Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g097890 Medicago truncatula HOM05D005372 ORTHO05D006593 3.7e-74 281.6 155 100.0
Psat5g285800 Pisum sativum HOM05D005372 ORTHO05D006593 5.1e-63 244.6 156 84.6
TPR.G6862 Trifolium pratense HOM05D005372 ORTHO05D006593 7.3e-62 240.7 155 88.4
Lalb_Chr14g0372091 Lupinus albus HOM05D005372 ORTHO05D006593 6.2e-53 211.1 155 75.5
Lj3g0018318 Lotus japonicus HOM05D005372 ORTHO05D006593 5.2e-52 208.0 155 75.5
Phvul.011G039001 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 5.2e-52 208.0 155 67.1
Lj6g0015977 Lotus japonicus HOM05D005372 ORTHO05D006593 2.0e-51 206.1 157 75.8
Glyma.15G033200 Glycine max HOM05D005372 ORTHO05D006593 1.7e-50 203.0 155 72.3
Phvul.011G206600 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 6.4e-50 201.1 155 71.6
VMungo1127G1276 Vigna mungo HOM05D005372 ORTHO05D006593 4.6e-48 194.9 156 70.5
arahy.Tifrunner.gnm1.ann1.IGF4QT Arachis hypogaea HOM05D005372 ORTHO05D006593 2.5e-46 189.1 158 70.9
arahy.Tifrunner.gnm1.ann1.UR5XNC Arachis hypogaea HOM05D005372 ORTHO05D006593 7.3e-46 187.6 156 70.5
Lalb_Chr24g0397111 Lupinus albus HOM05D005372 ORTHO05D006593 1.3e-45 186.8 145 73.8
VMungo1127G1643 Vigna mungo HOM05D005372 ORTHO05D006593 1.6e-45 186.4 158 66.5
Glyma.13G341200 Glycine max HOM05D005372 ORTHO05D006593 9.0e-44 180.6 157 66.9
Gohir.D07G106400 Gossypium hirsutum HOM05D005372 ORTHO05D006593 1.3e-42 176.8 155 54.2
Duzib168G1893 Durio zibethinus HOM05D005372 ORTHO05D006593 1.7e-42 176.4 155 60.0
Cpa.g.sc112.93 Carica papaya HOM05D005372 ORTHO05D006593 2.9e-42 175.6 158 60.8
Gorai.001G114500 Gossypium raimondii HOM05D005372 ORTHO05D006593 1.1e-41 173.7 155 53.5
Glyma.11G111000 Glycine max HOM05D005372 ORTHO05D006593 1.4e-41 173.3 146 67.1
FvH4_3g37450 Fragaria vesca HOM05D005372 ORTHO05D006593 4.2e-41 171.8 137 56.2
Nitab4.5_0000744g0090 Nicotiana tabacum HOM05D005372 ORTHO05D006593 5.4e-41 171.4 158 55.7
Gohir.A07G102200 Gossypium hirsutum HOM05D005372 ORTHO05D006593 7.1e-41 171.0 155 58.1
PGSC0003DMG400030429 Solanum tuberosum HOM05D005372 ORTHO05D006593 9.3e-41 170.6 158 51.3
FAN11G0559 Fragaria x ananassa HOM05D005372 ORTHO05D006593 1.6e-40 169.9 137 64.2
Peaxi162Scf01058g00152 Petunia axillaris HOM05D005372 ORTHO05D006593 2.1e-40 169.5 143 66.4
Sopen06g033010 Solanum pennellii HOM05D005372 ORTHO05D006593 2.1e-40 169.5 158 51.9
Sabra09G0028200 Salix brachista HOM05D005372 ORTHO05D006593 3.5e-40 168.7 148 59.5
Solyc06g076620.3 Solanum lycopersicum HOM05D005372 ORTHO05D006593 3.5e-40 168.7 158 51.9
CiPaw.14G062800 Carya illinoinensis HOM05D005372 ORTHO05D006593 7.8e-40 167.5 158 52.5
CANSAT54G2064 Cannabis sativa HOM05D005372 ORTHO05D006593 1.7e-39 166.4 156 60.9
Potri.009G040100 Populus trichocarpa HOM05D005372 ORTHO05D006593 1.7e-39 166.4 102 71.6
SalBow4G1938 Salvia bowleyana HOM05D005372 ORTHO05D006593 1.7e-39 166.4 140 58.6
TWI75G1302 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 2.3e-39 166.0 153 52.9
Manes.02G123700 Manihot esculenta HOM05D005372 ORTHO05D006593 5.1e-39 164.9 156 60.3
Nitab4.5_0002718g0040 Nicotiana tabacum HOM05D005372 ORTHO05D006593 6.6e-39 164.5 158 51.9
TWI79G0177 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 6.6e-39 164.5 144 54.9
Ciclev10029469m.g Citrus clementina HOM05D005372 ORTHO05D006593 8.7e-39 164.1 102 70.6
Thecc.09G309200 Theobroma cacao HOM05D005372 ORTHO05D006593 8.7e-39 164.1 156 58.3
Atru.chr3.4040 Acer truncatum HOM05D005372 ORTHO05D006593 1.1e-38 163.7 102 71.6
FAN25G0461 Fragaria x ananassa HOM05D005372 ORTHO05D006593 1.1e-38 163.7 127 58.3
Nn3g19715 Nelumbo nucifera HOM05D005372 ORTHO05D006593 1.1e-38 163.7 121 63.6
RcHm_v2.0_Chr5g0067341 Rosa chinensis HOM05D005372 ORTHO05D006593 1.1e-38 163.7 139 59.7
Potri.001G246800 Populus trichocarpa HOM05D005372 ORTHO05D006593 1.5e-38 163.3 103 71.8
CAN.G394.95 Capsicum annuum HOM05D005372 ORTHO05D006593 4.3e-38 161.8 160 58.1
MD03G1080100 Malus domestica HOM05D005372 ORTHO05D006593 1.3e-37 160.2 156 56.4
FAN21G1258 Fragaria x ananassa HOM05D005372 ORTHO05D006593 1.6e-37 159.8 128 65.6
MSTRG.14035 Avicennia marina HOM05D005372 ORTHO05D006593 2.1e-37 159.5 150 54.7
Cc01_g13660 Coffea canephora HOM05D005372 ORTHO05D006593 2.1e-37 159.5 139 56.8
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 2.8e-37 159.1 158 58.9
PGR119G2477 Punica granatum HOM05D005372 ORTHO05D006593 2.8e-37 159.1 141 66.7
Prupe.6G065000 Prunus persica HOM05D005372 ORTHO05D006593 3.6e-37 158.7 158 60.8
TAR633G2482 Trochodendron aralioides HOM05D005372 ORTHO05D006593 4.8e-37 158.3 121 71.1
THA.LOC104810736 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 1.4e-36 156.8 155 50.3
Eucgr.J01954 Eucalyptus grandis HOM05D005372 ORTHO05D006593 1.8e-36 156.4 160 58.8
THA.LOC104799412 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 2.4e-36 156.0 125 58.4
Dinv17075 Davidia involucrata HOM05D005372 ORTHO05D006593 3.1e-36 155.6 133 63.9
Dinv43019 Davidia involucrata HOM05D005372 ORTHO05D006593 3.1e-36 155.6 133 63.9
Dinv43078 Davidia involucrata HOM05D005372 ORTHO05D006593 3.1e-36 155.6 133 63.9
MD11G1084700 Malus domestica HOM05D005372 ORTHO05D006593 3.1e-36 155.6 157 55.4
Thhalv10014944m.g Eutrema salsugineum HOM05D005372 ORTHO05D006593 5.3e-36 154.8 138 55.1
unitig_26.g9774 Utricularia gibba HOM05D005372 ORTHO05D006593 5.3e-36 154.8 115 60.9
Migut.K01340 Erythranthe guttata HOM05D005372 ORTHO05D006593 6.9e-36 154.5 130 56.2
BcaB08g36298 Brassica carinata HOM05D005372 ORTHO05D006593 2.6e-35 152.5 128 58.6
Sed0010324 Sechium edule HOM05D005372 ORTHO05D006593 4.5e-35 151.8 122 66.4
SGA_v2.0_scaffold35G14025 Striga asiatica HOM05D005372 ORTHO05D006593 4.5e-35 151.8 130 63.8
TAR636G0867 Trochodendron aralioides HOM05D005372 ORTHO05D006593 5.8e-35 151.4 122 62.3
ClCG02G019810 Citrullus lanatus HOM05D005372 ORTHO05D006593 7.6e-35 151.0 115 64.3
Hma1.2p1_0543F.1_g175310 Hydrangea macrophylla HOM05D005372 ORTHO05D006593 1.3e-34 150.2 141 61.0
Actinidia08556 Actinidia chinensis HOM05D005372 ORTHO05D006593 3.8e-34 148.7 131 65.6
BcaB05g22467 Brassica carinata HOM05D005372 ORTHO05D006593 3.8e-34 148.7 148 48.6
CDE07G0920 Ceratophyllum demersum HOM05D005372 ORTHO05D006593 3.8e-34 148.7 116 60.3
Actinidia25121 Actinidia chinensis HOM05D005372 ORTHO05D006593 4.9e-34 148.3 84 75.0
HanXRQChr04g0109301 Helianthus annuus HOM05D005372 ORTHO05D006593 4.9e-34 148.3 111 61.3
Oeu017419.1 Olea europaea HOM05D005372 ORTHO05D006593 4.9e-34 148.3 79 75.9
MELO3C025881.2 Cucumis melo HOM05D005372 ORTHO05D006593 6.4e-34 147.9 146 60.3
Lsat_1_v5_gn_9_25321 Lactuca sativa HOM05D005372 ORTHO05D006593 6.4e-34 147.9 102 62.7
SGA_v2.0_scaffold8G04342 Striga asiatica HOM05D005372 ORTHO05D006593 6.4e-34 147.9 141 57.4
Aa31LG1G11690 Aethionema arabicum HOM05D005372 ORTHO05D006593 8.4e-34 147.5 154 48.1
CsaV3_6G016530 Cucumis sativus L. HOM05D005372 ORTHO05D006593 8.4e-34 147.5 146 58.9
ECA247G0538 Erigeron canadensis HOM05D005372 ORTHO05D006593 8.4e-34 147.5 87 71.3
FAN16G3555 Fragaria x ananassa HOM05D005372 ORTHO05D006593 8.4e-34 147.5 153 50.3
AL8G35370 Arabidopsis lyrata HOM05D005372 ORTHO05D006593 1.1e-33 147.1 140 52.1
A03p11910 Brassica napus HOM05D005372 ORTHO05D006593 1.9e-33 146.4 85 71.8
BraA03t10503Z Brassica rapa HOM05D005372 ORTHO05D006593 1.9e-33 146.4 85 71.8
Carub.0008s1963 Capsella rubella HOM05D005372 ORTHO05D006593 1.9e-33 146.4 83 72.3
HanXRQChr03g0083951 Helianthus annuus HOM05D005372 ORTHO05D006593 1.9e-33 146.4 114 57.9
Sp6g20690 Schrenkiella parvula HOM05D005372 ORTHO05D006593 1.9e-33 146.4 126 55.6
Aqoxy1G00762 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 2.4e-33 146.0 135 58.5
BcaC03g14063 Brassica carinata HOM05D005372 ORTHO05D006593 2.4e-33 146.0 127 57.5
C02p12980 Brassica napus HOM05D005372 ORTHO05D006593 2.4e-33 146.0 127 57.5
BolC3t13848H Brassica oleracea HOM05D005372 ORTHO05D006593 3.2e-33 145.6 140 48.6
CSS0039141 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 3.2e-33 145.6 132 62.1
CARHR285220 Cardamine hirsuta HOM05D005372 ORTHO05D006593 3.2e-33 145.6 95 66.3
AT5G58990 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 4.2e-33 145.2 138 48.6
CSS0037054 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 4.2e-33 145.2 132 61.4
BraA02t05820Z Brassica rapa HOM05D005372 ORTHO05D006593 5.4e-33 144.8 156 48.1
AT5G52370 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 7.1e-33 144.4 136 51.5
A02p07420 Brassica napus HOM05D005372 ORTHO05D006593 7.1e-33 144.4 156 48.1
Aqoxy4G02649 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 1.2e-32 143.7 75 78.7
C03p14010 Brassica napus HOM05D005372 ORTHO05D006593 1.6e-32 143.3 138 47.8
Rhsim13G0075100 Rhododendron simsii HOM05D005372 ORTHO05D006593 1.6e-32 143.3 149 51.0
AUR62001715 Chenopodium quinoa HOM05D005372 ORTHO05D006593 6.0e-32 141.4 84 72.6
MBI14_g28605_MAGBIO Magnolia biondii HOM05D005372 ORTHO05D006593 6.0e-32 141.4 74 79.7
SalBow6G3269 Salvia bowleyana HOM05D005372 ORTHO05D006593 6.0e-32 141.4 145 49.7
BcaB01g04621 Brassica carinata HOM05D005372 ORTHO05D006593 7.9e-32 141.0 121 55.4
PSO541G6474 Papaver somniferum HOM05D005372 ORTHO05D006593 1.0e-31 140.6 125 54.4
EL10Ac7g16097 Beta vulgaris HOM05D005372 ORTHO05D006593 3.9e-31 138.7 84 72.6
Ah.13g070300 Amaranthus hybridus HOM05D005372 ORTHO05D006593 8.7e-31 137.5 78 74.4
PSO675G4385 Papaver somniferum HOM05D005372 ORTHO05D006593 8.7e-31 137.5 124 53.2
Hund04902 Selenicereus undatus HOM05D005372 ORTHO05D006593 1.1e-30 137.1 105 61.0
Sabra16G0149900 Salix brachista HOM05D005372 ORTHO05D006593 8.1e-29 131.0 102 59.8
Dinv34320 Davidia involucrata HOM05D001226 ORTHO05D006593 2.6e-27 125.9 68 80.9
Os02g0481000 Oryza sativa ssp. japonica HOM05D005372 ORTHO05D006593 1.9e-25 119.8 84 58.3
Zm00001eb066290 Zea mays HOM05D005372 ORTHO05D006593 9.3e-25 117.5 84 57.1
QL01p028939 Quercus lobata HOM05D005372 ORTHO05D006593 1.0e-23 114.0 106 65.1
Nn1g02876 Nelumbo nucifera HOM05D005372 ORTHO05D006593 1.8e-23 113.2 91 60.4
Nitab4.5_0000933g0130 Nicotiana tabacum HOM05D005372 ORTHO05D006593 3.9e-23 112.1 163 39.9
Zm00001eb433670 Zea mays HOM05D005372 ORTHO05D006593 3.9e-23 112.1 113 45.1
Haze_24230 Corylus avellana HOM05D005372 ORTHO05D006593 5.1e-23 111.7 115 60.0
C09p51220 Brassica napus HOM05D005372 ORTHO05D006593 1.9e-22 109.8 135 42.2
Lj4P191T41 Lonicera japonica HOM05D005372 ORTHO05D006593 1.6e-21 106.7 52 84.6
DCAR_028257 Daucus carota HOM05D005372 ORTHO05D006593 2.1e-21 106.3 52 84.6
BolC2t07410H Brassica oleracea HOM05D005372 ORTHO05D006593 3.7e-21 105.5 143 42.7
Oeu002454.1 Olea europaea HOM05D005372 ORTHO05D006593 4.8e-21 105.1 85 56.5
COL.COLO4_19070 Corchorus olitorius HOM05D005372 ORTHO05D006593 8.4e-18 94.4 155 42.6
ATR0618G182 Amborella trichopoda HOM05D005372 ORTHO05D006593 1.1e-17 94.0 86 58.1
Mapoly0002s0283 Marchantia polymorpha HOM05D005372 ORTHO05D006593 1.1e-17 94.0 74 52.7
AagrBONN_evm.TU.Sc2ySwM_228.2511 Anthoceros agrestis HOM05D005372 ORTHO05D006593 1.2e-16 90.5 77 51.9
SHI05895 Sapria himalayana HOM05D005372 ORTHO05D006593 1.8e-15 86.7 134 40.3
Glyma.12G037300 Glycine max HOM05D005372 ORTHO05D006593 2.3e-15 86.3 95 57.9
Pp3c9_8860 Physcomitrium patens HOM05D005372 ORTHO05D006593 1.5e-14 83.6 76 52.6
BraA10t43707Z Brassica rapa HOM05D005372 ORTHO05D006593 2.5e-14 82.8 67 55.2
vmacro03009 Vaccinium macrocarpon HOM05D005372 ORTHO05D006593 3.7e-13 79.0 53 66.0
Sc06g0008390 Simmondsia chinensis HOM05D005372 ORTHO05D006593 4.5e-11 72.0 88 43.2
SMO111G0201 Selaginella moellendorffii HOM05D005372 ORTHO05D006593 6.5e-10 68.2 74 40.5
MD06G1146500 Malus domestica HOM05D005372 ORTHO05D006593 1.1e-09 67.4 69 69.6
CBR_g8222 Chara braunii HOM05D005372 ORTHO05D006593 4.2e-09 65.5 75 41.3
Dinv20930 Davidia involucrata HOM05D005372 ORTHO05D006593 3.6e-08 62.4 46 54.3
Dinv21014 Davidia involucrata HOM05D005372 ORTHO05D006593 7.9e-08 61.2 45 55.6
Zm00001eb217580 Zea mays HOM05D000360 ORTHO05D000234 6.7e-07 58.2 38 63.2
Zm00001eb023370 Zea mays HOM05D000798 ORTHO05D000659 2.5e-06 56.2 46 54.3


User provided reference genes

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