Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g101480 Medicago truncatula HOM05D004680 ORTHO05D005939 4.2e-278 960.7 466 100.0
Ca_01140_v3 Cicer arietinum L. HOM05D004680 ORTHO05D005939 2.6e-240 835.1 452 88.9
TPR.G37217 Trifolium pratense HOM05D004680 ORTHO05D005939 3.9e-236 821.2 440 89.8
Glyma.13G356500 Glycine max HOM05D004680 ORTHO05D005939 2.9e-223 778.5 464 81.2
Phvul.005G169700 Phaseolus vulgaris HOM05D004680 ORTHO05D005939 2.1e-221 772.3 468 80.1
Glyma.15G017600 Glycine max HOM05D004680 ORTHO05D005939 6.1e-221 770.8 470 80.6
VMungo1080G0622 Vigna mungo HOM05D004680 ORTHO05D005939 3.5e-216 755.0 503 74.4
Lj3g0026249 Lotus japonicus HOM05D004680 ORTHO05D005939 1.0e-215 753.4 471 78.8
Lalb_Chr22g0351431 Lupinus albus HOM05D004680 ORTHO05D005939 1.2e-213 746.5 444 81.5
Sabra01G0153900 Salix brachista HOM05D004680 ORTHO05D005939 4.1e-209 731.5 449 78.6
Lalb_Chr14g0373141 Lupinus albus HOM05D004680 ORTHO05D005939 1.2e-208 729.9 440 80.5
Cfa002107 Carpinus fangiana HOM05D004680 ORTHO05D005939 1.6e-208 729.6 442 79.2
Lalb_Chr24g0395991 Lupinus albus HOM05D004680 ORTHO05D005939 5.9e-208 727.6 472 76.3
Manes.11G036700 Manihot esculenta HOM05D004680 ORTHO05D005939 1.7e-207 726.1 456 76.5
FAN09G3354 Fragaria x ananassa HOM05D004680 ORTHO05D005939 5.0e-207 724.5 444 78.6
FvH4_6g31940 Fragaria vesca HOM05D004680 ORTHO05D005939 1.1e-206 723.4 444 78.8
AL3G28890 Arabidopsis lyrata HOM05D004680 ORTHO05D005939 2.5e-206 722.2 448 77.2
Thhalv10020703m.g Eutrema salsugineum HOM05D004680 ORTHO05D005939 9.4e-206 720.3 448 77.5
AT3G16200 Arabidopsis thaliana HOM05D004680 ORTHO05D005939 1.6e-205 719.5 448 76.8
Carub.0003s1595 Capsella rubella HOM05D004680 ORTHO05D005939 2.1e-205 719.2 448 77.2
Potri.003G051200 Populus trichocarpa HOM05D004680 ORTHO05D005939 4.7e-205 718.0 453 76.2
TWI75G1773 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 6.1e-205 717.6 456 77.2
CANSAT56G3143 Cannabis sativa HOM05D004680 ORTHO05D005939 1.0e-204 716.8 454 77.1
Thecc.06G095100 Theobroma cacao HOM05D004680 ORTHO05D005939 1.0e-204 716.8 472 73.1
CARHR091390 Cardamine hirsuta HOM05D004680 ORTHO05D005939 1.8e-204 716.1 447 76.7
RcHm_v2.0_Chr2g0139361 Rosa chinensis HOM05D004680 ORTHO05D005939 1.8e-204 716.1 446 77.4
THA.LOC104817975 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 5.2e-204 714.5 458 75.5
Potri.001G186200 Populus trichocarpa HOM05D004680 ORTHO05D005939 6.8e-204 714.1 449 76.8
Duzib192G0285 Durio zibethinus HOM05D004680 ORTHO05D005939 1.5e-203 713.0 462 74.0
Duzib235G0372 Durio zibethinus HOM05D004680 ORTHO05D005939 5.7e-203 711.1 465 74.0
Sp3g14570 Schrenkiella parvula HOM05D004680 ORTHO05D005939 5.7e-203 711.1 448 75.9
Peaxi162Scf00015g00135 Petunia axillaris HOM05D004680 ORTHO05D005939 1.3e-202 709.9 438 76.5
BcaC09g48589 Brassica carinata HOM05D004680 ORTHO05D005939 1.7e-202 709.5 448 76.3
C05p50300 Brassica napus HOM05D004680 ORTHO05D005939 6.3e-202 707.6 448 75.9
BraA01t03850Z Brassica rapa HOM05D004680 ORTHO05D005939 1.1e-201 706.8 449 75.9
HanXRQChr02g0032341 Helianthus annuus HOM05D004680 ORTHO05D005939 1.1e-201 706.8 437 75.7
FAN14G5860 Fragaria x ananassa HOM05D004680 ORTHO05D005939 1.4e-201 706.4 460 75.2
Cpa.g.sc109.43 Carica papaya HOM05D004680 ORTHO05D005939 1.8e-201 706.1 438 77.4
CsaV3_3G023810 Cucumis sativus L. HOM05D004680 ORTHO05D005939 1.8e-201 706.1 441 76.6
Dinv30468 Davidia involucrata HOM05D004680 ORTHO05D005939 1.8e-201 706.1 437 78.0
Hma1.2p1_1262F.1_g271230 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 1.8e-201 706.1 440 77.7
A01p37900 Brassica napus HOM05D004680 ORTHO05D005939 3.1e-201 705.3 449 75.7
PGR102G2014 Punica granatum HOM05D004680 ORTHO05D005939 4.1e-201 704.9 441 76.4
QL05p021321 Quercus lobata HOM05D004680 ORTHO05D005939 4.1e-201 704.9 398 82.4
Sabra03G0027900 Salix brachista HOM05D004680 ORTHO05D005939 5.4e-201 704.5 441 76.4
BolC1t04776H Brassica oleracea HOM05D004680 ORTHO05D005939 9.1e-201 703.7 449 75.9
ClCG07G013200 Citrullus lanatus HOM05D004680 ORTHO05D005939 1.6e-200 703.0 463 73.4
MELO3C012983.2 Cucumis melo HOM05D004680 ORTHO05D005939 1.6e-200 703.0 441 76.2
A05p33300 Brassica napus HOM05D004680 ORTHO05D005939 2.0e-200 702.6 467 73.4
BraA05t22155Z Brassica rapa HOM05D004680 ORTHO05D005939 2.0e-200 702.6 467 73.0
C01p48080 Brassica napus HOM05D004680 ORTHO05D005939 4.5e-200 701.4 449 75.9
MD09G1207900 Malus domestica HOM05D004680 ORTHO05D005939 5.9e-200 701.0 448 75.2
Prupe.3G064100 Prunus persica HOM05D004680 ORTHO05D005939 1.0e-199 700.3 448 75.0
Gorai.011G073000 Gossypium raimondii HOM05D004680 ORTHO05D005939 1.3e-199 699.9 468 72.2
Sc12g0009530 Simmondsia chinensis HOM05D004680 ORTHO05D005939 1.7e-199 699.5 436 75.9
CiPaw.02G147900 Carya illinoinensis HOM05D004680 ORTHO05D005939 2.3e-199 699.1 441 76.2
CSS0028346 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 2.9e-199 698.7 437 76.9
arahy.Tifrunner.gnm1.ann1.I8Y04W Arachis hypogaea HOM05D004680 ORTHO05D005939 3.8e-199 698.4 364 88.5
Gohir.D10G069100 Gossypium hirsutum HOM05D004680 ORTHO05D005939 3.8e-199 698.4 468 72.2
GSVIVG01017045001 Vitis vinifera HOM05D004680 ORTHO05D005939 6.6e-199 697.6 437 76.4
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 8.6e-199 697.2 447 74.9
Rhsim08G0225100 Rhododendron simsii HOM05D004680 ORTHO05D005939 8.6e-199 697.2 442 76.2
arahy.Tifrunner.gnm1.ann1.0TRA3C Arachis hypogaea HOM05D004680 ORTHO05D005939 1.5e-198 696.4 364 88.2
Eucgr.F03051 Eucalyptus grandis HOM05D004680 ORTHO05D005939 1.5e-198 696.4 451 74.7
Gorai.009G136000 Gossypium raimondii HOM05D004680 ORTHO05D005939 1.5e-198 696.4 451 73.4
Ciclev10025565m.g Citrus clementina HOM05D004680 ORTHO05D005939 4.2e-198 694.9 463 73.4
TWI12G0154 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 4.2e-198 694.9 444 76.1
Hund06644 Selenicereus undatus HOM05D004680 ORTHO05D005939 5.5e-198 694.5 441 73.7
Migut.I00930 Erythranthe guttata HOM05D004680 ORTHO05D005939 9.5e-198 693.7 445 75.1
Gohir.A05G127800 Gossypium hirsutum HOM05D004680 ORTHO05D005939 9.5e-198 693.7 451 73.2
THA.LOC104815523 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 9.5e-198 693.7 447 75.2
Gohir.A10G067300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 2.8e-197 692.2 468 72.0
TAR383G0102 Trochodendron aralioides HOM05D004680 ORTHO05D005939 2.8e-197 692.2 437 75.5
EL10Ac9g22049 Beta vulgaris HOM05D004680 ORTHO05D005939 3.6e-197 691.8 438 74.2
Nitab4.5_0000351g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 3.6e-197 691.8 437 74.8
Solyc03g120490.3 Solanum lycopersicum HOM05D004680 ORTHO05D005939 4.7e-197 691.4 438 74.2
CSS0039709 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 6.1e-197 691.0 447 74.7
Sed0009248 Sechium edule HOM05D004680 ORTHO05D005939 6.1e-197 691.0 437 75.5
Nn3g18134 Nelumbo nucifera HOM05D004680 ORTHO05D005939 8.0e-197 690.6 436 76.1
AUR62031868 Chenopodium quinoa HOM05D004680 ORTHO05D005939 1.0e-196 690.3 436 75.0
Sopen03g039370 Solanum pennellii HOM05D004680 ORTHO05D005939 1.0e-196 690.3 438 74.0
Nitab4.5_0009963g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 1.4e-196 689.9 434 76.0
Sed0024237 Sechium edule HOM05D004680 ORTHO05D005939 1.8e-196 689.5 440 76.4
vmacro18875 Vaccinium macrocarpon HOM05D004680 ORTHO05D005939 3.0e-196 688.7 442 76.0
MD17G1189000 Malus domestica HOM05D004680 ORTHO05D005939 4.0e-196 688.3 446 74.2
AUR62016515 Chenopodium quinoa HOM05D004680 ORTHO05D005939 8.9e-196 687.2 436 74.5
Nitab4.5_0006985g0040 Nicotiana tabacum HOM05D004680 ORTHO05D005939 1.5e-195 686.4 445 73.7
PGSC0003DMG400002632 Solanum tuberosum HOM05D004680 ORTHO05D005939 1.5e-195 686.4 438 73.7
MSTRG.22656 Avicennia marina HOM05D004680 ORTHO05D005939 3.4e-195 685.3 445 73.9
Cc04_g02880 Coffea canephora HOM05D004680 ORTHO05D005939 3.7e-194 681.8 442 74.0
Ah.01g021760 Amaranthus hybridus HOM05D004680 ORTHO05D005939 6.3e-194 681.0 434 74.0
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 1.1e-193 680.2 441 73.2
SalBow2G2497 Salvia bowleyana HOM05D004680 ORTHO05D005939 1.8e-193 679.5 445 74.4
Aqoxy7G01528 Aquilegia oxysepala HOM05D004680 ORTHO05D005939 2.0e-192 676.0 441 73.7
ECA247G0440 Erigeron canadensis HOM05D004680 ORTHO05D005939 2.7e-192 675.6 430 74.7
Lsat_1_v5_gn_1_34800 Lactuca sativa HOM05D004680 ORTHO05D005939 2.7e-192 675.6 431 74.7
Nn2g11656 Nelumbo nucifera HOM05D004680 ORTHO05D005939 4.5e-192 674.9 395 79.7
SGA_v2.0_scaffold69G23355 Striga asiatica HOM05D004680 ORTHO05D005939 5.9e-192 674.5 443 73.4
Migut.D01009 Erythranthe guttata HOM05D004680 ORTHO05D005939 3.3e-190 668.7 437 72.5
Peaxi162Scf00207g01238 Petunia axillaris HOM05D004680 ORTHO05D005939 8.0e-189 664.1 435 75.2
SalBow7G2677 Salvia bowleyana HOM05D004680 ORTHO05D005939 8.0e-189 664.1 439 72.0
PSO782G2876 Papaver somniferum HOM05D004680 ORTHO05D005939 1.8e-188 662.9 410 75.1
PSO566G0328 Papaver somniferum HOM05D004680 ORTHO05D005939 3.1e-188 662.1 446 70.6
Nitab4.5_0011578g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 4.4e-187 658.3 439 72.7
SGA_v2.0_scaffold4G02014 Striga asiatica HOM05D004680 ORTHO05D005939 4.4e-187 658.3 444 71.6
Oeu050619.1 Olea europaea HOM05D004680 ORTHO05D005939 4.9e-186 654.8 519 63.8
MSTRG.9470 Avicennia marina HOM05D004680 ORTHO05D005939 6.4e-186 654.4 429 73.9
MBI04_g14933_MAGBIO Magnolia biondii HOM05D004680 ORTHO05D005939 4.1e-185 651.7 435 72.6
ATR0315G163 Amborella trichopoda HOM05D004680 ORTHO05D005939 1.1e-182 643.7 381 78.0
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 7.3e-182 641.0 433 71.4
Manes.04G131400 Manihot esculenta HOM05D004680 ORTHO05D005939 1.8e-180 636.3 446 69.7
Atru.BG.177.p Acer truncatum HOM05D004680 ORTHO05D005939 2.0e-179 632.9 322 89.1
DCAR_023071 Daucus carota HOM05D004680 ORTHO05D005939 1.3e-178 630.2 441 69.4
QL11p016400 Quercus lobata HOM05D004680 ORTHO05D005939 4.3e-174 615.1 324 86.4
HPP92_021671 Vanilla planifolia HOM05D004680 ORTHO05D005939 1.1e-172 610.5 455 66.4
Actinidia32715 Actinidia chinensis HOM05D004680 ORTHO05D005939 8.9e-172 607.4 429 69.7
Actinidia21693 Actinidia chinensis HOM05D004680 ORTHO05D005939 1.2e-171 607.1 344 81.7
unitig_899.g14773 Utricularia gibba HOM05D004680 ORTHO05D005939 5.8e-171 604.7 422 67.3
SGA_v2.0_scaffold5G02541 Striga asiatica HOM05D004680 ORTHO05D005939 8.3e-170 600.9 441 66.9
Psat5g297320 Pisum sativum HOM05D004680 ORTHO05D005939 1.9e-169 599.7 291 94.5
Lsat_1_v5_gn_4_101400 Lactuca sativa HOM05D004680 ORTHO05D005939 1.8e-164 583.2 430 66.3
Zm00001eb270670 Zea mays HOM05D004680 ORTHO05D005939 1.3e-162 577.0 412 68.0
CiPaw.01G234300 Carya illinoinensis HOM05D004680 ORTHO05D005939 3.2e-161 572.4 290 88.6
SEGI_20570 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 2.1e-160 569.7 347 72.9
FAN05G4921 Fragaria x ananassa HOM05D004680 ORTHO05D005939 1.3e-159 567.0 289 89.3
SHI25904 Sapria himalayana HOM05D004680 ORTHO05D005939 3.4e-147 525.8 287 80.5
SMO147G0400 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 2.7e-144 516.2 334 67.7
Dinv38006 Davidia involucrata HOM05D004680 ORTHO05D005939 7.9e-144 514.6 345 72.8
COL.COLO4_30464 Corchorus olitorius HOM05D004680 ORTHO05D005939 3.0e-143 512.7 266 86.8
Hma1.2p1_1617F.1_g293780 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 6.5e-138 495.0 398 66.1
Haze_16340 Corylus avellana HOM05D004680 ORTHO05D005939 2.1e-128 463.4 306 74.2
Pp3c17_20690 Physcomitrium patens HOM05D004680 ORTHO05D005939 1.2e-123 447.6 330 60.0
Sc12g0009700 Simmondsia chinensis HOM05D004680 ORTHO05D005939 6.5e-122 441.8 300 71.7
Gohir.D05G132300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 7.2e-121 438.3 314 67.5
AagrBONN_evm.TU.Sc2ySwM_369.193 Anthoceros agrestis HOM05D004680 ORTHO05D005939 2.7e-120 436.4 285 68.4
SMO358G0106 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.1e-110 404.4 339 53.4
SMO077G0005 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 2.7e-99 366.7 318 54.4
SMO114G0076 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.0e-90 338.2 338 48.5
HPP92_008141 Vanilla planifolia HOM05D004680 ORTHO05D005939 4.2e-89 332.8 272 62.1
Haze_11589 Corylus avellana HOM05D004680 ORTHO05D005939 7.3e-73 278.9 138 91.3
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 1.0e-66 258.5 179 68.2
TWI75G1313 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 3.4e-54 216.9 109 88.1
HPP92_008142 Vanilla planifolia HOM05D004680 ORTHO05D005939 9.9e-54 215.3 119 80.7
PGSC0003DMG400007734 Solanum tuberosum HOM05D004680 ORTHO05D005939 3.7e-53 213.4 124 76.6
SEGI_33813 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 3.0e-50 203.8 138 65.9
Oeu040360.1 Olea europaea HOM05D004680 ORTHO05D011268 7.6e-46 189.1 127 68.5
Hma1.2p1_1576F.1_g291660 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 2.3e-34 151.0 85 82.4
Hma1.2p1_0033F.1_g020650 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 6.6e-34 149.4 85 81.2
Zm00001eb389580 Zea mays HOM05D004680 ORTHO05D000383 2.2e-29 134.4 81 72.8
Atru.chr1.3422 Acer truncatum HOM05D004680 ORTHO05D005939 2.9e-29 134.0 101 64.4
Solyc07g014600.2 Solanum lycopersicum HOM05D004680 ORTHO05D005939 8.5e-13 79.3 52 69.2
HanXRQChr10g0311001 Helianthus annuus HOM05D004680 ORTHO05D005939 3.0e-10 70.9 114 41.2


User provided reference genes

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