Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 1.5e-245 852.4 427 100.0
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 2.5e-173 612.5 465 72.3
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 3.4e-162 575.5 432 72.7
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 7.4e-157 557.8 393 75.1
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 3.4e-125 452.6 361 68.4
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 2.6e-117 426.4 429 55.5
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 2.4e-115 419.9 429 54.1
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 2.0e-114 416.8 336 67.3
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 6.8e-110 401.7 398 56.5
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 4.0e-102 375.9 306 62.7
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 7.1e-99 365.2 374 51.9
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 6.0e-98 362.1 397 50.1
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 3.3e-96 356.3 426 47.4
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 4.3e-96 355.9 311 58.5
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 2.4e-94 350.1 372 52.4
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 4.0e-94 349.4 385 49.9
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 5.2e-94 349.0 328 57.6
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 3.4e-93 346.3 385 49.4
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 4.9e-92 342.4 305 58.4
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 5.8e-85 318.9 396 46.2
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 1.3e-84 317.8 297 55.6
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 4.2e-83 312.8 354 47.5
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 2.7e-82 310.1 396 46.0
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 6.0e-82 308.9 403 44.2
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 1.1e-80 304.7 306 53.6
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 2.5e-80 303.5 377 46.4
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 6.2e-79 298.9 358 46.1
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 1.4e-78 297.7 419 42.2
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.8e-78 297.4 314 47.5
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 1.8e-78 297.4 381 44.4
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 2.4e-78 297.0 314 48.4
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 6.9e-78 295.4 306 50.3
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.5e-77 294.3 322 48.8
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 7.6e-77 292.0 362 45.9
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 7.6e-77 292.0 349 45.8
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.3e-76 291.2 316 48.4
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 1.3e-76 291.2 321 47.4
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 8.4e-76 288.5 412 42.7
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 1.4e-75 287.7 316 48.4
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 2.4e-75 287.0 385 42.6
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 3.2e-75 286.6 330 46.4
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 1.0e-73 281.6 309 46.3
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 3.9e-73 279.6 306 49.0
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 1.5e-72 277.7 306 47.7
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 1.9e-72 277.3 326 46.0
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 1.9e-72 277.3 351 45.0
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 2.5e-72 276.9 352 43.8
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 6.2e-71 272.3 310 46.8
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 2.4e-70 270.4 345 43.5
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 6.9e-70 268.9 310 47.1
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 1.5e-69 267.7 316 45.6
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 2.6e-69 266.9 299 45.8
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 4.5e-69 266.2 309 44.7
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.3e-68 264.6 305 46.2
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 1.3e-68 264.6 303 45.2
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 3.8e-68 263.1 311 47.3
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 1.1e-67 261.5 271 51.7
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 1.4e-67 261.2 305 47.5
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 1.9e-67 260.8 320 44.4
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 1.9e-67 260.8 346 41.3
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 5.5e-67 259.2 309 43.4
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 4.6e-66 256.1 321 44.5
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 1.0e-65 255.0 345 40.3
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 1.3e-65 254.6 329 42.9
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 3.0e-65 253.4 326 43.3
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 1.1e-64 251.5 284 50.4
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 1.1e-64 251.5 336 41.4
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 3.3e-64 250.0 274 48.2
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 9.6e-64 248.4 404 38.1
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 1.6e-63 247.7 306 44.4
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 6.2e-63 245.7 271 48.3
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.1e-62 245.0 271 48.3
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 1.8e-62 244.2 307 43.6
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 6.9e-62 242.3 414 38.9
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 2.6e-61 240.4 305 44.6
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 1.0e-60 238.4 303 40.3
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.1e-59 235.0 331 41.4
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 4.2e-59 233.0 382 38.5
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 7.1e-59 232.3 311 43.1
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 1.2e-58 231.5 323 40.9
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 3.5e-58 229.9 409 36.7
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 6.1e-58 229.2 332 40.1
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 6.1e-58 229.2 332 39.5
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 2.3e-57 227.3 339 38.3
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 3.0e-57 226.9 308 41.6
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 3.9e-57 226.5 423 35.9
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.5e-56 224.6 306 41.5
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 1.5e-56 224.6 369 36.3
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 4.3e-56 223.0 367 39.0
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 5.7e-56 222.6 264 46.2
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 7.4e-56 222.2 397 34.5
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 7.4e-56 222.2 341 36.7
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 1.6e-55 221.1 448 31.7
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 6.3e-55 219.2 445 34.6
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 8.2e-55 218.8 303 40.3
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 8.2e-55 218.8 340 37.6
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 1.1e-54 218.4 308 41.9
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.1e-54 218.4 224 51.3
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 9.0e-54 215.3 310 41.0
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 1.5e-53 214.5 336 38.4
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 5.9e-53 212.6 331 38.1
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 1.7e-52 211.1 302 39.4
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 1.1e-51 208.4 325 38.8
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 1.4e-51 208.0 339 38.3
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 9.4e-51 205.3 337 38.3
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 1.2e-50 204.9 361 34.9
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 2.7e-50 203.8 439 34.2
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 2.3e-49 200.7 343 36.2
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 2.3e-49 200.7 214 50.0
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 5.1e-49 199.5 352 36.9
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 2.5e-48 197.2 337 35.0
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 7.4e-48 195.7 337 34.4
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 9.7e-48 195.3 338 35.5
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 1.8e-46 191.0 312 39.7
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 3.8e-44 183.3 270 39.6
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 8.5e-44 182.2 270 38.9
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 1.9e-43 181.0 277 38.6
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 9.4e-43 178.7 323 36.8
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 4.7e-42 176.4 298 37.2
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 2.0e-37 161.0 320 36.6
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.9e-35 154.5 186 46.8
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.9e-35 154.5 186 46.8
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 7.2e-35 152.5 409 29.8
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 5.7e-32 142.9 261 36.8
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 2.2e-31 141.0 186 40.3
Glyma.13G343800 Glycine max HOM05D004076 ORTHO05D004606 5.3e-30 136.3 122 61.5
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 8.5e-28 129.0 280 31.8
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 7.5e-24 115.9 238 33.6
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 1.8e-22 111.3 189 37.0
Medtr2g098740 Medicago truncatula HOM05D004076 ORTHO05D004606 1.6e-21 108.2 66 81.8
Medtr2g098780 Medicago truncatula HOM05D004076 ORTHO05D004606 1.6e-21 108.2 66 83.3
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 2.2e-20 104.4 139 46.0
Lj8A15T44 Lonicera japonica HOM05D004076 ORTHO05D004606 8.5e-20 102.4 89 50.6
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 3.6e-18 97.1 174 35.1
Medtr2g022300 Medicago truncatula HOM05D004076 ORTHO05D004606 5.7e-16 89.7 46 91.3
SHI23539 Sapria himalayana HOM05D004076 ORTHO05D004606 7.2e-11 72.8 82 53.7
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 1.2e-10 72.0 177 29.9
AUR62015396 Chenopodium quinoa HOM05D004076 ORTHO05D004606 2.4e-06 57.8 47 46.8
SEGI_07468 Sequoiadendron giganteum HOM05D035915 ORTHO05D385826 7.0e-06 56.2 54 37.0


User provided reference genes

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