Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 2.5e-228 795.0 388 100.0
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 2.9e-184 648.7 390 81.8
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 8.2e-179 630.6 396 80.3
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 7.2e-175 617.5 386 79.8
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 3.7e-163 578.6 401 72.8
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 5.9e-161 571.2 381 74.5
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 2.9e-160 568.9 393 73.0
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 8.0e-142 507.7 358 70.4
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 4.4e-132 475.3 380 64.5
arahy.Tifrunner.gnm1.ann1.CA0DYB Arachis hypogaea HOM05D001295 ORTHO05D005319 2.3e-128 463.0 382 62.8
arahy.Tifrunner.gnm1.ann1.1HI5HP Arachis hypogaea HOM05D001295 ORTHO05D005319 6.2e-126 454.9 382 62.3
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 6.2e-126 454.9 392 59.7
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 9.8e-124 447.6 387 59.2
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 2.3e-120 436.4 386 59.1
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 4.3e-119 432.2 385 59.0
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 9.5e-119 431.0 390 55.9
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 1.2e-118 430.6 317 69.1
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 8.1e-118 427.9 384 57.6
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 3.1e-117 426.0 384 57.0
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 8.9e-117 424.5 361 59.6
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 1.5e-116 423.7 361 59.6
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 2.6e-116 422.9 393 56.0
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 4.4e-116 422.2 384 57.8
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 3.7e-115 419.1 386 57.3
TAR633G1947 Trochodendron aralioides HOM05D001295 ORTHO05D005319 8.3e-115 417.9 379 57.8
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 1.4e-114 417.2 385 56.1
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 2.4e-114 416.4 384 57.0
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 2.1e-113 413.3 384 55.2
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 6.0e-113 411.8 384 56.2
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 1.3e-112 410.6 404 54.7
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 3.0e-112 409.5 386 55.7
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 1.5e-111 407.1 390 54.9
Nn1g09559 Nelumbo nucifera HOM05D001295 ORTHO05D005319 5.6e-111 405.2 335 59.1
Oeu020777.1 Olea europaea HOM05D001295 ORTHO05D005319 2.8e-110 402.9 389 53.0
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 1.4e-109 400.6 386 53.9
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 3.4e-108 396.0 362 56.1
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 5.8e-108 395.2 385 54.5
Migut.G01307 Erythranthe guttata HOM05D001295 ORTHO05D005319 3.8e-107 392.5 381 53.5
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 4.9e-107 392.1 384 54.9
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 6.4e-107 391.7 387 54.0
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 1.9e-106 390.2 389 53.2
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 2.1e-105 386.7 385 50.9
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 3.9e-104 382.5 392 51.0
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 3.9e-104 382.5 444 48.9
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 3.6e-102 375.9 388 50.3
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 8.1e-102 374.8 486 45.5
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 1.1e-101 374.4 384 51.3
Thhalv10001762m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 1.8e-101 373.6 380 48.9
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 3.4e-100 369.4 383 50.1
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 6.4e-99 365.2 451 45.9
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 2.4e-98 363.2 413 48.2
BraA05t19365Z Brassica rapa HOM05D001295 ORTHO05D005319 5.4e-98 362.1 395 48.4
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 8.7e-96 354.8 387 48.3
Lalb_Chr14g0372571 Lupinus albus HOM05D001295 ORTHO05D005319 8.7e-96 354.8 283 62.2
Nitab4.5_0001586g0250 Nicotiana tabacum HOM05D001295 ORTHO05D005319 1.1e-95 354.4 342 53.5
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 2.5e-95 353.2 370 50.8
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 2.5e-95 353.2 379 50.1
Gohir.D02G111400 Gossypium hirsutum HOM05D001295 ORTHO05D005319 3.3e-95 352.8 384 50.3
Lalb_Chr22g0352051 Lupinus albus HOM05D001295 ORTHO05D005319 3.2e-90 336.3 276 65.2
Gohir.A02G093300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 7.1e-90 335.1 384 49.5
BcaC02g12392 Brassica carinata HOM05D001295 ORTHO05D005319 1.2e-89 334.3 359 48.5
C04p04470 Brassica napus HOM05D001295 ORTHO05D005319 1.2e-89 334.3 359 48.5
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 2.1e-89 333.6 360 48.6
BolC4t22080H Brassica oleracea HOM05D001295 ORTHO05D005319 3.5e-89 332.8 359 48.2
A05p03770 Brassica napus HOM05D001295 ORTHO05D005319 8.7e-88 328.2 367 47.4
Migut.G01326 Erythranthe guttata HOM05D001295 ORTHO05D005319 8.7e-88 328.2 294 55.8
EL10Ac3g06020 Beta vulgaris HOM05D001295 ORTHO05D005319 1.9e-87 327.0 408 47.3
BcaB02g08938 Brassica carinata HOM05D001295 ORTHO05D005319 3.3e-87 326.2 364 47.3
Migut.G01305 Erythranthe guttata HOM05D001295 ORTHO05D005319 4.3e-87 325.9 381 48.0
MELO3C022439.2 Cucumis melo HOM05D001295 ORTHO05D005319 1.3e-86 324.3 378 47.4
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 9.0e-85 318.2 413 43.6
Rhsim09G0020700 Rhododendron simsii HOM05D001295 ORTHO05D005319 2.5e-82 310.1 424 42.7
QL10p051666 Quercus lobata HOM05D001295 ORTHO05D005319 1.5e-79 300.8 268 59.3
AUR62023829 Chenopodium quinoa HOM05D001295 ORTHO05D005319 3.7e-78 296.2 387 42.6
RhsimUnG0137700 Rhododendron simsii HOM05D001295 ORTHO05D005319 1.8e-77 293.9 287 53.0
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 5.3e-77 292.4 283 56.9
AagrBONN_evm.TU.Sc2ySwM_228.190 Anthoceros agrestis HOM05D001295 ORTHO05D005319 6.9e-77 292.0 405 41.7
Eucgr.H00340 Eucalyptus grandis HOM05D001295 ORTHO05D005319 1.6e-73 280.8 291 54.0
Mapoly0209s0009 Marchantia polymorpha HOM05D001295 ORTHO05D005319 6.1e-73 278.9 385 39.7
Actinidia34573 Actinidia chinensis HOM05D001295 ORTHO05D005319 3.9e-72 276.2 279 53.0
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 4.3e-71 272.7 280 52.5
Aqoxy5G00377 Aquilegia oxysepala HOM05D001295 ORTHO05D005319 9.7e-71 271.6 279 49.8
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 2.2e-70 270.4 301 46.8
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 1.8e-69 267.3 366 43.7
MSTRG.4291 Avicennia marina HOM05D001295 ORTHO05D005319 2.2e-67 260.4 276 50.7
SMO337G0100 Selaginella moellendorffii HOM05D001295 ORTHO05D005319 1.1e-66 258.1 269 51.3
vmacro00676 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 3.9e-64 249.6 213 59.6
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 1.1e-61 241.5 371 41.8
unitig_37.g12026 Utricularia gibba HOM05D001295 ORTHO05D005319 7.7e-60 235.3 214 53.3
TWI15G0408 Tripterygium wilfordii HOM05D001295 ORTHO05D005319 4.7e-57 226.1 276 46.0
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 6.1e-57 225.7 285 42.8
ECA240G1882 Erigeron canadensis HOM05D001295 ORTHO05D005319 2.6e-55 220.3 189 55.0
COL.COLO4_21796 Corchorus olitorius HOM05D001295 ORTHO05D005319 1.1e-53 214.9 267 44.9
Ciclev10021666m.g Citrus clementina HOM05D001295 ORTHO05D005319 2.4e-53 213.8 273 44.7
Sabra07G0107500 Salix brachista HOM05D001295 ORTHO05D005319 1.2e-52 211.5 269 45.4
Gohir.D08G098300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 2.0e-52 210.7 254 46.1
Gorai.004G105900 Gossypium raimondii HOM05D001295 ORTHO05D005319 4.5e-52 209.5 254 45.7
RcHm_v2.0_Chr6g0292651 Rosa chinensis HOM05D001295 ORTHO05D005319 1.5e-50 204.5 250 46.4
FAN24G0827 Fragaria x ananassa HOM05D001295 ORTHO05D005319 4.2e-50 203.0 254 47.2
FAN27G1301 Fragaria x ananassa HOM05D001295 ORTHO05D005319 3.6e-49 199.9 252 46.0
FvH4_2g24830 Fragaria vesca HOM05D001295 ORTHO05D005319 8.0e-49 198.7 254 46.9
Sabra07G0119300 Salix brachista HOM05D001295 ORTHO05D005319 8.8e-48 195.3 260 43.8
Zm00001eb064040 Zea mays HOM05D001295 ORTHO05D005319 4.4e-47 193.0 278 38.8
Sed0000422 Sechium edule HOM05D001295 ORTHO05D005319 1.3e-46 191.4 242 44.2
Manes.04G047700 Manihot esculenta HOM05D001295 ORTHO05D005319 1.1e-45 188.3 239 46.0
THA.LOC104820845 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 1.1e-45 188.3 252 46.0
AL3G12950 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 1.4e-45 188.0 262 42.4
CsaV3_4G002500 Cucumis sativus L. HOM05D001295 ORTHO05D005319 2.4e-45 187.2 239 47.3
FAN15G1214 Fragaria x ananassa HOM05D001295 ORTHO05D005319 1.2e-44 184.9 252 45.2
Thhalv10021391m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 7.7e-44 182.2 249 42.6
Gohir.A08G092500 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.0e-43 181.8 253 43.1
CARHR077360 Cardamine hirsuta HOM05D001295 ORTHO05D005319 1.3e-43 181.4 262 41.6
BraA05t23124Z Brassica rapa HOM05D001295 ORTHO05D005319 1.7e-43 181.0 262 43.5
AT3G03320 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 2.9e-43 180.3 249 42.2
Lj3C135G1 Lonicera japonica HOM05D001295 ORTHO05D005319 3.8e-43 179.9 199 50.8
BolC5t35010H Brassica oleracea HOM05D001295 ORTHO05D005319 8.5e-43 178.7 262 42.7
Sp3g02350 Schrenkiella parvula HOM05D001295 ORTHO05D005319 1.9e-42 177.6 251 43.8
C05p63460 Brassica napus HOM05D001295 ORTHO05D005319 2.5e-42 177.2 262 42.4
Lj3g0015879 Lotus japonicus HOM05D001295 ORTHO05D005319 2.5e-42 177.2 157 60.5
A05p43870 Brassica napus HOM05D001295 ORTHO05D005319 3.2e-42 176.8 262 42.7
Ciclev10021418m.g Citrus clementina HOM05D001295 ORTHO05D005319 5.5e-42 176.0 288 37.2
ClCG07G011710 Citrullus lanatus HOM05D001295 ORTHO05D005319 9.4e-42 175.3 238 46.2
Carub.0003s0249 Capsella rubella HOM05D001295 ORTHO05D005319 1.2e-41 174.9 262 40.5
BcaC05g30303 Brassica carinata HOM05D001295 ORTHO05D005319 2.1e-41 174.1 256 41.0
Migut.G01331 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.8e-40 171.0 198 48.5
Pp3c13_1370 Physcomitrium patens HOM05D001295 ORTHO05D005319 8.8e-40 168.7 287 37.3
Thecc.04G173200 Theobroma cacao HOM05D001295 ORTHO05D005319 1.5e-39 167.9 197 45.7
Sabra07G0119200 Salix brachista HOM05D001295 ORTHO05D005319 3.7e-38 163.3 208 47.6
Aa31LG5G13780 Aethionema arabicum HOM05D001295 ORTHO05D005319 7.0e-37 159.1 279 37.6
Cpa.g.sc9.324 Carica papaya HOM05D001295 ORTHO05D005319 1.7e-35 154.5 129 60.5
AT2G43465 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 5.0e-35 152.9 209 41.6
Haze_01445 Corylus avellana HOM05D001295 ORTHO05D005319 5.5e-34 149.4 165 52.1
C01p44730 Brassica napus HOM05D001295 ORTHO05D005319 1.0e-32 145.2 325 29.5
Hma1.2p1_0401F.1_g144800 Hydrangea macrophylla HOM05D001295 ORTHO05D005319 1.4e-32 144.8 121 61.2
Glyma.13G345802 Glycine max HOM05D001295 ORTHO05D005319 2.0e-31 141.0 128 57.8
Haze_01447 Corylus avellana HOM05D001295 ORTHO05D005319 1.8e-29 134.4 72 79.2
Lalb_Chr14g0372561 Lupinus albus HOM05D001295 ORTHO05D005319 9.1e-29 132.1 64 85.9
A09p42860 Brassica napus HOM05D001295 ORTHO05D005319 3.5e-28 130.2 262 32.8
SalBow5G4879 Salvia bowleyana HOM05D001295 ORTHO05D005319 2.5e-26 124.0 157 44.6
vmacro00675 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 1.2e-25 121.7 167 42.5
BolC2t06464H Brassica oleracea HOM05D001295 ORTHO05D005319 2.3e-24 117.5 295 28.8
Medtr2g027210 Medicago truncatula HOM05D001295 ORTHO05D005319 5.2e-16 89.7 83 56.6
Lj3A83T16 Lonicera japonica HOM05D001295 ORTHO05D005319 1.1e-13 82.0 65 60.0
AL4G36180 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 1.0e-11 75.5 126 42.9
Sabra17G0001700 Salix brachista HOM05D001295 ORTHO05D005319 1.1e-10 72.0 142 35.9
Cre16.g668650 Chlamydomonas reinhardtii HOM05D001295 ORTHO05D005319 9.5e-10 68.9 139 34.5
CBR_g21778 Chara braunii HOM05D001295 ORTHO05D005319 2.1e-09 67.8 126 34.9
Sabra17G0000500 Salix brachista HOM05D001295 ORTHO05D005319 6.2e-09 66.2 84 42.9
Sabra17G0015200 Salix brachista HOM05D001295 ORTHO05D005319 1.8e-08 64.7 177 31.6
MELO3C001160.2 Cucumis melo HOM05D001295 ORTHO05D005319 2.3e-08 64.3 56 51.8
Sabra17G0001500 Salix brachista HOM05D001295 ORTHO05D005319 2.3e-08 64.3 81 42.0


User provided reference genes

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