Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g098650 Medicago truncatula HOM05D005795 ORTHO05D007200 1.6e-162 576.2 334 100.0
Ca_01264_v3 Cicer arietinum L. HOM05D005795 ORTHO05D007200 3.7e-143 511.9 334 88.9
TPR.G18871 Trifolium pratense HOM05D005795 ORTHO05D007200 3.3e-136 488.8 334 85.9
Glyma.15G030700 Glycine max HOM05D005795 ORTHO05D007200 1.5e-125 453.4 339 79.4
Lj3g0002937 Lotus japonicus HOM05D005795 ORTHO05D007200 3.4e-125 452.2 327 81.7
arahy.Tifrunner.gnm1.ann1.LQCR4Y Arachis hypogaea HOM05D005795 ORTHO05D007200 7.7e-125 451.1 332 76.5
VMungo1080G0355 Vigna mungo HOM05D005795 ORTHO05D007200 1.6e-122 443.4 345 77.1
Glyma.13G343600 Glycine max HOM05D005795 ORTHO05D007200 6.7e-121 438.0 363 69.1
Lalb_Chr22g0352181 Lupinus albus HOM05D005795 ORTHO05D007200 2.6e-117 426.0 324 75.6
CiPaw.01G101200 Carya illinoinensis HOM05D005795 ORTHO05D007200 3.2e-107 392.5 323 69.7
Phvul.005G152400 Phaseolus vulgaris HOM05D005795 ORTHO05D007200 7.2e-107 391.3 340 71.8
Ciclev10021008m.g Citrus clementina HOM05D005795 ORTHO05D007200 1.2e-106 390.6 328 69.5
Thecc.04G314000 Theobroma cacao HOM05D005795 ORTHO05D007200 6.7e-105 384.8 331 68.3
ClCG07G015610 Citrullus lanatus HOM05D005795 ORTHO05D007200 1.5e-104 383.6 324 68.2
CSS0047301 Camellia sinensis var. sinensis HOM05D005795 ORTHO05D007200 2.0e-104 383.3 327 67.9
Duzib212G0505 Durio zibethinus HOM05D005795 ORTHO05D007200 4.4e-104 382.1 330 67.3
Rhsim02G0076300 Rhododendron simsii HOM05D005795 ORTHO05D007200 9.7e-104 380.9 325 64.9
TWI38G2022 Tripterygium wilfordii HOM05D005795 ORTHO05D007200 8.2e-103 377.9 324 69.1
MELO3C017720.2 Cucumis melo HOM05D005795 ORTHO05D007200 2.4e-102 376.3 322 66.8
Manes.04G041300 Manihot esculenta HOM05D005795 ORTHO05D007200 9.1e-102 374.4 324 67.6
Actinidia35971 Actinidia chinensis HOM05D005795 ORTHO05D007200 2.0e-101 373.2 328 65.2
COL.COLO4_21665 Corchorus olitorius HOM05D005795 ORTHO05D007200 2.0e-101 373.2 330 67.3
Dinv44196 Davidia involucrata HOM05D005795 ORTHO05D007200 2.0e-101 373.2 329 65.3
RcHm_v2.0_Chr4g0407031 Rosa chinensis HOM05D005795 ORTHO05D007200 2.0e-101 373.2 328 69.2
Actinidia11305 Actinidia chinensis HOM05D005795 ORTHO05D007200 5.9e-101 371.7 328 67.1
CsaV3_4G003310 Cucumis sativus L. HOM05D005795 ORTHO05D007200 2.2e-100 369.8 322 67.1
Cfa015145 Carpinus fangiana HOM05D005795 ORTHO05D007200 1.9e-99 366.7 326 69.0
Haze_01529 Corylus avellana HOM05D005795 ORTHO05D007200 2.5e-99 366.3 326 67.5
FvH4_4g10680 Fragaria vesca HOM05D005795 ORTHO05D007200 4.2e-99 365.5 328 68.0
FAN07G0438 Fragaria x ananassa HOM05D005795 ORTHO05D007200 4.2e-99 365.5 328 67.4
CANSAT78G1297 Cannabis sativa HOM05D005795 ORTHO05D007200 7.2e-99 364.8 329 62.6
Sabra07G0103500 Salix brachista HOM05D005795 ORTHO05D007200 1.2e-98 364.0 324 63.3
HPP92_013540 Vanilla planifolia HOM05D005795 ORTHO05D007200 2.1e-98 363.2 318 61.9
Sed0015939 Sechium edule HOM05D005795 ORTHO05D007200 2.7e-98 362.8 324 65.1
Nn1g09576 Nelumbo nucifera HOM05D005795 ORTHO05D007200 4.7e-98 362.1 329 63.5
Gohir.D05G287100 Gossypium hirsutum HOM05D005795 ORTHO05D007200 8.0e-98 361.3 328 66.2
Gohir.A05G286100 Gossypium hirsutum HOM05D005795 ORTHO05D007200 5.2e-97 358.6 328 65.5
Gorai.009G302100 Gossypium raimondii HOM05D005795 ORTHO05D007200 2.6e-96 356.3 328 65.5
THA.LOC104803670 Tarenaya hassleriana HOM05D005795 ORTHO05D007200 7.5e-96 354.8 324 65.1
PGR083G1909 Punica granatum HOM05D005795 ORTHO05D007200 1.8e-94 350.1 320 66.2
Aa31LG10G13730 Aethionema arabicum HOM05D005795 ORTHO05D007200 5.4e-94 348.6 319 65.8
QL10p048508 Quercus lobata HOM05D005795 ORTHO05D007200 7.0e-94 348.2 327 63.6
Atru.chr3.1532 Acer truncatum HOM05D005795 ORTHO05D007200 1.6e-93 347.1 330 63.0
Atru.chr3.1535 Acer truncatum HOM05D005795 ORTHO05D007200 1.6e-93 347.1 330 63.0
Lsat_1_v5_gn_6_55280 Lactuca sativa HOM05D005795 ORTHO05D007200 2.2e-92 343.2 350 57.4
PSO732G0188 Papaver somniferum HOM05D005795 ORTHO05D007200 3.8e-92 342.4 324 63.6
Cc08_g05980 Coffea canephora HOM05D005795 ORTHO05D007200 5.0e-92 342.0 326 62.9
HanXRQChr07g0186111 Helianthus annuus HOM05D005795 ORTHO05D007200 6.5e-92 341.7 332 61.1
EL10Ac3g05921 Beta vulgaris HOM05D005795 ORTHO05D007200 1.1e-91 340.9 326 63.8
Lsat_1_v5_gn_9_14160 Lactuca sativa HOM05D005795 ORTHO05D007200 1.5e-91 340.5 350 57.1
Thhalv10025709m.g Eutrema salsugineum HOM05D005795 ORTHO05D007200 1.9e-91 340.1 326 64.4
CARHR169760 Cardamine hirsuta HOM05D005795 ORTHO05D007200 3.2e-91 339.3 324 64.2
AL5G41280 Arabidopsis lyrata HOM05D005795 ORTHO05D007200 4.2e-91 339.0 325 64.3
PSO675G7496 Papaver somniferum HOM05D005795 ORTHO05D007200 4.2e-91 339.0 324 63.0
AUR62002291 Chenopodium quinoa HOM05D005795 ORTHO05D007200 7.2e-91 338.2 326 63.8
SalBow3G4461 Salvia bowleyana HOM05D005795 ORTHO05D007200 9.4e-91 337.8 330 60.6
Cpa.g.sc41.30 Carica papaya HOM05D005795 ORTHO05D007200 2.7e-90 336.3 331 63.1
AT3G59380 Arabidopsis thaliana HOM05D005795 ORTHO05D007200 3.6e-90 335.9 325 63.7
Psat1g007200 Pisum sativum HOM05D005795 ORTHO05D007200 4.7e-90 335.5 208 80.3
Prupe.1G191500 Prunus persica HOM05D005795 ORTHO05D007200 4.7e-90 335.5 327 64.2
MSTRG.9769 Avicennia marina HOM05D005795 ORTHO05D007200 8.0e-90 334.7 334 61.7
C01p27420 Brassica napus HOM05D005795 ORTHO05D007200 1.0e-89 334.3 326 63.8
AUR62015400 Chenopodium quinoa HOM05D005795 ORTHO05D007200 1.0e-89 334.3 326 61.3
Cc05_g13970 Coffea canephora HOM05D005795 ORTHO05D007200 1.0e-89 334.3 326 62.6
GSVIVG01010747001 Vitis vinifera HOM05D005795 ORTHO05D007200 1.8e-89 333.6 323 62.2
Peaxi162Scf00375g00059 Petunia axillaris HOM05D005795 ORTHO05D007200 2.0e-88 330.1 319 62.1
Carub.0005s2612 Capsella rubella HOM05D005795 ORTHO05D007200 3.4e-88 329.3 327 62.7
ECA233G5655 Erigeron canadensis HOM05D005795 ORTHO05D007200 4.4e-88 328.9 323 62.2
Eucgr.A00077 Eucalyptus grandis HOM05D005795 ORTHO05D007200 7.5e-88 328.2 339 61.7
SGA_v2.0_scaffold375G50253 Striga asiatica HOM05D005795 ORTHO05D007200 9.8e-88 327.8 325 61.5
Hund03150 Selenicereus undatus HOM05D005795 ORTHO05D007200 1.3e-87 327.4 324 59.9
Lj6A56T30 Lonicera japonica HOM05D005795 ORTHO05D007200 1.7e-87 327.0 322 62.4
vmacro15646 Vaccinium macrocarpon HOM05D005795 ORTHO05D007200 1.4e-86 323.9 337 50.4
Zm00001eb102710 Zea mays HOM05D005795 ORTHO05D007200 1.4e-86 323.9 316 63.9
SGA_v2.0_scaffold136G34981 Striga asiatica HOM05D005795 ORTHO05D007200 9.2e-86 321.2 325 60.3
DCAR_003909 Daucus carota HOM05D005795 ORTHO05D007200 1.6e-85 320.5 323 59.4
Os09g0514400 Oryza sativa ssp. japonica HOM05D005795 ORTHO05D007200 3.5e-85 319.3 327 61.2
Potri.007G127500 Populus trichocarpa HOM05D005795 ORTHO05D007200 1.7e-84 317.0 326 58.6
MD04G1007300 Malus domestica HOM05D005795 ORTHO05D007200 2.3e-84 316.6 327 61.2
Aqoxy2G04090 Aquilegia oxysepala HOM05D005795 ORTHO05D007200 8.0e-82 308.1 323 58.5
ATR0743G276 Amborella trichopoda HOM05D005795 ORTHO05D007200 1.4e-81 307.4 327 58.7
Ah.13g072920 Amaranthus hybridus HOM05D005795 ORTHO05D007200 6.8e-81 305.1 326 53.7
Sp7g13790 Schrenkiella parvula HOM05D005795 ORTHO05D007200 4.9e-79 298.9 320 58.4
Sopen06g029770 Solanum pennellii HOM05D005795 ORTHO05D007200 5.4e-78 295.4 321 58.3
BcaC09g50250 Brassica carinata HOM05D005795 ORTHO05D007200 7.0e-78 295.0 298 64.1
Migut.G00958 Erythranthe guttata HOM05D005795 ORTHO05D007200 1.2e-77 294.3 319 58.6
Solyc06g073390.3 Solanum lycopersicum HOM05D005795 ORTHO05D007200 1.3e-76 290.8 316 58.5
BcaNung00265 Brassica carinata HOM05D005795 ORTHO05D007200 8.6e-76 288.1 326 58.6
A01p22030 Brassica napus HOM05D005795 ORTHO05D007200 8.6e-76 288.1 326 58.6
BraA01t02109Z Brassica rapa HOM05D005795 ORTHO05D007200 8.6e-76 288.1 326 58.6
PGSC0003DMG400027009 Solanum tuberosum HOM05D005795 ORTHO05D007200 9.5e-75 284.6 316 57.6
unitig_22.g5744 Utricularia gibba HOM05D005795 ORTHO05D007200 1.2e-74 284.3 324 55.9
CDE08G0443 Ceratophyllum demersum HOM05D005795 ORTHO05D007200 4.1e-70 269.2 325 54.8
Nitab4.5_0003132g0100 Nicotiana tabacum HOM05D005795 ORTHO05D007200 3.3e-67 259.6 324 42.6
CAN.G65.180 Capsicum annuum HOM05D005795 ORTHO05D007200 5.6e-67 258.8 282 59.9
TAR633G0878 Trochodendron aralioides HOM05D005795 ORTHO05D007200 4.7e-66 255.8 207 57.5
Pp3c9_24240 Physcomitrium patens HOM05D005795 ORTHO05D007200 4.0e-65 252.7 313 55.0
FAN12G2789 Fragaria x ananassa HOM05D005795 ORTHO05D007200 1.2e-64 251.1 208 57.7
FAN12G0695 Fragaria x ananassa HOM05D005795 ORTHO05D007200 4.9e-63 245.7 196 58.7
Hma1.2p1_0754F.1_g213060 Hydrangea macrophylla HOM05D005795 ORTHO05D007200 6.4e-63 245.4 167 65.3
Eucgr.A00272 Eucalyptus grandis HOM05D005795 ORTHO05D007200 2.4e-62 243.4 210 56.7
Eucgr.A00076 Eucalyptus grandis HOM05D005795 ORTHO05D007200 1.3e-60 237.7 209 55.5
SMO137G0277 Selaginella moellendorffii HOM05D005795 ORTHO05D007200 1.9e-59 233.8 327 49.5
Mapoly0093s0047 Marchantia polymorpha HOM05D005795 ORTHO05D007200 3.3e-59 233.0 322 51.6
SHI30236 Sapria himalayana HOM05D005795 ORTHO05D007200 7.3e-59 231.9 256 44.9
BcaC06g33415 Brassica carinata HOM05D005795 ORTHO05D007200 1.5e-56 224.2 325 44.6
Cc05_g03950 Coffea canephora HOM05D005795 ORTHO05D007200 2.0e-56 223.8 170 61.2
Nitab4.5_0005570g0030 Nicotiana tabacum HOM05D005795 ORTHO05D007200 2.3e-52 210.3 167 57.5
Sc03g0006720 Simmondsia chinensis HOM05D005795 ORTHO05D007200 1.4e-49 201.1 167 55.7
Oeu035829.1 Olea europaea HOM05D005795 ORTHO05D007200 4.0e-49 199.5 231 44.2
BolC1t02678H Brassica oleracea HOM05D005795 ORTHO05D000108 1.4e-46 191.0 170 55.3
BcaC06g32941 Brassica carinata HOM05D005795 ORTHO05D007200 3.6e-42 176.4 172 51.7
FAN17G0508 Fragaria x ananassa HOM05D005795 ORTHO05D007200 1.4e-38 164.5 189 48.1
AagrBONN_evm.TU.Sc2ySwM_228.2319 Anthoceros agrestis HOM05D005795 ORTHO05D007200 4.5e-32 142.9 210 55.7
MCO13G170 Micromonas commoda HOM05D005795 ORTHO05D007200 1.1e-30 138.3 253 32.8
CBR_g21757 Chara braunii HOM05D005795 ORTHO05D007200 3.5e-29 133.3 353 38.0
Eucgr.L02278 Eucalyptus grandis HOM05D005795 ORTHO05D007200 2.0e-24 117.5 111 54.1
Haze_01530 Corylus avellana HOM05D005795 ORTHO05D007200 4.9e-23 112.8 79 70.9
Duzib151G0649 Durio zibethinus HOM05D005795 ORTHO05D007200 8.4e-23 112.1 106 51.9
AagrBONN_evm.TU.Sc2ySwM_117.2773 Anthoceros agrestis HOM05D005795 ORTHO05D007200 1.9e-22 110.9 169 35.5
TAR633G0840 Trochodendron aralioides HOM05D005795 ORTHO05D007200 3.0e-20 103.6 132 43.2
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 5.1e-20 102.8 347 29.1
Cre01.g016950 Chlamydomonas reinhardtii HOM05D005795 ORTHO05D007200 8.7e-20 102.1 233 47.2
SHI30240 Sapria himalayana HOM05D005795 ORTHO05D007200 6.3e-18 95.9 70 67.1
Cpa.g.sc41.23 Carica papaya HOM05D005795 ORTHO05D007200 7.6e-16 89.0 89 50.6
A05p02150 Brassica napus HOM05D005795 ORTHO05D007200 2.3e-12 77.4 60 60.0
Cpa.g.sc41.24 Carica papaya HOM05D005795 ORTHO05D007200 3.9e-12 76.6 128 35.9
SGA_v2.0_scaffold28G11802 Striga asiatica HOM05D005795 ORTHO05D007200 4.3e-11 73.2 184 28.3
PSO648G0124 Papaver somniferum HOM05D005795 ORTHO05D007200 1.6e-10 71.2 48 64.6
Gohir.A10G135766 Gossypium hirsutum HOM05D005795 ORTHO05D007200 4.5e-08 63.2 58 55.2
Rhsim12G0155600 Rhododendron simsii HOM05D005795 ORTHO05D007200 2.5e-06 57.4 44 63.6
Rhsim05G0171500 Rhododendron simsii HOM05D005795 ORTHO05D007200 9.4e-06 55.5 45 57.8


User provided reference genes

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