Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g102510 Medicago truncatula HOM05D004738 ORTHO05D006439 1.2e-252 875.9 431 100.0
Ca_01103_v3 Cicer arietinum L. HOM05D004738 ORTHO05D006439 1.6e-215 752.7 431 86.8
TPR.G37250 Trifolium pratense HOM05D004738 ORTHO05D006439 7.9e-207 723.8 446 82.1
VMungo1080G0347 Vigna mungo HOM05D004738 ORTHO05D006439 2.0e-194 682.6 437 77.3
Lj3g0001201 Lotus japonicus HOM05D004738 ORTHO05D006439 2.6e-194 682.2 444 77.5
Glyma.15G012500 Glycine max HOM05D004738 ORTHO05D006439 4.5e-194 681.4 441 76.6
Phvul.005G173200 Phaseolus vulgaris HOM05D004738 ORTHO05D006439 1.7e-193 679.5 439 76.5
arahy.Tifrunner.gnm1.ann1.2F1L5Z Arachis hypogaea HOM05D004738 ORTHO05D006439 6.5e-193 677.6 437 77.3
Lalb_Chr22g0351141 Lupinus albus HOM05D004738 ORTHO05D006439 1.6e-191 672.9 448 74.6
Lalb_Chr14g0373571 Lupinus albus HOM05D004738 ORTHO05D006439 1.0e-190 670.2 450 74.7
Glyma.13G361400 Glycine max HOM05D004738 ORTHO05D006439 1.8e-190 669.5 436 76.4
Lj3g0008822 Lotus japonicus HOM05D004738 ORTHO05D006439 2.0e-189 666.0 442 76.5
CiPaw.02G152800 Carya illinoinensis HOM05D004738 ORTHO05D006439 3.8e-185 651.7 439 73.8
Prupe.3G075100 Prunus persica HOM05D004738 ORTHO05D006439 5.0e-185 651.4 454 72.7
Duzib235G1168 Durio zibethinus HOM05D004738 ORTHO05D006439 8.0e-183 644.0 419 75.2
MD17G1198400 Malus domestica HOM05D004738 ORTHO05D006439 1.4e-182 643.3 451 70.7
Thecc.06G081700 Theobroma cacao HOM05D004738 ORTHO05D006439 2.3e-182 642.5 403 77.7
CANSAT56G4214 Cannabis sativa HOM05D004738 ORTHO05D006439 1.5e-181 639.8 433 74.1
Potri.003G058500 Populus trichocarpa HOM05D004738 ORTHO05D006439 2.6e-181 639.0 439 70.8
Gohir.A02G122900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 5.7e-181 637.9 411 74.9
FAN05G5687 Fragaria x ananassa HOM05D004738 ORTHO05D006439 2.2e-180 636.0 449 71.3
QL05p025470 Quercus lobata HOM05D004738 ORTHO05D006439 3.7e-180 635.2 381 77.4
arahy.Tifrunner.gnm1.ann1.S5ELWT Arachis hypogaea HOM05D004738 ORTHO05D006439 6.3e-180 634.4 400 77.5
Haze_16464 Corylus avellana HOM05D004738 ORTHO05D006439 6.3e-180 634.4 471 69.6
FAN02G1331 Fragaria x ananassa HOM05D004738 ORTHO05D006439 8.2e-180 634.0 449 71.5
Cfa002046 Carpinus fangiana HOM05D004738 ORTHO05D006439 1.4e-179 633.3 447 72.7
Gorai.002G058000 Gossypium raimondii HOM05D004738 ORTHO05D006439 1.8e-179 632.9 409 74.1
Gohir.D03G073500 Gossypium hirsutum HOM05D004738 ORTHO05D006439 5.3e-179 631.3 409 74.1
Gohir.A05G127000 Gossypium hirsutum HOM05D004738 ORTHO05D006439 3.5e-178 628.6 427 71.9
FvH4_6g30840 Fragaria vesca HOM05D004738 ORTHO05D006439 4.5e-178 628.2 385 77.4
FAN09G3531 Fragaria x ananassa HOM05D004738 ORTHO05D006439 5.9e-178 627.9 451 70.7
RcHm_v2.0_Chr2g0137281 Rosa chinensis HOM05D004738 ORTHO05D006439 1.0e-177 627.1 459 68.6
Sabra03G0032700 Salix brachista HOM05D004738 ORTHO05D006439 2.2e-177 625.9 454 68.5
Eucgr.F02574 Eucalyptus grandis HOM05D004738 ORTHO05D006439 1.5e-176 623.2 437 70.9
FAN14G4632 Fragaria x ananassa HOM05D004738 ORTHO05D006439 1.9e-176 622.9 461 68.5
Gorai.009G132100 Gossypium raimondii HOM05D004738 ORTHO05D006439 2.5e-176 622.5 429 71.6
Dinv30535 Davidia involucrata HOM05D004738 ORTHO05D006439 4.2e-176 621.7 444 70.7
Actinidia08828 Actinidia chinensis HOM05D004738 ORTHO05D006439 9.4e-176 620.5 439 70.2
COL.COLO4_02957 Corchorus olitorius HOM05D004738 ORTHO05D006439 1.2e-175 620.2 354 81.1
CSS0005409 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 2.1e-175 619.4 446 70.6
Sed0002572 Sechium edule HOM05D004738 ORTHO05D006439 2.7e-175 619.0 427 70.5
vmacro16939 Vaccinium macrocarpon HOM05D004738 ORTHO05D006439 2.7e-175 619.0 449 69.5
Potri.001G177300 Populus trichocarpa HOM05D004738 ORTHO05D006439 4.7e-175 618.2 395 74.7
Ciclev10025569m.g Citrus clementina HOM05D004738 ORTHO05D006439 1.0e-174 617.1 426 71.8
SGA_v2.0_scaffold37G14802 Striga asiatica HOM05D004738 ORTHO05D006439 1.8e-174 616.3 450 68.2
Nn2g11846 Nelumbo nucifera HOM05D004738 ORTHO05D006439 5.2e-174 614.8 428 72.4
TWI12G0818 Tripterygium wilfordii HOM05D004738 ORTHO05D006439 8.8e-174 614.0 416 71.6
CsaV3_7G032950 Cucumis sativus L. HOM05D004738 ORTHO05D006439 1.2e-173 613.6 439 68.8
HanXRQChr04g0096441 Helianthus annuus HOM05D004738 ORTHO05D006439 1.2e-173 613.6 410 72.0
MSTRG.11096 Avicennia marina HOM05D004738 ORTHO05D006439 2.0e-173 612.8 377 76.4
Cpa.g.sc10.174 Carica papaya HOM05D004738 ORTHO05D006439 5.7e-173 611.3 359 78.3
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 5.7e-173 611.3 385 74.3
Oeu022417.1 Olea europaea HOM05D004738 ORTHO05D006439 9.7e-173 610.5 453 68.0
Peaxi162Scf00015g00234 Petunia axillaris HOM05D004738 ORTHO05D006439 1.7e-172 609.8 375 76.0
Cc04_g03640 Coffea canephora HOM05D004738 ORTHO05D006439 2.8e-172 609.0 375 75.2
Lsat_1_v5_gn_1_34140 Lactuca sativa HOM05D004738 ORTHO05D006439 3.7e-172 608.6 442 68.6
Nitab4.5_0005784g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 3.7e-172 608.6 460 67.8
Migut.I00837 Erythranthe guttata HOM05D004738 ORTHO05D006439 4.8e-172 608.2 377 74.3
MELO3C023371.2 Cucumis melo HOM05D004738 ORTHO05D006439 6.3e-172 607.8 440 68.6
Aqoxy7G03780 Aquilegia oxysepala HOM05D004738 ORTHO05D006439 8.3e-172 607.4 414 71.5
Solyc03g120430.3 Solanum lycopersicum HOM05D004738 ORTHO05D006439 8.3e-172 607.4 451 67.4
ECA247G3808 Erigeron canadensis HOM05D004738 ORTHO05D006439 1.1e-171 607.1 429 68.8
Rhsim12G0195800 Rhododendron simsii HOM05D004738 ORTHO05D006439 1.1e-171 607.1 457 67.8
Sopen00g008920 Solanum pennellii HOM05D004738 ORTHO05D006439 4.1e-171 605.1 451 67.4
Sopen03g039310 Solanum pennellii HOM05D004738 ORTHO05D006439 4.1e-171 605.1 451 67.4
Nn8g39296 Nelumbo nucifera HOM05D004738 ORTHO05D006439 5.3e-171 604.7 424 70.5
PGR102G2550 Punica granatum HOM05D004738 ORTHO05D006439 7.0e-171 604.4 443 68.6
THA.LOC104808210 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 1.2e-170 603.6 388 74.2
Manes.04G120700 Manihot esculenta HOM05D004738 ORTHO05D006439 2.0e-170 602.8 454 66.7
Nitab4.5_0002424g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 4.5e-170 601.7 431 69.6
Sp5g35430 Schrenkiella parvula HOM05D004738 ORTHO05D006439 7.7e-170 600.9 423 70.2
A07p26650 Brassica napus HOM05D004738 ORTHO05D006439 1.0e-169 600.5 396 73.5
GSVIVG01017163001 Vitis vinifera HOM05D004738 ORTHO05D006439 1.0e-169 600.5 371 76.0
BraA07t30308Z Brassica rapa HOM05D004738 ORTHO05D006439 1.7e-169 599.7 428 70.1
DCAR_026302 Daucus carota HOM05D004738 ORTHO05D006439 1.7e-169 599.7 409 69.9
PGSC0003DMG400002559 Solanum tuberosum HOM05D004738 ORTHO05D006439 3.8e-169 598.6 456 66.7
THA.LOC104812476 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 5.0e-169 598.2 392 73.0
Lj9A505T66 Lonicera japonica HOM05D004738 ORTHO05D006439 3.2e-168 595.5 348 79.3
HanXRQChr02g0032631 Helianthus annuus HOM05D004738 ORTHO05D006439 4.2e-168 595.1 440 66.6
Thhalv10018540m.g Eutrema salsugineum HOM05D004738 ORTHO05D006439 5.5e-168 594.7 419 70.6
BcaC08g45309 Brassica carinata HOM05D004738 ORTHO05D006439 7.2e-168 594.3 427 69.1
BolC6t38077H Brassica oleracea HOM05D004738 ORTHO05D006439 7.2e-168 594.3 427 69.1
CARHR074130 Cardamine hirsuta HOM05D004738 ORTHO05D006439 7.2e-168 594.3 424 71.0
Sc12g0009100 Simmondsia chinensis HOM05D004738 ORTHO05D006439 7.2e-168 594.3 375 76.0
Carub.0002s2719 Capsella rubella HOM05D004738 ORTHO05D006439 9.4e-168 594.0 391 72.6
AL2G41120 Arabidopsis lyrata HOM05D004738 ORTHO05D006439 2.1e-167 592.8 436 68.6
BraA02t07352Z Brassica rapa HOM05D004738 ORTHO05D006439 2.7e-167 592.4 410 71.0
C06p29130 Brassica napus HOM05D004738 ORTHO05D006439 4.7e-167 591.7 426 68.3
A07p45280 Brassica napus HOM05D004738 ORTHO05D006439 6.1e-167 591.3 412 70.1
A02p23600 Brassica napus HOM05D004738 ORTHO05D006439 2.3e-166 589.3 426 69.0
C02p37360 Brassica napus HOM05D004738 ORTHO05D006439 2.3e-166 589.3 416 70.4
BcaB02g07276 Brassica carinata HOM05D004738 ORTHO05D006439 4.0e-166 588.6 375 73.9
BolC2t09746H Brassica oleracea HOM05D004738 ORTHO05D006439 6.8e-166 587.8 416 70.4
BraA07t32032Z Brassica rapa HOM05D004738 ORTHO05D006439 1.5e-165 586.6 437 67.0
CAN.G438.45 Capsicum annuum HOM05D004738 ORTHO05D006439 2.0e-165 586.3 417 68.8
Aa31LG4G650 Aethionema arabicum HOM05D004738 ORTHO05D006439 2.2e-164 582.8 419 69.5
BcaC08g47585 Brassica carinata HOM05D004738 ORTHO05D006439 2.2e-164 582.8 437 66.6
PSO210G3793 Papaver somniferum HOM05D004738 ORTHO05D006439 3.7e-164 582.0 434 65.9
Hund06597 Selenicereus undatus HOM05D004738 ORTHO05D006439 8.3e-164 580.9 435 67.4
BcaB05g25272 Brassica carinata HOM05D004738 ORTHO05D006439 1.1e-163 580.5 375 73.1
BcaB02g08689 Brassica carinata HOM05D004738 ORTHO05D006439 1.8e-163 579.7 420 68.1
C06p54140 Brassica napus HOM05D004738 ORTHO05D006439 5.4e-163 578.2 437 66.1
Os01g0682500 Oryza sativa ssp. japonica HOM05D004738 ORTHO05D006439 1.9e-160 569.7 349 75.6
PSO210G6241 Papaver somniferum HOM05D004738 ORTHO05D006439 7.2e-160 567.8 470 61.9
BolC6t40426H Brassica oleracea HOM05D004738 ORTHO05D006439 1.6e-159 566.6 468 62.2
AUR62011604 Chenopodium quinoa HOM05D004738 ORTHO05D006439 1.6e-159 566.6 432 66.2
AUR62016418 Chenopodium quinoa HOM05D004738 ORTHO05D006439 6.1e-159 564.7 443 64.8
MBI01_g13569_MAGBIO Magnolia biondii HOM05D004738 ORTHO05D006439 3.0e-158 562.4 422 66.4
CDE06G1313 Ceratophyllum demersum HOM05D004738 ORTHO05D006439 5.2e-158 561.6 412 66.3
Duzib192G0909 Durio zibethinus HOM05D004738 ORTHO05D006439 2.6e-157 559.3 339 77.6
Gohir.D05G127900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 3.4e-157 558.9 320 81.2
ClCG09G002360 Citrullus lanatus HOM05D004738 ORTHO05D006439 1.7e-156 556.6 391 69.1
EL10Ac9g21974 Beta vulgaris HOM05D004738 ORTHO05D006439 1.1e-155 553.9 415 68.4
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 1.0e-153 547.4 355 73.2
Zm00001eb267390 Zea mays HOM05D004738 ORTHO05D006439 6.6e-153 544.7 342 72.8
ATR0083G024 Amborella trichopoda HOM05D004738 ORTHO05D006439 6.1e-151 538.1 376 67.6
CSS0037007 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 2.9e-148 529.3 379 67.3
Zm00001eb156570 Zea mays HOM05D004738 ORTHO05D006439 1.2e-146 523.9 340 72.4
Psat5g299520 Pisum sativum HOM05D004738 ORTHO05D006439 1.3e-140 503.8 271 88.9
Nn2g11397 Nelumbo nucifera HOM05D004738 ORTHO05D006439 3.0e-137 492.7 354 65.8
unitig_21.g20511 Utricularia gibba HOM05D004738 ORTHO05D006439 3.9e-137 492.3 398 61.8
Oeu033460.1 Olea europaea HOM05D004738 ORTHO05D006439 2.9e-132 476.1 330 69.4
AT1G80380 Arabidopsis thaliana HOM05D004738 ORTHO05D006439 7.1e-131 471.5 279 76.7
HPP92_011481 Vanilla planifolia HOM05D004738 ORTHO05D006439 7.1e-131 471.5 343 66.2
Pp3c18_16070 Physcomitrium patens HOM05D004738 ORTHO05D006439 1.1e-126 457.6 330 63.9
SHI09688 Sapria himalayana HOM05D004738 ORTHO05D006439 6.4e-124 448.4 342 63.2
HPP92_011544 Vanilla planifolia HOM05D004738 ORTHO05D006439 1.1e-120 437.6 311 66.2
SEGI_20298 Sequoiadendron giganteum HOM05D004738 ORTHO05D006439 2.1e-119 433.3 337 59.6
BcaC03g15976 Brassica carinata HOM05D004738 ORTHO05D006439 4.0e-118 429.1 247 81.4
AagrBONN_evm.TU.Sc2ySwM_368.190 Anthoceros agrestis HOM05D004738 ORTHO05D006439 6.9e-118 428.3 334 58.7
SMO147G0425 Selaginella moellendorffii HOM05D004738 ORTHO05D006439 4.2e-115 419.1 336 56.5
Mapoly0010s0209 Marchantia polymorpha HOM05D004738 ORTHO05D006439 8.7e-113 411.4 331 55.9
CBR_g49861 Chara braunii HOM05D004738 ORTHO05D006439 4.8e-111 405.6 373 52.0
arahy.Tifrunner.gnm1.ann1.7R7SHJ Arachis hypogaea HOM05D004738 ORTHO05D006439 5.5e-99 365.5 295 63.4
Cre12.g542300 Chlamydomonas reinhardtii HOM05D004738 ORTHO05D006439 1.4e-91 340.9 346 46.8
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 1.3e-89 334.3 314 59.2
MCO11G539 Micromonas commoda HOM05D004738 ORTHO05D006439 2.5e-80 303.5 339 44.0
PRCOL_00005044 Prasinoderma coloniale HOM05D004738 ORTHO05D006439 4.8e-79 299.3 326 47.5
Dinv38066 Davidia involucrata HOM05D004738 ORTHO05D006439 8.0e-66 255.4 146 82.2
arahy.Tifrunner.gnm1.ann1.CI84PE Arachis hypogaea HOM05D004738 ORTHO05D006439 4.5e-61 239.6 198 63.1
Hund00584 Selenicereus undatus HOM05D004738 ORTHO05D006439 9.8e-56 221.9 174 63.8
TAR636G0147 Trochodendron aralioides HOM05D004738 ORTHO05D051490 4.1e-38 163.3 163 46.0
TAR636G3653 Trochodendron aralioides HOM05D004738 ORTHO05D051490 2.0e-37 161.0 163 45.4
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 2.7e-37 160.6 284 36.3
Nn4g26563 Nelumbo nucifera HOM05D004738 ORTHO05D006439 1.3e-36 158.3 243 39.9
Dinv38065 Davidia involucrata HOM05D004738 ORTHO05D006439 2.6e-32 144.1 81 82.7
Ah.09g223940 Amaranthus hybridus HOM05D004738 ORTHO05D001643 1.0e-28 132.1 91 70.3
Sabra01G0149000 Salix brachista HOM05D004738 ORTHO05D006439 3.6e-26 123.6 70 71.4
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 1.2e-21 108.6 63 79.4
Nn1g05393 Nelumbo nucifera HOM05D004738 ORTHO05D280673 5.6e-19 99.8 91 49.5
Pp3c21_6430 Physcomitrium patens HOM05D004738 ORTHO05D314778 5.2e-09 66.6 52 50.0
Glyma.15G221066 Glycine max HOM05D004738 ORTHO05D212055 7.1e-06 56.2 27 88.9


User provided reference genes

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