Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g097730 Medicago truncatula HOM05D008943 ORTHO05D010477 9.5e-65 250.0 122 100.0
TPR.G6894 Trifolium pratense HOM05D008943 ORTHO05D010477 1.5e-41 172.9 123 70.7
Glyma.15G035400 Glycine max HOM05D008943 ORTHO05D010477 1.5e-33 146.4 127 60.6
Lj3g0000367 Lotus japonicus HOM05D008943 ORTHO05D010477 5.2e-31 137.9 125 60.0
Glyma.13G338900 Glycine max HOM05D008943 ORTHO05D010477 9.9e-30 133.7 126 59.5
Lj3g0017475 Lotus japonicus HOM05D008943 ORTHO05D010477 9.3e-28 127.1 124 53.2
VMungo1080G1120 Vigna mungo HOM05D008943 ORTHO05D010477 6.0e-27 124.4 129 56.6
Lalb_Chr14g0372021 Lupinus albus HOM05D008943 ORTHO05D010477 3.3e-25 118.6 124 51.6
Phvul.L008143 Phaseolus vulgaris HOM05D008943 ORTHO05D010477 3.3e-25 118.6 126 54.0
QL01p029253 Quercus lobata HOM05D008943 ORTHO05D010477 1.5e-17 93.2 120 39.2
FvH4_3g36931 Fragaria vesca HOM05D008943 ORTHO05D010477 9.6e-17 90.5 113 41.6
RcHm_v2.0_Chr5g0066341 Rosa chinensis HOM05D008943 ORTHO05D010477 1.3e-16 90.1 121 38.0
CiPaw.13G089400 Carya illinoinensis HOM05D008943 ORTHO05D010477 4.8e-16 88.2 112 43.8
CiPaw.14G065200 Carya illinoinensis HOM05D008943 ORTHO05D010477 1.4e-15 86.7 113 41.6
Haze_24168 Corylus avellana HOM05D008943 ORTHO05D010477 6.9e-15 84.3 112 42.9
Haze_24173 Corylus avellana HOM05D008943 ORTHO05D010477 6.9e-15 84.3 112 42.9
Prupe.6G070600 Prunus persica HOM05D008943 ORTHO05D010477 3.4e-14 82.0 113 42.5
Cfa011556 Carpinus fangiana HOM05D008943 ORTHO05D010477 2.2e-13 79.3 113 40.7
TWI31G0177 Tripterygium wilfordii HOM05D008943 ORTHO05D010477 4.9e-13 78.2 109 43.1
TWI79G1516 Tripterygium wilfordii HOM05D008943 ORTHO05D010477 1.1e-12 77.0 111 39.6
MELO3C025891.2 Cucumis melo HOM05D008943 ORTHO05D010477 1.9e-12 76.3 128 40.6
TPR.G23615 Trifolium pratense HOM05D029454 ORTHO05D010477 2.4e-12 75.9 130 40.8
CsaV3_7G010000 Cucumis sativus L. HOM05D008943 ORTHO05D010477 5.4e-12 74.7 116 43.1
Nn2g11207 Nelumbo nucifera HOM05D008943 ORTHO05D010477 7.1e-12 74.3 121 37.2
ClCG02G019900 Citrullus lanatus HOM05D008943 ORTHO05D010477 9.3e-12 73.9 116 42.2
CANSAT54G0610 Cannabis sativa HOM05D008943 ORTHO05D010477 1.2e-11 73.6 144 34.7
TPR.G238 Trifolium pratense HOM05D029454 ORTHO05D010477 1.6e-11 73.2 129 38.0
Sabra09G0025900 Salix brachista HOM05D008943 ORTHO05D010477 2.7e-11 72.4 114 38.6
Potri.009G036600 Populus trichocarpa HOM05D008943 ORTHO05D010477 8.7e-10 67.4 116 36.2
Medtr4g064870 Medicago truncatula HOM05D029454 ORTHO05D010477 1.1e-09 67.0 87 49.4
Potri.001G244200 Populus trichocarpa HOM05D008943 ORTHO05D010477 1.9e-09 66.2 122 36.1
A10p06000 Brassica napus HOM05D010249 ORTHO05D012412 3.3e-09 65.5 114 36.0
Ciclev10030147m.g Citrus clementina HOM05D008943 ORTHO05D010477 7.4e-09 64.3 114 40.4
Manes.01G169500 Manihot esculenta HOM05D008943 ORTHO05D010477 9.6e-09 63.9 119 38.7
PGSC0003DMG400030330 Solanum tuberosum HOM05D018880 ORTHO05D010477 9.6e-09 63.9 110 37.3
BraA10t42862Z Brassica rapa HOM05D010249 ORTHO05D012412 1.6e-08 63.2 114 35.1
BcaC05g24698 Brassica carinata HOM05D010249 ORTHO05D012412 2.1e-08 62.8 114 33.3
BolC5t29320H Brassica oleracea HOM05D010249 ORTHO05D012412 2.1e-08 62.8 114 33.3
Lsat_1_v5_gn_9_24780 Lactuca sativa HOM05D008943 ORTHO05D010477 2.8e-08 62.4 124 38.7
C05p05480 Brassica napus HOM05D010249 ORTHO05D012412 3.7e-08 62.0 114 33.3
Duzib168G0546 Durio zibethinus HOM05D014101 ORTHO05D010477 3.7e-08 62.0 119 33.6
Os03g0270800 Oryza sativa ssp. japonica HOM05D008943 ORTHO05D010477 3.7e-08 62.0 143 31.5
Sopen06g032790 Solanum pennellii HOM05D018880 ORTHO05D010477 1.1e-07 60.5 110 36.4
Peaxi162Scf00481g00035 Petunia axillaris HOM05D018880 ORTHO05D010477 1.4e-07 60.1 118 36.4
Sp1g06210 Schrenkiella parvula HOM05D010249 ORTHO05D012412 1.4e-07 60.1 128 34.4
Zm00001eb012120 Zea mays HOM05D008943 ORTHO05D010477 1.4e-07 60.1 137 33.6
Sed0015087 Sechium edule HOM05D008943 ORTHO05D010477 1.8e-07 59.7 123 35.8
CARHR007230 Cardamine hirsuta HOM05D010249 ORTHO05D012412 3.1e-07 58.9 135 32.6
Carub.0001s0678 Capsella rubella HOM05D010249 ORTHO05D012412 4.0e-07 58.5 120 33.3
Carub.0001s0679 Capsella rubella HOM05D010249 ORTHO05D012412 4.0e-07 58.5 148 33.8
AL1G17640 Arabidopsis lyrata HOM05D010249 ORTHO05D012412 6.9e-07 57.8 134 33.6
Nitab4.5_0006916g0040 Nicotiana tabacum HOM05D018880 ORTHO05D010477 6.9e-07 57.8 117 36.8
Nitab4.5_0000463g0120 Nicotiana tabacum HOM05D018880 ORTHO05D010477 9.0e-07 57.4 111 36.9
AL1G17630 Arabidopsis lyrata HOM05D010249 ORTHO05D012412 1.2e-06 57.0 135 34.1
BcaB02g06739 Brassica carinata HOM05D010249 ORTHO05D012412 1.2e-06 57.0 122 36.9
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.6e-06 55.8 104 32.7
AT1G07473 Arabidopsis thaliana HOM05D010249 ORTHO05D012412 3.4e-06 55.5 135 32.6
Cc01_g13330 Coffea canephora HOM05D008943 ORTHO05D010477 7.6e-06 54.3 121 33.1
Oeu054839.1 Olea europaea HOM05D008943 ORTHO05D010477 7.6e-06 54.3 111 36.9


User provided reference genes

Program Settings