Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g097480 Medicago truncatula HOM05D004998 ORTHO05D006104 4.6e-95 351.3 188 100.0
TPR.G5593 Trifolium pratense HOM05D004998 ORTHO05D006104 6.8e-70 267.7 189 79.9
Psat5g285160 Pisum sativum HOM05D004998 ORTHO05D006104 2.2e-68 262.7 185 78.4
Glyma.15G036800 Glycine max HOM05D004998 ORTHO05D006104 4.4e-61 238.4 189 69.8
Glyma.13G337700 Glycine max HOM05D004998 ORTHO05D006104 5.7e-61 238.0 188 70.2
Lj3g0014072 Lotus japonicus HOM05D004998 ORTHO05D006104 7.5e-61 237.7 190 70.5
VMungo1080G1028 Vigna mungo HOM05D004998 ORTHO05D006104 1.2e-58 230.3 190 69.5
Lalb_Chr03g0026531 Lupinus albus HOM05D004998 ORTHO05D006104 7.8e-58 227.6 185 69.2
Phvul.L006843 Phaseolus vulgaris HOM05D004998 ORTHO05D006104 1.3e-57 226.9 190 66.3
arahy.Tifrunner.gnm1.ann1.AD2TJP Arachis hypogaea HOM05D004998 ORTHO05D006104 1.4e-51 206.8 190 64.2
arahy.Tifrunner.gnm1.ann1.JSTV8M Arachis hypogaea HOM05D004998 ORTHO05D006104 2.4e-51 206.1 190 64.2
Cfa011521 Carpinus fangiana HOM05D004998 ORTHO05D006104 1.6e-42 176.8 188 58.0
FvH4_3g36750 Fragaria vesca HOM05D004998 ORTHO05D006104 7.8e-42 174.5 189 57.1
CiPaw.14G067400 Carya illinoinensis HOM05D004998 ORTHO05D006104 3.0e-41 172.6 182 58.2
FAN11G2014 Fragaria x ananassa HOM05D004998 ORTHO05D006104 3.9e-41 172.2 189 57.7
RcHm_v2.0_Chr5g0065711 Rosa chinensis HOM05D004998 ORTHO05D006104 5.0e-41 171.8 182 57.1
GSVIVG01024930001 Vitis vinifera HOM05D004998 ORTHO05D006104 1.1e-40 170.6 188 55.9
ClCG02G020020 Citrullus lanatus HOM05D004998 ORTHO05D006104 7.3e-40 167.9 183 55.7
Ciclev10029345m.g Citrus clementina HOM05D004998 ORTHO05D006104 7.3e-40 167.9 180 57.2
Hma1.2p1_0615F.1_g189810 Hydrangea macrophylla HOM05D004998 ORTHO05D006104 9.5e-40 167.5 188 55.3
Atru.chr3.3979 Acer truncatum HOM05D004998 ORTHO05D006104 1.2e-39 167.2 180 56.7
Potri.009G033400 Populus trichocarpa HOM05D004998 ORTHO05D006104 2.8e-39 166.0 183 58.5
Dinv17028 Davidia involucrata HOM05D004998 ORTHO05D006104 4.7e-39 165.2 180 56.1
Dinv42976 Davidia involucrata HOM05D004998 ORTHO05D006104 4.7e-39 165.2 180 56.1
Dinv43123 Davidia involucrata HOM05D004998 ORTHO05D006104 4.7e-39 165.2 180 56.1
PGR102G0830 Punica granatum HOM05D004998 ORTHO05D006104 1.1e-38 164.1 189 56.6
FAN21G1380 Fragaria x ananassa HOM05D004998 ORTHO05D006104 3.1e-38 162.5 194 55.2
CANSAT54G1321 Cannabis sativa HOM05D004998 ORTHO05D006104 5.2e-38 161.8 181 53.0
Prupe.6G073200 Prunus persica HOM05D004998 ORTHO05D006104 1.5e-37 160.2 188 53.7
TWI79G0863 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 2.0e-37 159.8 188 51.6
CsaV3_6G016720 Cucumis sativus L. HOM05D004998 ORTHO05D006104 2.6e-37 159.5 182 54.9
CSS0033668 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 4.4e-37 158.7 189 55.6
Lj1A149T62 Lonicera japonica HOM05D004998 ORTHO05D006104 7.5e-37 157.9 188 53.2
MELO3C025903.2 Cucumis melo HOM05D004998 ORTHO05D006104 9.9e-37 157.5 182 52.7
FAN16G3214 Fragaria x ananassa HOM05D004998 ORTHO05D006104 9.9e-37 157.5 207 52.7
Nn2g11147 Nelumbo nucifera HOM05D004998 ORTHO05D006104 4.9e-36 155.2 190 51.6
MD03G1088800 Malus domestica HOM05D004998 ORTHO05D006104 6.4e-36 154.8 188 52.1
MD11G1097800 Malus domestica HOM05D004998 ORTHO05D006104 1.1e-35 154.1 188 51.6
QL01p031100 Quercus lobata HOM05D004998 ORTHO05D006104 1.9e-35 153.3 185 55.7
Eucgr.B02327 Eucalyptus grandis HOM05D004998 ORTHO05D006104 2.4e-35 152.9 189 51.3
TWI75G0636 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 3.2e-35 152.5 189 53.4
vmacro03047 Vaccinium macrocarpon HOM05D004998 ORTHO05D006104 7.1e-35 151.4 187 51.9
Sabra09G0023800 Salix brachista HOM05D004998 ORTHO05D006104 9.2e-35 151.0 180 56.1
CSS0032367 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 1.2e-34 150.6 180 54.4
CiPaw.13G091800 Carya illinoinensis HOM05D004998 ORTHO05D006104 2.1e-34 149.8 179 54.7
TAR633G0520 Trochodendron aralioides HOM05D004998 ORTHO05D006104 4.6e-34 148.7 188 51.6
Actinidia23927 Actinidia chinensis HOM05D004998 ORTHO05D006104 1.0e-33 147.5 180 52.2
TAR636G1117 Trochodendron aralioides HOM05D004998 ORTHO05D006104 3.9e-33 145.6 185 53.0
Rhsim13G0078800 Rhododendron simsii HOM05D004998 ORTHO05D006104 5.1e-33 145.2 187 51.3
Thecc.09G318900 Theobroma cacao HOM05D004998 ORTHO05D006104 6.6e-33 144.8 180 51.7
Actinidia34418 Actinidia chinensis HOM05D004998 ORTHO05D006104 8.6e-33 144.4 180 52.8
Duzib150G0269 Durio zibethinus HOM05D004998 ORTHO05D006104 1.5e-32 143.7 180 55.0
Duzib168G2185 Durio zibethinus HOM05D004998 ORTHO05D006104 1.5e-32 143.7 180 52.8
COL.COLO4_18543 Corchorus olitorius HOM05D004998 ORTHO05D006104 5.6e-32 141.7 180 52.2
THA.LOC104810769 Tarenaya hassleriana HOM05D004998 ORTHO05D006104 5.6e-32 141.7 182 52.7
MBI14_g12121_MAGBIO Magnolia biondii HOM05D004998 ORTHO05D006104 1.2e-31 140.6 182 51.1
DCAR_005961 Daucus carota HOM05D004998 ORTHO05D006104 6.2e-31 138.3 182 52.2
Gohir.A05G094300 Gossypium hirsutum HOM05D004998 ORTHO05D006104 6.2e-31 138.3 180 51.7
Manes.01G171600 Manihot esculenta HOM05D004998 ORTHO05D006104 8.1e-31 137.9 185 50.3
Nn2g13381 Nelumbo nucifera HOM05D004998 ORTHO05D006104 1.1e-30 137.5 188 50.5
Lalb_Chr01g0003571 Lupinus albus HOM05D004998 ORTHO05D006104 2.4e-30 136.3 133 60.9
Cc01_g13080 Coffea canephora HOM05D004998 ORTHO05D006104 6.8e-30 134.8 186 46.2
Migut.D02075 Erythranthe guttata HOM05D004998 ORTHO05D006104 4.9e-28 128.6 180 47.2
HanXRQChr07g0197281 Helianthus annuus HOM05D004998 ORTHO05D006104 4.9e-28 128.6 188 52.1
Aqoxy1G00915 Aquilegia oxysepala HOM05D004998 ORTHO05D006104 8.4e-28 127.9 192 49.5
AUR62009547 Chenopodium quinoa HOM05D004998 ORTHO05D006104 1.1e-27 127.5 179 48.0
ECA247G2861 Erigeron canadensis HOM05D004998 ORTHO05D006104 1.4e-27 127.1 192 49.0
HanXRQChr12g0374241 Helianthus annuus HOM05D004998 ORTHO05D006104 1.4e-27 127.1 188 50.5
SGA_v2.0_scaffold41G15739 Striga asiatica HOM05D004998 ORTHO05D006104 3.2e-27 125.9 182 50.0
AL8G35930 Arabidopsis lyrata HOM05D004998 ORTHO05D006104 4.1e-27 125.6 181 49.2
AUR62001761 Chenopodium quinoa HOM05D004998 ORTHO05D006104 7.1e-27 124.8 180 48.3
C03p13690 Brassica napus HOM05D004998 ORTHO05D006104 2.7e-26 122.9 189 43.9
EL10Ac7g16043 Beta vulgaris HOM05D004998 ORTHO05D006104 6.0e-26 121.7 179 46.4
Lsat_1_v5_gn_9_23841 Lactuca sativa HOM05D004998 ORTHO05D006104 7.8e-26 121.3 187 47.6
Gohir.D05G094800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 2.3e-25 119.8 180 47.8
SalBow3G1756 Salvia bowleyana HOM05D004998 ORTHO05D006104 2.3e-25 119.8 180 47.2
Carub.0008s2013 Capsella rubella HOM05D004998 ORTHO05D006104 3.0e-25 119.4 181 47.5
Hund18896 Selenicereus undatus HOM05D004998 ORTHO05D006104 3.9e-25 119.0 179 45.8
Sed0008555 Sechium edule HOM05D004998 ORTHO05D006104 5.1e-25 118.6 182 47.8
Haze_24126 Corylus avellana HOM05D004998 ORTHO05D006104 6.6e-25 118.2 103 67.0
Ah.08g219770 Amaranthus hybridus HOM05D004998 ORTHO05D006104 8.6e-25 117.9 186 45.2
MSTRG.18567 Avicennia marina HOM05D004998 ORTHO05D006104 1.1e-24 117.5 180 48.3
CARHR285830 Cardamine hirsuta HOM05D004998 ORTHO05D006104 1.1e-24 117.5 181 47.0
Peaxi162Scf00092g01117 Petunia axillaris HOM05D004998 ORTHO05D006104 1.5e-24 117.1 181 45.3
Sopen06g001560 Solanum pennellii HOM05D004998 ORTHO05D006104 2.5e-24 116.3 189 46.0
Solyc06g005600.3 Solanum lycopersicum HOM05D004998 ORTHO05D006104 4.3e-24 115.5 189 46.0
Sp6g21150 Schrenkiella parvula HOM05D004998 ORTHO05D006104 5.6e-24 115.2 181 44.2
Gorai.009G098000 Gossypium raimondii HOM05D004998 ORTHO05D006104 7.3e-24 114.8 180 48.3
AT5G59460 Arabidopsis thaliana HOM05D004998 ORTHO05D006104 9.6e-24 114.4 181 46.4
ATR0559G067 Amborella trichopoda HOM05D004998 ORTHO05D006104 4.7e-23 112.1 186 45.2
PGSC0003DMG400002149 Solanum tuberosum HOM05D004998 ORTHO05D006104 4.7e-23 112.1 190 45.3
Aa31LG4G15620 Aethionema arabicum HOM05D004998 ORTHO05D006104 6.2e-23 111.7 181 42.0
Thhalv10014846m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 1.4e-22 110.5 181 44.8
Nitab4.5_0000272g0050 Nicotiana tabacum HOM05D004998 ORTHO05D006104 1.4e-22 110.5 199 43.7
Thhalv10002686m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 3.1e-22 109.4 187 42.8
BcaB08g36256 Brassica carinata HOM05D004998 ORTHO05D006104 4.0e-22 109.0 182 42.3
Gohir.A03G043800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 1.5e-21 107.1 175 49.1
Peaxi162Scf00122g01415 Petunia axillaris HOM05D004998 ORTHO05D006104 1.5e-21 107.1 181 45.3
A02p07120 Brassica napus HOM05D004998 ORTHO05D006104 2.0e-21 106.7 169 46.2
BraA02t05793Z Brassica rapa HOM05D004998 ORTHO05D006104 2.0e-21 106.7 169 46.2
BcaC03g14012 Brassica carinata HOM05D004998 ORTHO05D006104 3.4e-21 105.9 169 46.2
C02p12480 Brassica napus HOM05D004998 ORTHO05D006104 3.4e-21 105.9 169 46.2
BolC2t07348H Brassica oleracea HOM05D004998 ORTHO05D006104 3.4e-21 105.9 169 46.2
Gohir.D03G123600 Gossypium hirsutum HOM05D004998 ORTHO05D006104 3.4e-21 105.9 176 50.0
Dinv06259 Davidia involucrata HOM05D004998 ORTHO05D006104 4.4e-21 105.5 103 59.2
CDE02G2808 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 1.7e-20 103.6 180 41.7
Oeu053883.1 Olea europaea HOM05D004998 ORTHO05D006104 2.2e-20 103.2 175 41.1
BcaB05g22508 Brassica carinata HOM05D004998 ORTHO05D006104 6.4e-20 101.7 168 43.5
A10p16680 Brassica napus HOM05D004998 ORTHO05D006104 8.4e-20 101.3 172 41.9
BraA10t43749Z Brassica rapa HOM05D004998 ORTHO05D006104 8.4e-20 101.3 172 41.9
Gorai.003G130300 Gossypium raimondii HOM05D004998 ORTHO05D006104 8.4e-20 101.3 176 48.9
HPP92_006623 Vanilla planifolia HOM05D004998 ORTHO05D006104 1.1e-19 100.9 219 37.0
Os01g0144600 Oryza sativa ssp. japonica HOM05D004998 ORTHO05D006104 5.4e-19 98.6 201 39.8
PSO339G2709 Papaver somniferum HOM05D004998 ORTHO05D006104 2.1e-18 96.7 193 42.5
CDE08G1537 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 1.7e-17 93.6 146 44.5
FvH4_3g41460 Fragaria vesca HOM05D004998 ORTHO05D006104 1.7e-17 93.6 177 41.8
FAN11G1834 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.7e-17 93.6 177 41.8
Cpa.g.sc81.121 Carica papaya HOM05D004998 ORTHO05D006104 3.9e-17 92.4 76 63.2
Zm00001eb124480 Zea mays HOM05D004998 ORTHO05D006104 3.9e-17 92.4 82 56.1
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 1.9e-16 90.1 170 44.1
BolC3t13819H Brassica oleracea HOM05D004998 ORTHO05D006104 1.9e-16 90.1 155 44.5
C09p51870 Brassica napus HOM05D004998 ORTHO05D006104 3.3e-16 89.4 153 41.2
Nitab4.5_0006945g0010 Nicotiana tabacum HOM05D004998 ORTHO05D006104 3.6e-15 85.9 109 51.4
arahy.Tifrunner.gnm1.ann1.MN3VL9 Arachis hypogaea HOM05D004998 ORTHO05D006104 2.4e-14 83.2 94 53.2
FAN21G1361 Fragaria x ananassa HOM05D004998 ORTHO05D006104 2.4e-14 83.2 177 39.0
Sc12g0001370 Simmondsia chinensis HOM05D004998 ORTHO05D006104 2.0e-13 80.1 136 41.9
BcaC04g19766 Brassica carinata HOM05D004998 ORTHO05D006104 2.6e-13 79.7 178 37.1
BolC9t58049H Brassica oleracea HOM05D004998 ORTHO05D006104 7.6e-13 78.2 137 40.9
BcaB08g36255 Brassica carinata HOM05D004998 ORTHO05D006104 1.7e-12 77.0 175 37.1
FAN25G2664 Fragaria x ananassa HOM05D004998 ORTHO05D006104 3.8e-12 75.9 177 37.3
SEGI_30466 Sequoiadendron giganteum HOM05D004998 ORTHO05D006104 2.4e-11 73.2 138 37.0
Nitab4.5_0007132g0030 Nicotiana tabacum HOM05D004998 ORTHO05D006104 2.7e-10 69.7 174 35.6
C03p13710 Brassica napus HOM05D004998 ORTHO05D006104 3.5e-10 69.3 142 38.7
Pp3c16_15780 Physcomitrium patens HOM05D004998 ORTHO05D006104 5.1e-09 65.5 139 37.4
Mapoly0094s0023 Marchantia polymorpha HOM05D004998 ORTHO05D006104 1.1e-08 64.3 80 50.0
Oeu002429.1 Olea europaea HOM05D004998 ORTHO05D006104 1.1e-08 64.3 59 59.3
Medtr4g064210 Medicago truncatula HOM05D004998 ORTHO05D006104 4.3e-08 62.4 56 55.4
BcaC01g06521 Brassica carinata HOM05D004998 ORTHO05D006104 1.3e-07 60.8 179 33.5
BcaB01g04577 Brassica carinata HOM05D004998 ORTHO05D006104 1.8e-06 57.0 151 38.4
arahy.Tifrunner.gnm1.ann1.JH7EIG Arachis hypogaea HOM05D000103 ORTHO05D000049 3.1e-06 56.2 53 54.7
FAN25G0408 Fragaria x ananassa HOM05D004998 ORTHO05D006104 5.3e-06 55.5 75 48.0


User provided reference genes

Program Settings