Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 4.1e-136 488.4 317 100.0
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 3.1e-107 392.5 315 74.3
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 5.6e-101 371.7 324 74.7
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 6.9e-99 364.8 317 73.2
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 2.0e-98 363.2 317 73.5
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 7.1e-96 354.8 317 70.3
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 1.7e-94 350.1 319 74.9
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 9.0e-91 337.8 317 67.8
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 7.6e-90 334.7 320 65.9
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 8.4e-89 331.3 318 69.5
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 2.4e-88 329.7 320 74.4
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 2.1e-87 326.6 319 64.3
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 4.6e-87 325.5 318 65.4
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 7.9e-87 324.7 325 67.4
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.0e-86 324.3 334 65.3
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 1.0e-86 324.3 321 74.8
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 1.8e-86 323.6 322 60.9
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 1.5e-85 320.5 317 66.9
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 1.5e-85 320.5 320 64.1
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 1.9e-85 320.1 325 63.4
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 2.5e-85 319.7 325 68.6
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 7.4e-85 318.2 317 71.0
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 9.6e-85 317.8 312 66.0
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 1.6e-84 317.0 327 65.7
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 3.6e-84 315.8 324 68.5
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.1e-83 314.3 330 65.2
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 1.4e-83 313.9 325 61.8
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 2.4e-83 313.2 330 63.0
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 4.0e-83 312.4 317 65.0
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 4.0e-83 312.4 317 63.7
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 6.9e-83 311.6 325 67.7
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 1.5e-82 310.5 319 70.8
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 5.8e-82 308.5 321 69.2
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 7.6e-82 308.1 319 69.6
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 2.9e-81 306.2 328 58.2
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 3.8e-81 305.8 320 66.2
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 4.9e-81 305.4 319 69.3
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 1.9e-80 303.5 325 64.9
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 2.4e-80 303.1 321 59.2
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 4.2e-80 302.4 308 70.1
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 5.5e-80 302.0 321 59.2
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 7.1e-80 301.6 321 60.4
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 1.6e-79 300.4 323 58.5
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 2.7e-79 299.7 314 65.9
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 7.9e-79 298.1 317 67.8
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 1.0e-78 297.7 329 62.6
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 1.3e-78 297.4 326 62.9
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 1.3e-78 297.4 313 67.1
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 5.1e-78 295.4 315 62.9
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 5.1e-78 295.4 315 62.9
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 8.7e-78 294.7 320 69.7
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 1.5e-77 293.9 311 63.7
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 1.9e-77 293.5 318 63.8
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 1.9e-77 293.5 320 62.5
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 4.3e-77 292.4 318 58.2
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 7.4e-77 291.6 310 64.8
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 1.1e-75 287.7 326 64.4
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 1.4e-75 287.3 328 66.5
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 1.4e-75 287.3 324 63.9
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 3.1e-75 286.2 312 65.1
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 5.3e-75 285.4 344 55.5
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 6.9e-75 285.0 317 57.7
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 1.5e-74 283.9 323 62.8
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 2.6e-74 283.1 317 60.6
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 3.4e-74 282.7 318 61.0
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 1.3e-73 280.8 324 57.4
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 1.3e-73 280.8 321 60.1
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 1.7e-73 280.4 335 54.6
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 1.7e-73 280.4 335 54.6
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 1.7e-73 280.4 308 69.2
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 2.2e-73 280.0 322 60.6
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 2.9e-73 279.6 325 68.3
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 4.9e-73 278.9 324 59.0
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 4.9e-73 278.9 299 64.2
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 8.4e-73 278.1 315 69.8
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 1.4e-72 277.3 322 53.4
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 1.4e-72 277.3 310 71.3
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 1.4e-72 277.3 310 71.3
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 3.2e-72 276.2 320 64.7
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 4.2e-72 275.8 311 65.0
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 5.5e-72 275.4 304 55.3
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 5.5e-72 275.4 330 62.7
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 1.6e-71 273.9 326 54.6
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 1.6e-71 273.9 330 62.4
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 7.9e-71 271.6 331 58.3
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 7.9e-71 271.6 325 61.8
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 3.0e-70 269.6 322 54.0
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 3.9e-70 269.2 321 59.5
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 5.1e-70 268.9 316 63.9
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 6.7e-70 268.5 319 58.6
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 1.1e-69 267.7 311 67.5
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 1.1e-69 267.7 337 55.2
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 1.9e-69 266.9 343 52.8
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 3.3e-69 266.2 314 57.0
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 5.7e-69 265.4 366 56.0
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 2.1e-68 263.5 334 55.1
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 2.8e-68 263.1 333 51.1
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 1.8e-67 260.4 412 52.2
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 2.6e-66 256.5 324 53.1
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 3.4e-66 256.1 309 65.7
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 3.4e-66 256.1 317 62.1
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 5.9e-66 255.4 319 63.0
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 3.8e-65 252.7 325 62.2
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 5.0e-65 252.3 317 55.2
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 5.0e-65 252.3 321 55.1
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 1.9e-64 250.4 311 59.2
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 7.9e-63 245.0 318 58.2
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 1.3e-62 244.2 329 57.1
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 1.3e-62 244.2 320 55.9
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 2.3e-62 243.4 308 56.2
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 1.5e-61 240.7 308 61.0
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 2.5e-61 240.0 321 56.1
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 3.3e-61 239.6 317 57.7
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 7.4e-61 238.4 329 55.6
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 1.3e-60 237.7 339 54.9
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 1.1e-59 234.6 308 55.2
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 2.4e-59 233.4 317 55.8
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 9.1e-59 231.5 312 58.3
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 1.2e-58 231.1 267 56.9
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 1.2e-58 231.1 245 73.1
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 3.4e-58 229.6 323 57.3
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 5.9e-58 228.8 332 52.1
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 7.7e-58 228.4 306 59.8
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 3.8e-57 226.1 332 53.6
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 8.5e-57 224.9 328 59.8
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 1.4e-56 224.2 318 50.6
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 1.9e-56 223.8 312 56.7
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 2.5e-56 223.4 326 52.1
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 2.5e-56 223.4 313 56.2
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 3.2e-56 223.0 304 55.6
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 5.5e-56 222.2 318 48.1
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 3.9e-54 216.1 316 54.7
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 1.1e-53 214.5 313 57.8
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 1.5e-53 214.2 239 61.1
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 3.7e-52 209.5 311 54.3
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 1.4e-51 207.6 314 55.4
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 3.1e-51 206.5 319 53.0
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 9.1e-51 204.9 306 52.6
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 9.1e-51 204.9 321 48.0
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 1.0e-49 201.4 315 49.2
Phvul.011G052000 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 2.5e-48 196.8 224 62.9
CSS0006211 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.2e-47 194.5 229 58.5
Oeu020438.1 Olea europaea HOM05D003822 ORTHO05D004484 1.2e-47 194.5 133 69.2
PGSC0003DMG400020552 Solanum tuberosum HOM05D003822 ORTHO05D004484 1.6e-47 194.1 133 67.7
Lj2C1109G11 Lonicera japonica HOM05D003822 ORTHO05D004484 1.4e-46 191.0 312 49.7
Gorai.N001500 Gossypium raimondii HOM05D003822 ORTHO05D004484 3.0e-46 189.9 315 48.6
Actinidia11655 Actinidia chinensis HOM05D003822 ORTHO05D004484 4.5e-42 176.0 136 64.0
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 1.1e-40 171.4 297 46.8
Manes.12G058104 Manihot esculenta HOM05D003822 ORTHO05D004484 3.3e-37 159.8 111 72.1
BraA01t04376Z Brassica rapa HOM05D003822 ORTHO05D004484 4.8e-36 156.0 138 57.2
BolC1t05546H Brassica oleracea HOM05D003822 ORTHO05D004484 4.1e-35 152.9 269 50.2
SMO146G0020 Selaginella moellendorffii HOM05D003822 ORTHO05D004484 3.2e-32 143.3 323 42.4
MSTRG.12731 Avicennia marina HOM05D003822 ORTHO05D004484 1.0e-30 138.3 108 61.1
MSTRG.12733 Avicennia marina HOM05D003822 ORTHO05D004484 4.0e-30 136.3 228 46.5
Pp3c11_19790 Physcomitrium patens HOM05D003822 ORTHO05D004484 3.7e-28 129.8 284 51.1
Mapoly0080s0067 Marchantia polymorpha HOM05D003822 ORTHO05D004484 6.3e-28 129.0 321 48.9
unitig_8.g3681 Utricularia gibba HOM05D003822 ORTHO05D004484 1.4e-27 127.9 156 62.2
FAN01G1095 Fragaria x ananassa HOM05D003822 ORTHO05D004484 9.1e-27 125.2 219 52.1
AagrBONN_evm.TU.Sc2ySwM_368.3329 Anthoceros agrestis HOM05D003822 ORTHO05D004484 1.2e-26 124.8 334 42.2
CSS0030404 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 5.0e-25 119.4 83 72.3
Oeu020439.1 Olea europaea HOM05D003822 ORTHO05D004484 1.9e-24 117.5 84 73.8
CBR_g38951 Chara braunii HOM05D003822 ORTHO05D004484 3.2e-24 116.7 304 48.7
Atru.chr4.1339 Acer truncatum HOM05D003822 ORTHO05D004484 1.6e-23 114.4 78 69.2
CARHR082240 Cardamine hirsuta HOM05D003822 ORTHO05D004484 5.2e-22 109.4 196 63.8
FAN10G3558 Fragaria x ananassa HOM05D003822 ORTHO05D046505 4.4e-21 106.3 79 70.9
FvH4_7g08180 Fragaria vesca HOM05D003822 ORTHO05D046505 1.7e-20 104.4 78 70.5
Eucgr.B03613 Eucalyptus grandis HOM05D003822 ORTHO05D004484 1.6e-18 97.8 67 73.1
Eucgr.C02476 Eucalyptus grandis HOM05D003822 ORTHO05D004484 1.6e-18 97.8 63 74.6
Gohir.A07G157900 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.0e-17 95.1 134 47.8
Thecc.04G171800 Theobroma cacao HOM05D003822 ORTHO05D004484 1.1e-16 91.7 58 69.0
FAN06G0586 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.5e-16 91.3 93 57.0
CARHR082220 Cardamine hirsuta HOM05D003822 ORTHO05D004484 1.4e-14 84.7 83 56.6
Cre13.g574700 Chlamydomonas reinhardtii HOM05D003822 ORTHO05D004484 1.8e-14 84.3 64 59.4
Hma1.2p1_0161F.1_g071790 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 5.2e-14 82.8 198 36.4
SEGI_40649 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 4.9e-12 76.3 95 53.7
FAN01G2016 Fragaria x ananassa HOM05D003822 ORTHO05D004484 3.2e-11 73.6 44 84.1
MCO15G241 Micromonas commoda HOM05D003822 ORTHO05D004484 7.0e-11 72.4 298 40.3
SEGI_02285 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 9.2e-11 72.0 93 48.4
FAN06G2565 Fragaria x ananassa HOM05D003822 ORTHO05D001690 1.2e-10 71.6 87 51.7
ATR0737G020 Amborella trichopoda HOM05D003822 ORTHO05D004484 8.6e-09 65.5 83 48.2
CBR_g50337 Chara braunii HOM05D003822 ORTHO05D004484 1.2e-07 61.6 263 49.0
Zm00001eb392350 Zea mays HOM05D000367 ORTHO05D001438 2.1e-07 60.8 44 75.0
SEGI_25865 Sequoiadendron giganteum HOM05D000010 ORTHO05D004484 8.9e-06 55.5 76 47.4


User provided reference genes

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