Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g101430 Medicago truncatula HOM05D007702 ORTHO05D009736 2.7e-136 488.8 274 100.0
Psat5g305320 Pisum sativum HOM05D007702 ORTHO05D009736 1.5e-62 243.8 272 54.4
Ca_00991_v3 Cicer arietinum L. HOM05D007702 ORTHO05D009736 1.9e-60 236.9 269 62.8
TPR.G39495 Trifolium pratense HOM05D007702 ORTHO05D009736 6.4e-53 211.8 187 62.0
Cfa012496 Carpinus fangiana HOM05D007702 ORTHO05D009736 2.1e-48 196.8 227 48.0
Haze_08173 Corylus avellana HOM05D007702 ORTHO05D009736 8.1e-48 194.9 232 47.0
Nitab4.5_0006053g0030 Nicotiana tabacum HOM05D007702 ORTHO05D009736 8.1e-48 194.9 254 53.9
Nitab4.5_0010634g0010 Nicotiana tabacum HOM05D007702 ORTHO05D009736 1.1e-47 194.5 233 55.4
AUR62001339 Chenopodium quinoa HOM05D007702 ORTHO05D009736 1.8e-47 193.7 275 42.9
PGSC0003DMG400018255 Solanum tuberosum HOM05D007702 ORTHO05D009736 3.1e-47 193.0 247 46.6
Solyc01g102860.2 Solanum lycopersicum HOM05D007702 ORTHO05D009736 4.0e-47 192.6 232 47.8
Sc12g0011180 Simmondsia chinensis HOM05D007715 ORTHO05D009760 1.2e-46 191.0 233 45.5
Sopen01g045260 Solanum pennellii HOM05D007702 ORTHO05D009736 1.5e-46 190.7 231 48.5
Duzib235G0870 Durio zibethinus HOM05D007702 ORTHO05D009736 2.6e-46 189.9 234 46.6
Peaxi162Scf00051g00198 Petunia axillaris HOM05D007702 ORTHO05D009736 3.4e-46 189.5 222 54.5
Thecc.06G057000 Theobroma cacao HOM05D007702 ORTHO05D009736 4.5e-46 189.1 228 46.1
Cc03_g07590 Coffea canephora HOM05D007702 ORTHO05D009736 5.8e-46 188.7 246 48.0
Manes.06G177600 Manihot esculenta HOM05D007702 ORTHO05D009736 7.6e-46 188.3 235 47.2
Ah.08g217790 Amaranthus hybridus HOM05D007702 ORTHO05D009736 9.9e-46 188.0 226 45.6
CSS0020400 Camellia sinensis var. sinensis HOM05D007702 ORTHO05D009736 1.3e-45 187.6 136 66.2
PGR042G2668 Punica granatum HOM05D007702 ORTHO05D009736 1.3e-45 187.6 126 69.0
CiPaw.11G097300 Carya illinoinensis HOM05D007702 ORTHO05D009736 1.7e-45 187.2 254 44.5
MD09G1165300 Malus domestica HOM05D007702 ORTHO05D009736 2.2e-45 186.8 120 75.8
CANSAT54G1387 Cannabis sativa HOM05D007702 ORTHO05D009736 2.9e-45 186.4 121 71.9
arahy.Tifrunner.gnm1.ann1.TT2UX9 Arachis hypogaea HOM05D007702 ORTHO05D009736 6.4e-45 185.3 280 42.1
Cpa.g.sc155.12 Carica papaya HOM05D007702 ORTHO05D009736 8.4e-45 184.9 235 44.7
Prupe.3G023000 Prunus persica HOM05D007702 ORTHO05D009736 8.4e-45 184.9 121 72.7
CANSAT54G2309 Cannabis sativa HOM05D007702 ORTHO05D009736 1.1e-44 184.5 121 71.1
CDE05G1247 Ceratophyllum demersum HOM05D007702 ORTHO05D009736 1.4e-44 184.1 128 68.8
Ciclev10032212m.g Citrus clementina HOM05D007702 ORTHO05D009736 1.4e-44 184.1 124 69.4
Actinidia21887 Actinidia chinensis HOM05D007702 ORTHO05D009736 1.9e-44 183.7 121 71.9
DCAR_007958 Daucus carota HOM05D007702 ORTHO05D009736 2.4e-44 183.3 260 41.9
Atru.chr1.2666 Acer truncatum HOM05D007702 ORTHO05D009736 9.3e-44 181.4 128 71.1
AUR62025666 Chenopodium quinoa HOM05D007702 ORTHO05D009736 9.3e-44 181.4 278 41.4
EL10Ac7g18156 Beta vulgaris HOM05D007702 ORTHO05D009736 1.2e-43 181.0 232 44.0
FvH4_6g36940 Fragaria vesca HOM05D007702 ORTHO05D009736 1.6e-43 180.6 129 69.8
FAN14G5785 Fragaria x ananassa HOM05D007715 ORTHO05D009760 1.6e-43 180.6 129 69.8
TAR383G0542 Trochodendron aralioides HOM05D007702 ORTHO05D009736 2.1e-43 180.3 134 65.7
MBI07_g12934_MAGBIO Magnolia biondii HOM05D007702 ORTHO05D009736 6.0e-43 178.7 121 67.8
Potri.008G004800 Populus trichocarpa HOM05D007702 ORTHO05D009736 6.0e-43 178.7 235 46.0
Eucgr.J03180 Eucalyptus grandis HOM05D007702 ORTHO05D009736 1.3e-42 177.6 230 44.8
RcHm_v2.0_Chr2g0149381 Rosa chinensis HOM05D007702 ORTHO05D009736 1.8e-42 177.2 120 71.7
BcaB07g33554 Brassica carinata HOM05D007702 ORTHO05D009736 2.3e-42 176.8 256 41.8
Aqoxy7G02739 Aquilegia oxysepala HOM05D007702 ORTHO05D009736 3.0e-42 176.4 233 42.9
Migut.I01200 Erythranthe guttata HOM05D007702 ORTHO05D009736 3.0e-42 176.4 121 71.1
FAN05G4144 Fragaria x ananassa HOM05D007715 ORTHO05D009760 3.0e-42 176.4 125 68.8
Sabra08G0002400 Salix brachista HOM05D007702 ORTHO05D009736 3.0e-42 176.4 126 68.3
Nn2g12749 Nelumbo nucifera HOM05D007702 ORTHO05D009736 3.9e-42 176.0 132 62.9
FAN02G3529 Fragaria x ananassa HOM05D007715 ORTHO05D009760 6.7e-42 175.3 126 69.0
BcaC08g43279 Brassica carinata HOM05D007702 ORTHO05D009736 1.5e-41 174.1 255 46.7
C06p06290 Brassica napus HOM05D007702 ORTHO05D009736 1.5e-41 174.1 255 46.7
BolC6t35738H Brassica oleracea HOM05D007702 ORTHO05D009736 1.5e-41 174.1 255 46.7
Gohir.A10G002000 Gossypium hirsutum HOM05D007702 ORTHO05D009736 2.5e-41 173.3 230 43.5
Gohir.D10G002100 Gossypium hirsutum HOM05D007702 ORTHO05D009736 3.3e-41 172.9 121 68.6
Gorai.011G002500 Gossypium raimondii HOM05D007702 ORTHO05D009736 3.3e-41 172.9 121 68.6
QL12p001257 Quercus lobata HOM05D007702 ORTHO05D009736 4.3e-41 172.6 222 45.0
MELO3C024282.2 Cucumis melo HOM05D007702 ORTHO05D009736 7.4e-41 171.8 123 69.9
CsaV3_7G033690 Cucumis sativus L. HOM05D007702 ORTHO05D009736 7.4e-41 171.8 160 58.1
CARHR041100 Cardamine hirsuta HOM05D007702 ORTHO05D009736 9.6e-41 171.4 236 53.4
Thhalv10012117m.g Eutrema salsugineum HOM05D007702 ORTHO05D009736 9.6e-41 171.4 245 43.3
AT1G51080 Arabidopsis thaliana HOM05D007702 ORTHO05D009736 1.3e-40 171.0 231 47.2
A06p02690 Brassica napus HOM05D007702 ORTHO05D009736 1.3e-40 171.0 255 44.3
ClCG09G001650 Citrullus lanatus HOM05D007702 ORTHO05D009736 1.3e-40 171.0 221 46.2
CAN.G2401.1 Capsicum annuum HOM05D000005 ORTHO05D000012 2.1e-40 170.2 117 69.2
COL.COLO4_31154 Corchorus olitorius HOM05D007702 ORTHO05D009736 3.7e-40 169.5 220 44.5
Carub.0001s3998 Capsella rubella HOM05D007702 ORTHO05D009736 4.8e-40 169.1 238 50.0
AL1G58880 Arabidopsis lyrata HOM05D007702 ORTHO05D009736 6.2e-40 168.7 231 48.9
BraA06t23478Z Brassica rapa HOM05D007702 ORTHO05D009736 6.2e-40 168.7 255 41.6
Sp1g37800 Schrenkiella parvula HOM05D007702 ORTHO05D009736 1.1e-39 167.9 232 47.0
THA.LOC104817895 Tarenaya hassleriana HOM05D007702 ORTHO05D009736 1.4e-39 167.5 239 50.2
Aa31LG10G3400 Aethionema arabicum HOM05D007702 ORTHO05D009736 2.4e-39 166.8 221 48.4
SGA_v2.0_scaffold71G23985 Striga asiatica HOM05D007702 ORTHO05D009736 3.1e-39 166.4 120 67.5
Oeu049633.1 Olea europaea HOM05D007702 ORTHO05D009736 2.0e-38 163.7 220 47.3
unitig_748.g7485 Utricularia gibba HOM05D007702 ORTHO05D009736 2.0e-38 163.7 137 59.9
PSO144G0036 Papaver somniferum HOM05D007702 ORTHO05D009736 4.5e-38 162.5 106 72.6
PSO423G0097 Papaver somniferum HOM05D007702 ORTHO05D009736 3.2e-36 156.4 236 41.9
GSVIVG01029550001 Vitis vinifera HOM05D007702 ORTHO05D009736 4.2e-36 156.0 119 63.9
Lsat_1_v5_gn_1_39381 Lactuca sativa HOM05D007702 ORTHO05D009736 1.9e-33 147.1 129 55.0
SalBow6G4959 Salvia bowleyana HOM05D007702 ORTHO05D009736 3.3e-33 146.4 106 67.9
ECA236G1927 Erigeron canadensis HOM05D007702 ORTHO05D009736 3.7e-32 142.9 133 56.4
ATR1126G014 Amborella trichopoda HOM05D007702 ORTHO05D009736 4.0e-31 139.4 121 56.2
vmacro18744 Vaccinium macrocarpon HOM05D007702 ORTHO05D009736 4.0e-31 139.4 130 50.8
Os03g0138900 Oryza sativa ssp. japonica HOM05D007702 ORTHO05D009736 3.8e-29 132.9 120 54.2
Aa31LG6G10000 Aethionema arabicum HOM05D007702 ORTHO05D009736 4.6e-27 125.9 114 54.4
Gorai.011G091300 Gossypium raimondii HOM05D007702 ORTHO05D009736 6.0e-27 125.6 94 64.9
FAN09G0474 Fragaria x ananassa HOM05D007715 ORTHO05D009760 5.1e-26 122.5 103 60.2
Rhsim08G0250300 Rhododendron simsii HOM05D007702 ORTHO05D009736 1.9e-25 120.6 122 50.0
Pp3c5_18880 Physcomitrium patens HOM05D007702 ORTHO05D009736 4.3e-25 119.4 122 49.2
Mapoly0020s0094 Marchantia polymorpha HOM05D007702 ORTHO05D009736 1.8e-23 114.0 220 31.8
AagrBONN_evm.TU.Sc2ySwM_228.5746 Anthoceros agrestis HOM05D007702 ORTHO05D009736 5.9e-22 109.0 128 43.0
Aa31LG3G5120 Aethionema arabicum HOM05D007702 ORTHO05D009736 7.6e-22 108.6 108 49.1
EL10Ac3g06847 Beta vulgaris HOM05D000495 ORTHO05D009736 1.3e-21 107.8 115 49.6
Zm00001eb230260 Zea mays HOM05D007702 ORTHO05D009736 1.3e-21 107.8 123 47.2
SEGI_14624 Sequoiadendron giganteum HOM05D007702 ORTHO05D009736 5.5e-20 102.4 121 43.0
FAN07G0391 Fragaria x ananassa HOM05D007702 ORTHO05D009736 3.9e-10 69.7 58 62.1
Dinv37777 Davidia involucrata HOM05D000532 ORTHO05D002745 2.0e-09 67.4 39 74.4
FAN10G3703 Fragaria x ananassa HOM05D007702 ORTHO05D009736 2.0e-09 67.4 51 66.7
AL3G14490 Arabidopsis lyrata HOM05D007702 ORTHO05D009736 1.2e-06 58.2 59 52.5
Actinidia21654 Actinidia chinensis HOM05D007715 ORTHO05D009760 2.0e-06 57.4 28 89.3
FAN02G1843 Fragaria x ananassa HOM05D007702 ORTHO05D009736 3.4e-06 56.6 50 62.0


User provided reference genes

Program Settings