Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g099440 Medicago truncatula HOM05D007459 ORTHO05D009234 3.1e-87 325.1 166 100.0
TPR.G6565 Trifolium pratense HOM05D007459 ORTHO05D009234 1.8e-66 256.1 165 78.2
TPR.G13012 Trifolium pratense HOM05D007459 ORTHO05D009234 4.0e-66 255.0 166 78.3
Ca_01236_v3 Cicer arietinum L. HOM05D007459 ORTHO05D009234 6.6e-61 237.7 170 71.8
Psat5g291760 Pisum sativum HOM05D007459 ORTHO05D009234 8.6e-61 237.3 168 74.4
Lj3g0013618 Lotus japonicus HOM05D007459 ORTHO05D009234 9.3e-55 217.2 170 68.8
Phvul.005G155700 Phaseolus vulgaris HOM05D007459 ORTHO05D009234 9.9e-49 197.2 163 63.8
Glyma.13G346600 Glycine max HOM05D007459 ORTHO05D009234 2.1e-46 189.5 166 60.2
Lalb_Chr22g0352011 Lupinus albus HOM05D007459 ORTHO05D009234 1.0e-45 187.2 170 59.4
Manes.04G050800 Manihot esculenta HOM05D007459 ORTHO05D009234 1.3e-43 180.3 172 57.6
Thecc.04G171000 Theobroma cacao HOM05D007459 ORTHO05D009234 1.8e-42 176.4 171 57.3
MD04G1047100 Malus domestica HOM05D007459 ORTHO05D009234 2.4e-42 176.0 169 57.4
QL10p052586 Quercus lobata HOM05D007459 ORTHO05D009234 1.5e-41 173.3 172 54.7
Potri.007G134400 Populus trichocarpa HOM05D007459 ORTHO05D009234 2.6e-41 172.6 176 52.3
Sabra07G0109100 Salix brachista HOM05D007459 ORTHO05D009234 5.8e-41 171.4 176 51.7
Duzib151G0483 Durio zibethinus HOM05D007459 ORTHO05D009234 7.6e-41 171.0 169 56.2
MELO3C017778.2 Cucumis melo HOM05D007459 ORTHO05D009234 1.7e-40 169.9 170 55.3
CiPaw.01G173000 Carya illinoinensis HOM05D007459 ORTHO05D009234 2.2e-40 169.5 170 52.9
Ciclev10022478m.g Citrus clementina HOM05D007459 ORTHO05D009234 2.2e-40 169.5 183 53.0
CsaV3_4G002640 Cucumis sativus L. HOM05D007459 ORTHO05D009234 2.2e-40 169.5 163 56.4
Atru.chr4.1350 Acer truncatum HOM05D007459 ORTHO05D009234 4.9e-40 168.3 174 54.0
Haze_01404 Corylus avellana HOM05D007459 ORTHO05D009234 3.2e-39 165.6 171 52.0
RcHm_v2.0_Chr2g0138101 Rosa chinensis HOM05D007459 ORTHO05D009234 2.7e-38 162.5 169 52.7
Cfa015229 Carpinus fangiana HOM05D007459 ORTHO05D009234 3.5e-38 162.2 171 51.5
Haze_01410 Corylus avellana HOM05D007459 ORTHO05D009234 4.6e-38 161.8 171 51.5
FAN05G5726 Fragaria x ananassa HOM05D007459 ORTHO05D009234 4.6e-38 161.8 166 53.6
Hma1.2p1_0554F.1_g177940 Hydrangea macrophylla HOM05D007459 ORTHO05D009234 6.0e-38 161.4 173 51.4
Hma1.2p1_2359F.1_g320593 Hydrangea macrophylla HOM05D007459 ORTHO05D009234 6.0e-38 161.4 173 51.4
COL.COLO4_28394 Corchorus olitorius HOM05D007459 ORTHO05D009234 7.9e-38 161.0 172 54.7
Dinv44169 Davidia involucrata HOM05D007459 ORTHO05D009234 1.8e-37 159.8 170 54.1
Lj6A129T18 Lonicera japonica HOM05D007459 ORTHO05D009234 1.8e-37 159.8 171 49.1
FvH4_6g31340 Fragaria vesca HOM05D007459 ORTHO05D009234 3.9e-37 158.7 166 53.0
FAN14G2685 Fragaria x ananassa HOM05D007459 ORTHO05D009234 3.9e-37 158.7 166 53.0
Prupe.1G201700 Prunus persica HOM05D007459 ORTHO05D009234 5.1e-37 158.3 169 52.1
Sed0000488 Sechium edule HOM05D007459 ORTHO05D009234 1.9e-36 156.4 167 53.3
PGR142G0909 Punica granatum HOM05D007459 ORTHO05D009234 2.5e-36 156.0 170 50.6
CANSAT56G1213 Cannabis sativa HOM05D007459 ORTHO05D009234 7.4e-36 154.5 170 52.4
Gorai.005G125500 Gossypium raimondii HOM05D007459 ORTHO05D009234 1.6e-35 153.3 171 51.5
A04p32820 Brassica napus HOM05D007459 ORTHO05D009234 2.1e-35 152.9 164 51.2
BraA04t18744Z Brassica rapa HOM05D007459 ORTHO05D009234 2.1e-35 152.9 164 51.2
CSS0017730 Camellia sinensis var. sinensis HOM05D007459 ORTHO05D009234 3.7e-35 152.1 174 47.7
Gohir.D02G110600 Gossypium hirsutum HOM05D007459 ORTHO05D009234 4.8e-35 151.8 171 50.9
Peaxi162Scf00180g00063 Petunia axillaris HOM05D007459 ORTHO05D009234 6.2e-35 151.4 168 51.2
Gohir.A02G092500 Gossypium hirsutum HOM05D007459 ORTHO05D009234 1.1e-34 150.6 171 49.7
BcaC02g07169 Brassica carinata HOM05D007459 ORTHO05D009234 1.4e-34 150.2 164 50.6
BcaC02g07170 Brassica carinata HOM05D007459 ORTHO05D009234 1.4e-34 150.2 164 50.6
BolC4t28553H Brassica oleracea HOM05D007459 ORTHO05D009234 1.4e-34 150.2 164 50.6
C04p70510 Brassica napus HOM05D007459 ORTHO05D009234 1.8e-34 149.8 164 50.6
Nitab4.5_0002553g0080 Nicotiana tabacum HOM05D007459 ORTHO05D009234 2.4e-34 149.4 169 51.5
CARHR138660 Cardamine hirsuta HOM05D007459 ORTHO05D009234 6.9e-34 147.9 169 47.3
Nitab4.5_0013525g0010 Nicotiana tabacum HOM05D007459 ORTHO05D009234 6.9e-34 147.9 171 49.1
Haze_01399 Corylus avellana HOM05D007459 ORTHO05D009234 1.5e-33 146.7 166 49.4
Solyc06g073170.1 Solanum lycopersicum HOM05D007459 ORTHO05D009234 2.6e-33 146.0 168 50.0
PGSC0003DMG400027018 Solanum tuberosum HOM05D007459 ORTHO05D009234 2.6e-33 146.0 168 50.0
BcaB06g29324 Brassica carinata HOM05D007459 ORTHO05D009234 3.4e-33 145.6 164 48.8
Sopen06g029540 Solanum pennellii HOM05D007459 ORTHO05D009234 3.4e-33 145.6 168 49.4
TWI38G0757 Tripterygium wilfordii HOM05D007459 ORTHO05D009234 5.8e-33 144.8 159 49.7
Sc06g0007410 Simmondsia chinensis HOM05D007459 ORTHO05D009234 1.0e-32 144.1 167 47.9
Carub.0004s2600 Capsella rubella HOM05D007459 ORTHO05D009234 1.3e-32 143.7 171 47.4
Thhalv10001662m.g Eutrema salsugineum HOM05D007459 ORTHO05D009234 1.7e-32 143.3 169 47.3
Lsat_1_v5_gn_8_158021 Lactuca sativa HOM05D007459 ORTHO05D009234 1.7e-32 143.3 170 47.1
THA.LOC104805901 Tarenaya hassleriana HOM05D007459 ORTHO05D009234 1.7e-32 143.3 175 46.9
Aa31LG1G25280 Aethionema arabicum HOM05D007459 ORTHO05D009234 2.2e-32 142.9 167 48.5
Nn1g09730 Nelumbo nucifera HOM05D007459 ORTHO05D009234 6.5e-32 141.4 168 45.8
TAR362G1157 Trochodendron aralioides HOM05D007459 ORTHO05D009234 6.5e-32 141.4 170 47.1
C04p70520 Brassica napus HOM05D007459 ORTHO05D009234 1.9e-31 139.8 154 49.4
BolC4t28554H Brassica oleracea HOM05D007459 ORTHO05D009234 1.9e-31 139.8 154 49.4
AL4G42340 Arabidopsis lyrata HOM05D007459 ORTHO05D009234 4.2e-31 138.7 170 47.1
Cc03_g12180 Coffea canephora HOM05D007459 ORTHO05D009234 4.2e-31 138.7 175 45.7
Sp4g25650 Schrenkiella parvula HOM05D007459 ORTHO05D009234 4.2e-31 138.7 172 45.3
HanXRQChr14g0433791 Helianthus annuus HOM05D007459 ORTHO05D009234 5.5e-31 138.3 168 45.8
AT2G43540 Arabidopsis thaliana HOM05D007459 ORTHO05D009234 6.0e-30 134.8 170 45.9
Rhsim09G0013300 Rhododendron simsii HOM05D007459 ORTHO05D009234 1.8e-29 133.3 174 43.1
unitig_85.g27223 Utricularia gibba HOM05D007459 ORTHO05D009234 3.9e-29 132.1 167 43.1
vmacro06567 Vaccinium macrocarpon HOM05D007459 ORTHO05D009234 3.9e-29 132.1 176 43.2
SGA_v2.0_scaffold25G10994 Striga asiatica HOM05D007459 ORTHO05D009234 3.3e-28 129.0 170 45.3
DCAR_028411 Daucus carota HOM05D007459 ORTHO05D009234 2.1e-27 126.3 164 47.0
BcaC02g07168 Brassica carinata HOM05D007459 ORTHO05D009234 6.2e-27 124.8 148 49.3
EL10Ac3g06032 Beta vulgaris HOM05D007459 ORTHO05D009234 1.4e-26 123.6 167 44.9
Migut.N03078 Erythranthe guttata HOM05D007459 ORTHO05D009234 4.0e-26 122.1 167 44.9
Os04g0495300 Oryza sativa ssp. japonica HOM05D007459 ORTHO05D009234 1.5e-25 120.2 164 42.7
HPP92_004524 Vanilla planifolia HOM05D007459 ORTHO05D009234 2.0e-25 119.8 164 42.7
Duzib151G0582 Durio zibethinus HOM05D007459 ORTHO05D009234 1.7e-24 116.7 122 50.8
MBI11_g23942_MAGBIO Magnolia biondii HOM05D004197 ORTHO05D004975 2.2e-24 116.3 157 43.3
Actinidia27099 Actinidia chinensis HOM05D007459 ORTHO05D009234 1.9e-23 113.2 141 45.4
AUR62023818 Chenopodium quinoa HOM05D007459 ORTHO05D009234 9.3e-23 110.9 167 42.5
ClCG07G015090 Citrullus lanatus HOM05D007459 ORTHO05D009234 1.2e-22 110.5 167 41.9
AUR62002368 Chenopodium quinoa HOM05D007459 ORTHO05D009234 4.6e-22 108.6 164 40.9
ATR0743G068 Amborella trichopoda HOM05D007459 ORTHO05D009234 1.8e-21 106.7 171 42.1
Zm00001eb078650 Zea mays HOM05D007459 ORTHO05D009234 8.7e-21 104.4 164 41.5
CDE09G0571 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 5.7e-20 101.7 138 38.4
Eucgr.L02147 Eucalyptus grandis HOM05D007459 ORTHO05D009234 2.8e-19 99.4 146 40.4
HPP92_004533 Vanilla planifolia HOM05D007459 ORTHO05D009234 3.7e-19 99.0 127 43.3
Ah.07g202500 Amaranthus hybridus HOM05D007459 ORTHO05D009234 2.4e-18 96.3 167 38.9
EL10Ac9g22812 Beta vulgaris HOM05D007459 ORTHO05D009234 1.9e-15 86.7 149 40.3
EL10Ac4g10228 Beta vulgaris HOM05D007459 ORTHO05D009234 6.1e-14 81.6 129 37.2
EL10Ac5g11171 Beta vulgaris HOM05D007459 ORTHO05D009234 1.1e-12 77.4 115 38.3
Pp3c17_9330 Physcomitrium patens HOM05D007459 ORTHO05D009234 6.9e-10 68.2 181 30.9
SEGI_40343 Sequoiadendron giganteum HOM05D007459 ORTHO05D009234 5.9e-09 65.1 131 32.1
Mapoly0038s0008 Marchantia polymorpha HOM05D007459 ORTHO05D009234 7.7e-09 64.7 154 31.2
Pp3c3_12780 Physcomitrium patens HOM05D007459 ORTHO05D009234 1.7e-08 63.5 182 29.7
EL10Ac6g13927 Beta vulgaris HOM05D000045 ORTHO05D010054 2.7e-06 56.2 100 37.0
EL10Ac3g06136 Beta vulgaris HOM05D007459 ORTHO05D009234 3.6e-06 55.8 75 42.7


User provided reference genes

Program Settings