Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 4.2e-192 674.5 331 100.0
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 1.0e-137 493.8 337 73.6
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 5.6e-136 488.0 339 72.6
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 1.8e-134 483.0 338 74.3
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 4.4e-133 478.4 339 70.8
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 1.5e-125 453.4 336 69.6
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 1.9e-120 436.4 334 67.7
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 2.5e-107 392.9 339 62.8
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 7.4e-104 381.3 352 59.9
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 2.8e-103 379.4 347 59.9
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 1.1e-102 377.5 330 61.8
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 9.0e-102 374.4 330 60.9
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 2.6e-101 372.9 334 59.9
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 1.4e-99 367.1 334 60.2
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 5.5e-99 365.2 334 59.9
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 6.9e-94 348.2 358 54.5
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 2.6e-93 346.3 354 54.8
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 2.6e-93 346.3 356 53.9
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 5.9e-93 345.1 356 53.7
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 3.8e-92 342.4 360 53.3
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 7.2e-91 338.2 358 52.5
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 1.2e-90 337.4 360 52.5
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 2.1e-90 336.7 358 52.8
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 1.3e-87 327.4 356 50.8
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 8.2e-87 324.7 352 50.6
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.8e-86 323.6 359 50.7
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 2.4e-86 323.2 359 50.7
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 3.1e-86 322.8 363 49.6
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 4.1e-86 322.4 347 53.3
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 1.2e-85 320.9 362 51.4
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 1.2e-85 320.9 340 49.7
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 2.0e-85 320.1 357 50.1
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 2.6e-85 319.7 364 50.3
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 3.8e-84 315.8 354 50.0
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 3.8e-84 315.8 355 49.6
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 8.5e-84 314.7 356 48.9
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 8.5e-84 314.7 367 48.8
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 1.1e-83 314.3 362 49.7
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 1.1e-83 314.3 359 49.0
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 2.5e-83 313.2 341 50.7
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 5.5e-83 312.0 376 47.9
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 5.5e-83 312.0 376 47.9
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 1.2e-82 310.8 364 48.1
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 2.7e-82 309.7 370 46.5
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 3.6e-82 309.3 348 49.4
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 4.7e-82 308.9 354 48.0
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 4.7e-82 308.9 352 48.0
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 4.7e-82 308.9 326 50.6
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 7.9e-82 308.1 352 48.0
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 1.4e-81 307.4 362 50.8
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 1.4e-81 307.4 356 49.7
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 1.8e-81 307.0 363 50.7
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 2.3e-81 306.6 347 48.1
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 3.9e-81 305.8 350 47.7
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 5.1e-81 305.4 278 54.3
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 2.2e-79 300.1 264 56.1
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 2.8e-79 299.7 357 47.6
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 3.7e-79 299.3 361 48.2
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 6.3e-79 298.5 361 47.9
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 8.2e-79 298.1 267 53.9
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 8.2e-79 298.1 348 47.4
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 1.1e-78 297.7 350 48.6
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 1.4e-78 297.4 266 54.9
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 2.4e-78 296.6 359 45.7
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 3.1e-78 296.2 357 47.9
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 4.1e-78 295.8 343 45.5
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 4.1e-78 295.8 345 48.4
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 9.1e-78 294.7 344 49.1
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.6e-77 293.9 362 46.1
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.6e-77 293.9 362 46.1
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.6e-77 293.9 346 46.2
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 2.0e-77 293.5 264 54.9
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.6e-77 293.1 362 46.7
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 4.5e-77 292.4 269 55.4
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 5.9e-77 292.0 346 48.0
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 2.9e-76 289.7 343 47.5
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 2.9e-76 289.7 272 55.9
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 6.5e-76 288.5 351 46.4
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 8.5e-76 288.1 349 47.9
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.5e-75 287.3 343 46.1
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 1.9e-75 287.0 338 49.4
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 3.2e-75 286.2 349 47.3
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 3.2e-75 286.2 350 47.7
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 5.5e-75 285.4 350 46.9
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 5.5e-75 285.4 389 44.2
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 5.5e-75 285.4 389 44.2
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 7.2e-75 285.0 353 47.6
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 7.2e-75 285.0 353 45.6
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 9.4e-75 284.6 350 47.4
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 2.7e-74 283.1 345 48.7
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 2.7e-74 283.1 269 54.6
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 4.7e-74 282.3 345 47.0
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 6.1e-74 282.0 348 47.4
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 6.1e-74 282.0 346 46.5
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 1.4e-73 280.8 269 55.0
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.8e-73 280.4 396 43.9
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 1.8e-73 280.4 267 53.6
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 2.3e-73 280.0 336 46.7
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 5.2e-73 278.9 278 52.5
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 1.1e-72 277.7 354 44.9
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.5e-72 277.3 292 50.7
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 2.6e-72 276.6 316 49.1
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 9.7e-72 274.6 340 45.3
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 1.3e-71 274.2 229 57.6
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 1.3e-71 274.2 348 45.1
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 3.7e-71 272.7 261 52.1
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 8.2e-71 271.6 297 51.5
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 8.2e-71 271.6 287 52.3
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 8.2e-71 271.6 263 51.0
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 5.3e-70 268.9 362 44.5
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 5.3e-70 268.9 268 51.5
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 3.5e-69 266.2 261 51.7
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 3.5e-69 266.2 345 44.6
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 4.5e-69 265.8 356 44.4
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 1.3e-68 264.2 295 49.5
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 3.8e-68 262.7 280 47.9
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 3.8e-68 262.7 379 42.0
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.1e-67 261.2 361 43.8
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 2.5e-67 260.0 276 48.2
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 5.5e-67 258.8 265 49.4
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 9.4e-67 258.1 276 48.2
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 8.8e-65 251.5 276 49.3
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 1.2e-64 251.1 266 50.8
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 7.5e-64 248.4 296 49.7
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 2.2e-63 246.9 302 48.7
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.4e-62 244.2 340 43.5
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 9.1e-62 241.5 335 42.7
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 1.6e-61 240.7 336 42.6
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 1.3e-60 237.7 269 46.1
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 1.3e-60 237.7 269 46.1
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 2.2e-60 236.9 298 46.0
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 2.9e-60 236.5 357 40.3
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 8.5e-60 235.0 269 45.7
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 6.1e-58 228.8 358 42.5
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 5.7e-56 222.2 255 48.6
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 1.7e-55 220.7 229 50.2
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 1.1e-54 218.0 379 34.3
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 1.4e-54 217.6 229 51.5
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 5.4e-54 215.7 209 54.5
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 7.0e-54 215.3 307 44.6
TPR.G33838 Trifolium pratense HOM05D003781 ORTHO05D004299 6.6e-52 208.8 163 69.3
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 8.6e-52 208.4 282 43.6
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 8.0e-50 201.8 350 36.9
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 5.2e-49 199.1 223 45.3
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 6.8e-49 198.7 263 41.4
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 4.4e-48 196.1 233 44.6
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 2.7e-45 186.8 305 39.3
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 1.5e-43 181.0 258 42.2
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 1.8e-41 174.1 252 38.9
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 4.0e-41 172.9 237 41.4
RhsimUnG0138400 Rhododendron simsii HOM05D003781 ORTHO05D004299 5.8e-40 169.1 182 53.3
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 2.4e-38 163.7 225 41.8
HanXRQChr03g0072391 Helianthus annuus HOM05D003781 ORTHO05D004299 3.5e-37 159.8 211 45.5
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 8.6e-36 155.2 442 27.8
HanXRQChr15g0472861 Helianthus annuus HOM05D003781 ORTHO05D004299 2.6e-32 143.7 115 53.0
Sc07g0006420 Simmondsia chinensis HOM05D003781 ORTHO05D004299 1.1e-30 138.3 112 54.5
TPR.G742 Trifolium pratense HOM05D003781 ORTHO05D004299 8.6e-28 128.6 86 76.7
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 1.1e-27 128.3 173 41.0
ATR0772G001 Amborella trichopoda HOM05D003781 ORTHO05D004299 3.3e-27 126.7 163 46.6
PRCOL_00001992 Prasinoderma coloniale HOM05D003781 ORTHO05D004299 1.5e-24 117.9 281 29.2
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 9.2e-22 108.6 199 38.7
SGA_v2.0_scaffold31G12848 Striga asiatica HOM05D003781 ORTHO05D004299 7.8e-21 105.5 112 44.6
Lsat_1_v5_gn_1_27721 Lactuca sativa HOM05D003781 ORTHO05D004299 6.2e-18 95.9 119 39.5
MCO12G060 Micromonas commoda HOM05D003781 ORTHO05D004299 8.1e-18 95.5 285 27.0
AL1G32760 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 3.1e-17 93.6 132 39.4
TPR.G38290 Trifolium pratense HOM05D010769 ORTHO05D011972 5.2e-17 92.8 52 76.9
TPR.G165 Trifolium pratense HOM05D003781 ORTHO05D004299 2.6e-16 90.5 52 75.0
CBR_g51231 Chara braunii HOM05D003781 ORTHO05D004299 4.4e-16 89.7 167 30.5
CBR_g53498 Chara braunii HOM05D003781 ORTHO05D004299 2.9e-15 87.0 81 54.3
Actinidia06046 Actinidia chinensis HOM05D003781 ORTHO05D004299 4.9e-15 86.3 149 36.9
TAR629G3109 Trochodendron aralioides HOM05D003781 ORTHO05D004299 2.4e-14 84.0 103 48.5
CBR_g53714 Chara braunii HOM05D003781 ORTHO05D004299 4.2e-14 83.2 173 27.7
EL10Ac6g14086 Beta vulgaris HOM05D003781 ORTHO05D004299 2.1e-13 80.9 83 41.0
TPR.G7497 Trifolium pratense HOM05D003781 ORTHO05D004299 3.5e-13 80.1 51 72.5
Gohir.D04G105401 Gossypium hirsutum HOM05D003781 ORTHO05D004299 3.9e-12 76.6 95 41.1
Gorai.005G179000 Gossypium raimondii HOM05D003781 ORTHO05D004299 6.6e-12 75.9 95 40.0
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 8.7e-12 75.5 100 37.0
Cre12.g542400 Chlamydomonas reinhardtii HOM05D003781 ORTHO05D004299 4.3e-11 73.2 114 34.2
MD10G1054000 Malus domestica HOM05D003781 ORTHO05D004299 6.2e-10 69.3 150 32.0
Cfa017313 Carpinus fangiana HOM05D003781 ORTHO05D004299 6.9e-09 65.9 39 74.4


User provided reference genes

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