Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g095310 Medicago truncatula HOM05D007861 ORTHO05D007271 1.6e-52 209.1 105 100.0
TPR.G11489 Trifolium pratense HOM05D007861 ORTHO05D007271 1.4e-45 186.0 102 90.2
Glyma.13G323700 Glycine max HOM05D007861 ORTHO05D007271 8.8e-35 150.2 105 75.2
Glyma.12G177000 Glycine max HOM05D007861 ORTHO05D007271 1.1e-34 149.8 106 76.4
Phvul.005G132100 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 1.7e-33 146.0 104 75.0
Lalb_Chr24g0394821 Lupinus albus HOM05D007861 ORTHO05D007271 7.0e-32 140.6 103 70.9
Lj3g0021425 Lotus japonicus HOM05D007861 ORTHO05D007271 2.0e-31 139.0 105 69.5
Lalb_Chr14g0374511 Lupinus albus HOM05D007861 ORTHO05D007271 1.0e-30 136.7 103 68.0
arahy.Tifrunner.gnm1.ann1.ALS1H8 Arachis hypogaea HOM05D007861 ORTHO05D007271 7.2e-29 130.6 94 72.3
Glyma.12G079100 Glycine max HOM05D007861 ORTHO05D007271 2.2e-25 119.0 103 62.1
Glyma.11G195000 Glycine max HOM05D007861 ORTHO05D007271 2.8e-25 118.6 105 60.0
Lj3g0027314 Lotus japonicus HOM05D007861 ORTHO05D007271 6.3e-25 117.5 105 59.0
TPR.G6167 Trifolium pratense HOM05D007861 ORTHO05D007271 3.5e-23 111.7 114 56.1
Lalb_Chr01g0004491 Lupinus albus HOM05D007861 ORTHO05D007271 7.7e-23 110.5 105 57.1
VMungo1127G1395 Vigna mungo HOM05D007861 ORTHO05D007271 2.9e-22 108.6 104 55.8
Phvul.011G083700 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 8.5e-22 107.1 97 58.8
Lalb_Chr03g0027611 Lupinus albus HOM05D007861 ORTHO05D007271 4.7e-20 101.3 105 55.2
Medtr4g057830 Medicago truncatula HOM05D007861 ORTHO05D007271 7.5e-18 94.0 81 61.7
FAN16G3504 Fragaria x ananassa HOM05D007861 ORTHO05D007271 3.1e-16 88.6 109 53.2
Haze_23757 Corylus avellana HOM05D007861 ORTHO05D007271 1.2e-15 86.7 107 51.4
Cfa010349 Carpinus fangiana HOM05D007861 ORTHO05D007271 2.7e-15 85.5 83 59.0
FvH4_3g31180 Fragaria vesca HOM05D007861 ORTHO05D007271 2.7e-15 85.5 109 50.5
FAN11G3777 Fragaria x ananassa HOM05D007861 ORTHO05D007271 2.7e-15 85.5 109 50.5
FAN25G1997 Fragaria x ananassa HOM05D007861 ORTHO05D007271 2.7e-15 85.5 109 50.5
FAN21G2212 Fragaria x ananassa HOM05D007861 ORTHO05D007271 3.5e-15 85.1 109 51.4
Prupe.6G107700 Prunus persica HOM05D007861 ORTHO05D007271 4.5e-15 84.7 103 52.4
RcHm_v2.0_Chr5g0057831 Rosa chinensis HOM05D007861 ORTHO05D007271 7.7e-15 84.0 109 50.5
Manes.11G150200 Manihot esculenta HOM05D007861 ORTHO05D007271 3.8e-14 81.6 107 51.4
Potri.009G008300 Populus trichocarpa HOM05D007861 ORTHO05D007271 3.8e-14 81.6 100 51.0
CiPaw.13G118000 Carya illinoinensis HOM05D007861 ORTHO05D007271 8.5e-14 80.5 96 51.0
CiPaw.14G086500 Carya illinoinensis HOM05D007861 ORTHO05D007271 5.5e-13 77.8 96 45.8
CsaV3_6G014180 Cucumis sativus L. HOM05D007861 ORTHO05D007271 2.7e-12 75.5 100 45.0
Sed0017526 Sechium edule HOM05D007861 ORTHO05D007271 4.7e-12 74.7 91 48.4
MELO3C026916.2 Cucumis melo HOM05D007861 ORTHO05D007271 6.1e-12 74.3 101 44.6
ClCG02G021400 Citrullus lanatus HOM05D007861 ORTHO05D007271 1.4e-11 73.2 75 53.3
Sed0005749 Sechium edule HOM05D007861 ORTHO05D007271 5.2e-11 71.2 104 41.3
Potri.004G213900 Populus trichocarpa HOM05D007861 ORTHO05D007271 8.8e-11 70.5 93 50.5
Gohir.A05G106400 Gossypium hirsutum HOM05D007861 ORTHO05D007271 2.0e-10 69.3 100 43.0
Gohir.D05G106401 Gossypium hirsutum HOM05D007861 ORTHO05D007271 4.4e-10 68.2 101 42.6
Gorai.009G110500 Gossypium raimondii HOM05D007861 ORTHO05D007271 4.4e-10 68.2 101 42.6
Manes.04G015900 Manihot esculenta HOM05D007861 ORTHO05D007271 1.7e-09 66.2 87 52.9
Cpa.g.sc65.32 Carica papaya HOM05D007861 ORTHO05D007271 2.2e-09 65.9 101 46.5
TAR633G0087 Trochodendron aralioides HOM05D007861 ORTHO05D007271 2.2e-09 65.9 101 46.5
Atru.chr3.3557 Acer truncatum HOM05D007861 ORTHO05D007271 6.3e-09 64.3 103 41.7
Sabra09G0004800 Salix brachista HOM05D007861 ORTHO05D007271 6.3e-09 64.3 101 47.5
Thecc.09G347700 Theobroma cacao HOM05D007861 ORTHO05D007271 1.1e-08 63.5 102 42.2
Nn2g11569 Nelumbo nucifera HOM05D007861 ORTHO05D007271 1.4e-08 63.2 101 42.6
COL.COLO4_34705 Corchorus olitorius HOM05D007861 ORTHO05D007271 1.8e-08 62.8 102 43.1
Sabra04G0145100 Salix brachista HOM05D007861 ORTHO05D007271 1.8e-08 62.8 84 48.8
Nn2g13767 Nelumbo nucifera HOM05D007861 ORTHO05D007271 2.4e-08 62.4 108 40.7
Ciclev10029681m.g Citrus clementina HOM05D007861 ORTHO05D007271 3.1e-08 62.0 87 47.1
DCAR_018786 Daucus carota HOM05D007861 ORTHO05D007271 4.1e-08 61.6 83 42.2
Gorai.004G230800 Gossypium raimondii HOM05D007861 ORTHO05D007271 7.0e-08 60.8 107 39.3
BraA04t17695Z Brassica rapa HOM05D014739 ORTHO05D007271 9.2e-08 60.5 84 44.0
Gohir.D08G217100 Gossypium hirsutum HOM05D007861 ORTHO05D007271 9.2e-08 60.5 106 40.6
BcaB06g28183 Brassica carinata HOM05D014739 ORTHO05D007271 1.6e-07 59.7 84 44.0
MSTRG.21100 Avicennia marina HOM05D007861 ORTHO05D007271 2.0e-07 59.3 104 42.3
Migut.D02257 Erythranthe guttata HOM05D007861 ORTHO05D007271 2.0e-07 59.3 90 45.6
C04p57110 Brassica napus HOM05D014739 ORTHO05D007271 2.7e-07 58.9 84 44.0
BcaC02g08213 Brassica carinata HOM05D014739 ORTHO05D007271 3.5e-07 58.5 84 44.0
A04p21280 Brassica napus HOM05D014739 ORTHO05D007271 3.5e-07 58.5 84 44.0
BolC4t27246H Brassica oleracea HOM05D014739 ORTHO05D007271 3.5e-07 58.5 84 44.0
Hma1.2p1_0569F.1_g180260 Hydrangea macrophylla HOM05D007861 ORTHO05D007271 3.5e-07 58.5 70 50.0
Sp4g10850 Schrenkiella parvula HOM05D014739 ORTHO05D007271 3.5e-07 58.5 67 47.8
Gohir.A08G200000 Gossypium hirsutum HOM05D007861 ORTHO05D007271 1.3e-06 56.6 93 40.9
Hma1.2p1_0344F.1_g131140 Hydrangea macrophylla HOM05D007861 ORTHO05D007271 1.7e-06 56.2 64 50.0
Rhsim03G0116500 Rhododendron simsii HOM05D009695 ORTHO05D007271 1.7e-06 56.2 70 42.9
Carub.0004s0882 Capsella rubella HOM05D014739 ORTHO05D007271 2.3e-06 55.8 84 41.7
Migut.N02575 Erythranthe guttata HOM05D007861 ORTHO05D007271 2.3e-06 55.8 107 43.0
PGSC0003DMG400019683 Solanum tuberosum HOM05D007861 ORTHO05D007271 8.6e-06 53.9 46 52.2


User provided reference genes

Program Settings