 708 100.0
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 0.0e+00 1109.4 746 80.3
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 0.0e+00 1082.8 721 81.6
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 1.4e-285 986.1 770 71.2
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 5.9e-284 980.7 745 71.9
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 5.3e-277 957.6 722 73.1
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 2.1e-273 945.7 754 70.3
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 1.7e-270 936.0 755 69.8
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 2.9e-254 882.1 697 70.0
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 6.6e-251 870.9 643 73.4
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 4.9e-246 854.7 753 66.4
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 1.5e-231 806.6 717 65.0
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 8.6e-227 790.8 753 61.9
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 1.5e-226 790.0 754 60.7
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 8.1e-225 784.3 721 60.5
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 1.1e-224 783.9 716 62.6
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 6.8e-224 781.2 720 61.2
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 1.9e-221 773.1 756 59.4
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 7.1e-221 771.2 760 59.2
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 2.7e-220 769.2 723 60.6
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 2.7e-220 769.2 754 58.6
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 7.8e-220 767.7 741 58.8
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 1.3e-219 766.9 756 59.3
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 1.7e-219 766.5 756 57.1
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 3.9e-219 765.4 719 61.1
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 7.3e-218 761.1 721 61.2
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 1.6e-217 760.0 722 59.3
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 1.6e-217 760.0 726 59.9
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 2.1e-217 759.6 726 59.9
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 1.2e-215 753.8 722 59.6
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 1.2e-215 753.8 739 58.3
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 7.6e-215 751.1 727 59.0
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 9.9e-215 750.7 727 58.7
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 2.2e-214 749.6 794 54.8
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 4.9e-214 748.4 717 61.9
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 5.4e-213 745.0 806 54.8
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 5.4e-213 745.0 794 54.5
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 9.3e-213 744.2 726 58.1
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 1.3e-211 740.3 722 58.7
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 6.6e-211 738.0 722 57.9
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 1.1e-208 730.7 709 57.7
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 3.1e-208 729.2 755 56.0
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 7.6e-207 724.5 759 57.0
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 8.4e-206 721.1 733 57.6
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 2.4e-205 719.5 706 58.9
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 3.2e-205 719.2 756 55.0
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 9.3e-205 717.6 710 57.2
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 1.2e-204 717.2 727 57.4
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 4.3e-202 708.8 735 56.3
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 1.6e-201 706.8 605 64.3
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 2.1e-201 706.4 734 56.0
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 2.8e-201 706.1 754 56.1
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 5.3e-200 701.8 714 55.6
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 9.0e-200 701.0 803 52.4
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 1.3e-198 697.2 776 53.2
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 2.9e-198 696.0 750 55.6
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 4.9e-198 695.3 782 52.3
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 1.4e-197 693.7 659 60.1
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 3.2e-197 692.6 708 55.4
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 5.5e-197 691.8 782 51.8
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 9.3e-197 691.0 834 50.1
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 1.2e-196 690.6 748 55.1
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 3.9e-195 685.6 818 50.5
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 3.7e-193 679.1 765 53.5
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 1.1e-192 677.6 825 50.3
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 2.4e-192 676.4 725 52.4
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 3.1e-192 676.0 845 49.8
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 1.5e-191 673.7 710 56.2
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 4.5e-191 672.2 845 49.8
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 1.0e-190 671.0 802 51.7
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 1.0e-190 671.0 806 50.1
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 2.2e-190 669.8 725 53.5
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 5.0e-190 668.7 774 52.1
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 9.3e-189 664.5 790 49.9
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 9.3e-189 664.5 764 51.8
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 2.3e-187 659.8 745 53.7
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 1.9e-186 656.8 735 52.1
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 1.9e-186 656.8 741 52.1
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 3.3e-186 656.0 741 53.2
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 1.6e-185 653.7 752 53.5
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 4.8e-185 652.1 742 50.9
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 9.0e-184 647.9 596 58.2
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 5.9e-183 645.2 690 55.2
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 7.7e-183 644.8 725 52.3
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 5.0e-182 642.1 639 55.4
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 6.5e-182 641.7 765 50.2
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 9.4e-181 637.9 718 52.2
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 6.1e-180 635.2 719 52.0
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 1.5e-178 630.6 715 51.2
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 3.3e-178 629.4 708 50.6
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 4.3e-178 629.0 707 51.5
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 2.8e-177 626.3 697 54.4
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 3.7e-177 625.9 742 50.8
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 4.8e-177 625.5 719 50.3
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 1.2e-175 620.9 709 50.9
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 1.5e-175 620.5 768 49.2
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 1.5e-175 620.5 743 50.3
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 4.5e-175 619.0 709 50.8
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 1.3e-174 617.5 737 50.5
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 1.1e-173 614.4 710 50.7
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 4.2e-173 612.5 710 50.6
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 3.0e-171 606.3 763 49.0
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 3.9e-171 605.9 711 50.5
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 1.5e-170 604.0 761 48.9
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 1.3e-169 600.9 740 49.7
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 1.7e-169 600.5 710 50.0
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 1.4e-168 597.4 713 50.6
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 9.1e-168 594.7 659 51.6
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 5.9e-167 592.0 613 53.0
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 2.7e-164 583.2 711 49.9
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 9.4e-157 558.1 659 51.3
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 6.1e-156 555.4 507 59.2
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 1.2e-154 551.2 508 58.3
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 3.1e-152 543.1 447 62.6
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 8.3e-145 518.5 742 44.7
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 1.7e-142 510.8 600 48.0
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 8.3e-137 491.9 496 53.8
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 1.2e-130 471.5 715 43.2
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 1.9e-125 454.1 527 49.9
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 1.6e-124 451.1 720 41.0
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 4.3e-109 399.8 779 37.5
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 2.4e-104 384.0 464 46.8
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 4.8e-100 369.8 734 37.6
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 4.2e-88 330.1 617 38.1
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 9.3e-88 328.9 479 42.6
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 6.7e-86 322.8 488 41.6
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 6.7e-86 322.8 482 41.5
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 6.0e-79 299.7 482 38.4
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 6.0e-79 299.7 482 38.4
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.8e-78 298.1 430 39.5
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 3.0e-78 297.4 300 54.3
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.3e-77 293.9 483 37.9
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 7.4e-77 292.7 467 39.6
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 1.9e-72 278.1 510 37.6
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 8.8e-62 242.7 369 46.3
Lj8C335T16 Lonicera japonica HOM05D004705 ORTHO05D005595 5.3e-59 233.4 387 42.1
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 1.6e-55 221.9 190 54.7
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 1.8e-51 208.4 614 35.8
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.8e-38 165.2 203 50.2
Actinidia16006 Actinidia chinensis HOM05D004705 ORTHO05D005595 5.4e-35 153.7 367 36.8
Medtr1g107505 Medicago truncatula HOM05D004705 ORTHO05D005595 8.9e-30 136.3 72 91.7
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 2.9e-25 121.3 92 56.5
Medtr1g041460 Medicago truncatula HOM05D004705 ORTHO05D005595 5.0e-17 94.0 50 90.0
Nitab4.5_0000410g0350 Nicotiana tabacum HOM05D004705 ORTHO05D005595 1.5e-16 92.4 406 29.8
GSVIVG01017207001 Vitis vinifera HOM05D029100 ORTHO05D016439 4.4e-13 80.9 81 48.1
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 9.8e-13 79.7 206 31.1
FAN08G3635 Fragaria x ananassa HOM05D004705 ORTHO05D000113 4.6e-10 70.9 74 44.6
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 4.6e-10 70.9 74 44.6
FAN21G1601 Fragaria x ananassa HOM05D000031 ORTHO05D000030 4.6e-10 70.9 53 52.8
Cpa.g.c42332 Carica papaya HOM05D004705 ORTHO05D005595 8.6e-09 66.6 53 49.1
FAN07G2703 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.9e-08 65.5 53 49.1


User provided reference genes

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