Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g094980 Medicago truncatula HOM05D001944 ORTHO05D011318 9.4e-104 380.2 190 100.0
Medtr2g095030 Medicago truncatula HOM05D001944 ORTHO05D002405 1.6e-63 246.5 171 73.7
TPR.G11481 Trifolium pratense HOM05D001944 ORTHO05D002405 4.4e-61 238.4 176 69.3
Ca_01379_v3 Cicer arietinum L. HOM05D001944 ORTHO05D002405 3.8e-60 235.3 172 66.9
Ca_01395_v3 Cicer arietinum L. HOM05D001944 ORTHO05D002405 3.8e-60 235.3 172 66.9
Psat5g279720 Pisum sativum HOM05D001944 ORTHO05D002405 3.9e-57 225.3 172 67.4
Lj3g0013525 Lotus japonicus HOM05D001944 ORTHO05D002405 1.9e-56 223.0 173 65.9
Lalb_Chr24g0394751 Lupinus albus HOM05D001944 ORTHO05D002405 1.6e-50 203.4 171 60.2
Glyma.13G324500 Glycine max HOM05D001944 ORTHO05D002405 2.1e-50 203.0 175 61.1
Phvul.005G133500 Phaseolus vulgaris HOM05D001944 ORTHO05D002405 7.9e-50 201.1 172 58.7
Glyma.12G175400 Glycine max HOM05D001944 ORTHO05D002405 5.6e-48 194.9 173 60.1
Haze_23780 Corylus avellana HOM05D001944 ORTHO05D002405 3.5e-42 175.6 162 54.9
Cfa011296 Carpinus fangiana HOM05D001944 ORTHO05D002405 1.3e-41 173.7 179 50.8
Potri.013G006000 Populus trichocarpa HOM05D001944 ORTHO05D002405 1.3e-39 167.2 138 56.5
Glyma.11G196900 Glycine max HOM05D001944 ORTHO05D011318 4.8e-39 165.2 173 53.2
Glyma.12G077400 Glycine max HOM05D001944 ORTHO05D011318 3.1e-38 162.5 169 54.4
Gohir.A05G105000 Gossypium hirsutum HOM05D001944 ORTHO05D002405 2.0e-37 159.8 202 45.5
TPR.G6160 Trifolium pratense HOM05D001944 ORTHO05D011318 2.0e-37 159.8 171 51.5
Lj3g0022042 Lotus japonicus HOM05D001944 ORTHO05D011318 7.6e-37 157.9 167 52.1
Medtr4g058650 Medicago truncatula HOM05D001944 ORTHO05D011318 7.6e-37 157.9 172 52.3
FAN16G2569 Fragaria x ananassa HOM05D001944 ORTHO05D002405 1.0e-36 157.5 171 48.5
Gohir.D05G104800 Gossypium hirsutum HOM05D001944 ORTHO05D002405 1.0e-36 157.5 211 43.1
Gorai.009G108800 Gossypium raimondii HOM05D001944 ORTHO05D002405 1.3e-36 157.1 199 45.7
CiPaw.14G085200 Carya illinoinensis HOM05D001944 ORTHO05D002405 2.2e-36 156.4 136 55.9
Potri.005G010133 Populus trichocarpa HOM05D001944 ORTHO05D002405 2.2e-36 156.4 136 55.9
Prupe.6G104600 Prunus persica HOM05D001944 ORTHO05D002405 3.8e-36 155.6 133 54.1
FAN21G2742 Fragaria x ananassa HOM05D001944 ORTHO05D002405 4.9e-36 155.2 171 46.8
Duzib168G0647 Durio zibethinus HOM05D001944 ORTHO05D002405 6.5e-36 154.8 201 45.3
VMungo1080G1631 Vigna mungo HOM05D001944 ORTHO05D002405 8.4e-36 154.5 131 60.3
TAR636G3431 Trochodendron aralioides HOM05D001944 ORTHO05D002405 1.4e-35 153.7 142 52.8
FAN25G3826 Fragaria x ananassa HOM05D001944 ORTHO05D002405 3.2e-35 152.5 171 46.2
FvH4_3g31740 Fragaria vesca HOM05D001944 ORTHO05D002405 4.2e-35 152.1 171 45.6
FAN11G3960 Fragaria x ananassa HOM05D001944 ORTHO05D002405 4.2e-35 152.1 171 45.6
QL01p026770 Quercus lobata HOM05D001944 ORTHO05D002405 2.7e-34 149.4 171 45.6
Manes.03G122401 Manihot esculenta HOM05D001944 ORTHO05D002405 3.5e-34 149.1 154 48.7
TAR633G2605 Trochodendron aralioides HOM05D001944 ORTHO05D002405 3.5e-34 149.1 131 55.0
Potri.004G212700 Populus trichocarpa HOM05D001944 ORTHO05D002405 6.0e-34 148.3 138 51.4
Lalb_Chr19g0137131 Lupinus albus HOM05D001944 ORTHO05D011318 1.0e-33 147.5 165 49.7
RcHm_v2.0_Chr5g0058411 Rosa chinensis HOM05D001944 ORTHO05D002405 1.3e-33 147.1 172 47.7
Thecc.09G343900 Theobroma cacao HOM05D001944 ORTHO05D002405 1.8e-33 146.7 201 45.3
TWI31G0996 Tripterygium wilfordii HOM05D001944 ORTHO05D002405 3.9e-33 145.6 136 48.5
Lalb_Chr01g0004401 Lupinus albus HOM05D001944 ORTHO05D011318 5.1e-33 145.2 164 50.0
TAR369G0775 Trochodendron aralioides HOM05D001944 ORTHO05D002405 8.7e-33 144.4 131 51.9
Prupe.6G104700 Prunus persica HOM05D001944 ORTHO05D002405 1.1e-32 144.1 185 44.9
MD03G1121600 Malus domestica HOM05D001944 ORTHO05D002405 2.5e-32 142.9 135 51.1
TPR.G9836 Trifolium pratense HOM05D001944 ORTHO05D011318 2.5e-32 142.9 192 43.8
Psat7g192240 Pisum sativum HOM05D001944 ORTHO05D011318 5.7e-32 141.7 170 47.6
MD11G1139900 Malus domestica HOM05D001944 ORTHO05D002405 1.6e-31 140.2 135 50.4
Sabra05G0007500 Salix brachista HOM05D001944 ORTHO05D002405 2.1e-31 139.8 236 36.4
TAR623G0602 Trochodendron aralioides HOM05D001944 ORTHO05D002405 2.1e-31 139.8 129 50.4
TWI79G1706 Tripterygium wilfordii HOM05D001944 ORTHO05D002405 3.7e-31 139.0 136 48.5
Gohir.A08G199401 Gossypium hirsutum HOM05D001944 ORTHO05D002405 4.8e-31 138.7 187 43.9
Gorai.004G230500 Gossypium raimondii HOM05D001944 ORTHO05D002405 4.8e-31 138.7 188 43.6
Dinv01067 Davidia involucrata HOM05D001944 ORTHO05D002405 6.3e-31 138.3 135 49.6
CSS0012038 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D002405 1.1e-30 137.5 135 51.9
Gohir.D08G216700 Gossypium hirsutum HOM05D001944 ORTHO05D002405 1.1e-30 137.5 188 43.1
Phvul.011G081700 Phaseolus vulgaris HOM05D001944 ORTHO05D011318 1.1e-30 137.5 172 46.5
MD11G1140000 Malus domestica HOM05D001944 ORTHO05D002405 3.1e-30 136.0 141 48.2
arahy.Tifrunner.gnm1.ann1.ST0ZZW Arachis hypogaea HOM05D001944 ORTHO05D011318 6.9e-30 134.8 169 46.2
arahy.Tifrunner.gnm1.ann1.H0XM2A Arachis hypogaea HOM05D001944 ORTHO05D011318 9.0e-30 134.4 169 46.2
Atru.chr8.1406 Acer truncatum HOM05D001944 ORTHO05D002405 1.5e-29 133.7 108 60.2
Actinidia20443 Actinidia chinensis HOM05D001944 ORTHO05D014293 2.6e-29 132.9 144 45.8
Dinv32718 Davidia involucrata HOM05D001944 ORTHO05D002405 3.4e-29 132.5 135 49.6
Nn2g13727 Nelumbo nucifera HOM05D001944 ORTHO05D002405 3.4e-29 132.5 130 49.2
CANSAT54G1673 Cannabis sativa HOM05D001944 ORTHO05D002405 4.5e-29 132.1 135 47.4
Ciclev10027663m.g Citrus clementina HOM05D001944 ORTHO05D002405 4.5e-29 132.1 165 45.5
Aqoxy1G01204 Aquilegia oxysepala HOM05D001944 ORTHO05D002405 1.3e-28 130.6 137 46.0
Nn2g11517 Nelumbo nucifera HOM05D001944 ORTHO05D002405 1.1e-27 127.5 121 51.2
Eucgr.B02518 Eucalyptus grandis HOM05D001944 ORTHO05D002405 1.9e-27 126.7 123 45.5
ClCG03G002980 Citrullus lanatus HOM05D001944 ORTHO05D002405 4.2e-27 125.6 153 44.4
CsaV3_1G013920 Cucumis sativus L. HOM05D001944 ORTHO05D002405 1.6e-26 123.6 153 45.8
PGR102G2473 Punica granatum HOM05D001944 ORTHO05D002405 3.5e-26 122.5 143 44.1
FvH4_4g08540 Fragaria vesca HOM05D001944 ORTHO05D020674 4.6e-26 122.1 172 44.2
FAN12G2222 Fragaria x ananassa HOM05D001944 ORTHO05D020674 4.6e-26 122.1 172 44.2
Aqoxy7G00183 Aquilegia oxysepala HOM05D001944 ORTHO05D002405 7.9e-26 121.3 147 40.1
MELO3C004905.2 Cucumis melo HOM05D001944 ORTHO05D002405 1.3e-25 120.6 153 45.1
PSO339G1466 Papaver somniferum HOM05D001944 ORTHO05D002405 1.3e-25 120.6 131 43.5
Actinidia07154 Actinidia chinensis HOM05D001944 ORTHO05D002405 3.0e-25 119.4 135 43.7
PSO063G0478 Papaver somniferum HOM05D001944 ORTHO05D002405 3.9e-25 119.0 129 43.4
Oeu056301.1 Olea europaea HOM05D001944 ORTHO05D002405 6.7e-25 118.2 108 50.0
Rhsim01G0215200 Rhododendron simsii HOM05D001944 ORTHO05D014293 8.7e-25 117.9 162 42.6
Sc21g0003900 Simmondsia chinensis HOM05D001944 ORTHO05D002405 1.1e-24 117.5 120 48.3
Zm00001eb379660 Zea mays HOM05D001944 ORTHO05D002405 1.5e-24 117.1 154 40.3
FAN07G1966 Fragaria x ananassa HOM05D001944 ORTHO05D020674 2.5e-24 116.3 172 41.9
Hund01491 Selenicereus undatus HOM05D001944 ORTHO05D002405 3.3e-24 115.9 179 35.8
Cc01_g10870 Coffea canephora HOM05D001944 ORTHO05D002405 4.3e-24 115.5 111 51.4
vmacro03215 Vaccinium macrocarpon HOM05D001944 ORTHO05D002405 4.3e-24 115.5 138 42.8
Hma1.2p1_0058F.1_g032350 Hydrangea macrophylla HOM05D001944 ORTHO05D011318 9.7e-24 114.4 121 47.1
Rhsim13G0096400 Rhododendron simsii HOM05D001944 ORTHO05D002405 9.7e-24 114.4 141 43.3
Solyc06g010240.3 Solanum lycopersicum HOM05D001944 ORTHO05D002405 2.2e-23 113.2 133 43.6
Sopen06g005090 Solanum pennellii HOM05D001944 ORTHO05D002405 2.8e-23 112.8 129 45.0
RcHm_v2.0_Chr4g0405411 Rosa chinensis HOM05D001944 ORTHO05D020674 3.7e-23 112.5 124 47.6
THA.LOC104800593 Tarenaya hassleriana HOM05D001944 ORTHO05D002405 4.8e-23 112.1 152 41.4
AL1G18410 Arabidopsis lyrata HOM05D001944 ORTHO05D002405 1.8e-22 110.2 108 50.0
MSTRG.17786 Avicennia marina HOM05D001944 ORTHO05D002405 1.8e-22 110.2 110 48.2
GSVIVG01025216001 Vitis vinifera HOM05D001944 ORTHO05D002405 1.8e-22 110.2 107 49.5
C08p50200 Brassica napus HOM05D001944 ORTHO05D002405 2.4e-22 109.8 152 38.8
BolC8t52549H Brassica oleracea HOM05D001944 ORTHO05D002405 2.4e-22 109.8 152 38.8
BraA09t41943Z Brassica rapa HOM05D001944 ORTHO05D002405 4.1e-22 109.0 146 38.4
CAN.G171.6 Capsicum annuum HOM05D001944 ORTHO05D002405 5.3e-22 108.6 147 41.5
Sed0024562 Sechium edule HOM05D001944 ORTHO05D002405 9.0e-22 107.8 169 38.5
Sopen11g028320 Solanum pennellii HOM05D001944 ORTHO05D002405 9.0e-22 107.8 129 42.6
A09p66040 Brassica napus HOM05D001944 ORTHO05D002405 1.2e-21 107.5 146 38.4
AT1G08060 Arabidopsis thaliana HOM05D001944 ORTHO05D002405 2.0e-21 106.7 120 46.7
QL93p2013_0009 Quercus lobata HOM05D001944 ORTHO05D002405 2.6e-21 106.3 130 43.1
Lj2C1021G5 Lonicera japonica HOM05D001944 ORTHO05D002405 3.4e-21 105.9 126 43.7
Peaxi162Scf00948g00114 Petunia axillaris HOM05D001944 ORTHO05D002405 3.4e-21 105.9 133 40.6
Solyc11g069610.3 Solanum lycopersicum HOM05D001944 ORTHO05D002405 4.5e-21 105.5 129 42.6
VMungo1127G1376 Vigna mungo HOM05D001944 ORTHO05D011318 4.5e-21 105.5 216 35.2
Carub.0001s0741 Capsella rubella HOM05D001944 ORTHO05D002405 7.7e-21 104.8 133 42.1
Thhalv10006530m.g Eutrema salsugineum HOM05D001944 ORTHO05D002405 7.7e-21 104.8 187 33.7
HPP92_003460 Vanilla planifolia HOM05D001944 ORTHO05D002405 7.7e-21 104.8 137 39.4
Oeu013469.1 Olea europaea HOM05D001944 ORTHO05D002405 1.0e-20 104.4 95 50.5
Peaxi162Scf00167g00092 Petunia axillaris HOM05D001944 ORTHO05D002405 1.7e-20 103.6 136 42.6
ATR0048G049 Amborella trichopoda HOM05D001944 ORTHO05D002405 2.2e-20 103.2 113 46.0
Sp1g06700 Schrenkiella parvula HOM05D001944 ORTHO05D002405 2.9e-20 102.8 156 38.5
Migut.N02586 Erythranthe guttata HOM05D001944 ORTHO05D002405 5.0e-20 102.1 116 43.1
Nitab4.5_0000181g0180 Nicotiana tabacum HOM05D001944 ORTHO05D002405 8.5e-20 101.3 157 37.6
CAN.G631.45 Capsicum annuum HOM05D000550 ORTHO05D009781 1.1e-19 100.9 126 39.7
Os06g0102800 Oryza sativa ssp. japonica HOM05D001944 ORTHO05D002405 1.1e-19 100.9 107 43.9
MSTRG.12332 Avicennia marina HOM05D001944 ORTHO05D002405 1.4e-19 100.5 116 41.4
Thecc.05G062600 Theobroma cacao HOM05D001944 ORTHO05D002405 4.2e-19 99.0 98 52.0
BcaC05g24721 Brassica carinata HOM05D001944 ORTHO05D002405 5.5e-19 98.6 158 36.1
Nitab4.5_0000602g0020 Nicotiana tabacum HOM05D001944 ORTHO05D002405 7.2e-19 98.2 120 41.7
AUR62029226 Chenopodium quinoa HOM05D001944 ORTHO05D002405 1.2e-18 97.4 178 33.1
AUR62022774 Chenopodium quinoa HOM05D001944 ORTHO05D002405 1.6e-18 97.1 177 31.1
C05p06080 Brassica napus HOM05D001944 ORTHO05D002405 2.1e-18 96.7 158 33.5
Nitab4.5_0006532g0030 Nicotiana tabacum HOM05D001944 ORTHO05D002405 2.1e-18 96.7 120 41.7
Aa31LG9G1980 Aethionema arabicum HOM05D001944 ORTHO05D002405 2.7e-18 96.3 124 41.9
A06p05120 Brassica napus HOM05D001944 ORTHO05D002405 2.7e-18 96.3 158 34.2
BolC5t29368H Brassica oleracea HOM05D001944 ORTHO05D002405 3.6e-18 95.9 164 36.6
AUR62029227 Chenopodium quinoa HOM05D001944 ORTHO05D002405 3.6e-18 95.9 122 41.8
HPP92_003457 Vanilla planifolia HOM05D001944 ORTHO05D011318 4.6e-18 95.5 128 37.5
Ah.01g003060 Amaranthus hybridus HOM05D001944 ORTHO05D002405 7.9e-18 94.7 121 39.7
SHI21823 Sapria himalayana HOM05D001944 ORTHO05D002405 7.9e-18 94.7 203 33.5
BcaB02g06690 Brassica carinata HOM05D000550 ORTHO05D002405 1.8e-17 93.6 133 38.3
BraA06t23719Z Brassica rapa HOM05D001944 ORTHO05D002405 1.8e-17 93.6 164 34.8
BcaC07g42507 Brassica carinata HOM05D001944 ORTHO05D002405 2.3e-17 93.2 146 37.0
Medtr7g101465 Medicago truncatula HOM05D001944 ORTHO05D002405 2.3e-17 93.2 113 40.7
THA.LOC104826377 Tarenaya hassleriana HOM05D001944 ORTHO05D002405 3.9e-17 92.4 131 37.4
VMungo1383G2762 Vigna mungo HOM05D001944 ORTHO05D002405 3.9e-17 92.4 147 33.3
ECA238G1293 Erigeron canadensis HOM05D001944 ORTHO05D002405 6.7e-17 91.7 160 35.6
Zm00001eb229660 Zea mays HOM05D013792 ORTHO05D011318 8.8e-17 91.3 152 37.5
CARHR007860 Cardamine hirsuta HOM05D001944 ORTHO05D002405 1.5e-16 90.5 150 34.7
Lj1g0027821 Lotus japonicus HOM05D001944 ORTHO05D002405 2.5e-16 89.7 118 39.0
HanXRQChr01g0019291 Helianthus annuus HOM05D001944 ORTHO05D002405 3.3e-16 89.4 128 35.2
Lalb_Chr25g0289071 Lupinus albus HOM05D001944 ORTHO05D002405 3.3e-16 89.4 135 35.6
arahy.Tifrunner.gnm1.ann1.BHY38Y Arachis hypogaea HOM05D001944 ORTHO05D002405 4.3e-16 89.0 127 37.0
Duzib128G0909 Durio zibethinus HOM05D001944 ORTHO05D002405 4.3e-16 89.0 98 48.0
Lj1A201T35 Lonicera japonica HOM05D001944 ORTHO05D011318 7.4e-16 88.2 87 51.7
arahy.Tifrunner.gnm1.ann1.Q55GHJ Arachis hypogaea HOM05D001944 ORTHO05D002405 9.7e-16 87.8 127 37.0
HanXRQChr14g0452741 Helianthus annuus HOM05D001944 ORTHO05D002405 1.3e-15 87.4 108 39.8
HanXRQChr01g0019301 Helianthus annuus HOM05D001944 ORTHO05D002405 1.7e-15 87.0 111 36.0
SGA_v2.0_scaffold127G34027 Striga asiatica HOM05D001944 ORTHO05D002405 1.7e-15 87.0 116 40.5
Psat3g043480 Pisum sativum HOM05D001944 ORTHO05D002405 2.8e-15 86.3 114 39.5
Lsat_1_v5_gn_2_98901 Lactuca sativa HOM05D001944 ORTHO05D002405 3.7e-15 85.9 118 39.0
ECA248G3660 Erigeron canadensis HOM05D001944 ORTHO05D002405 1.4e-14 84.0 111 36.0
QL07p044103 Quercus lobata HOM05D001944 ORTHO05D002405 2.4e-14 83.2 183 30.6
Glyma.03G181800 Glycine max HOM05D001944 ORTHO05D002405 9.1e-14 81.3 125 34.4
TPR.G9371 Trifolium pratense HOM05D001944 ORTHO05D002405 4.5e-13 79.0 114 36.8
Zm00001eb036690 Zea mays HOM05D013792 ORTHO05D011318 1.0e-12 77.8 88 46.6
Zm00001eb241250 Zea mays HOM05D013792 ORTHO05D011318 1.0e-12 77.8 88 46.6
Zm00001eb399740 Zea mays HOM05D013792 ORTHO05D011318 1.0e-12 77.8 88 46.6
Zm00001eb124990 Zea mays HOM05D013792 ORTHO05D011318 1.7e-12 77.0 88 45.5
ECA248G2414 Erigeron canadensis HOM05D001944 ORTHO05D002405 2.9e-12 76.3 127 33.9
Zm00001eb269670 Zea mays HOM05D013792 ORTHO05D011318 5.0e-12 75.5 88 44.3
Actinidia03719 Actinidia chinensis HOM05D001944 ORTHO05D002405 6.5e-12 75.1 140 32.9
Zm00001eb109010 Zea mays HOM05D013792 ORTHO05D011318 6.5e-12 75.1 88 44.3
COL.COLO4_18304 Corchorus olitorius HOM05D001944 ORTHO05D002405 1.1e-11 74.3 85 48.2
EL10Ac9g22555 Beta vulgaris HOM05D001944 ORTHO05D002405 4.2e-11 72.4 194 27.3
Lsat_1_v5_gn_0_24581 Lactuca sativa HOM05D001944 ORTHO05D002405 4.2e-11 72.4 70 45.7
TPR.G24998 Trifolium pratense HOM05D001944 ORTHO05D011318 7.2e-11 71.6 67 55.2
HanXRQChr01g0019281 Helianthus annuus HOM05D001944 ORTHO05D002405 3.6e-10 69.3 96 33.3
SGA_v2.0_scaffold180G39633 Striga asiatica HOM05D001944 ORTHO05D002405 1.0e-09 67.8 119 31.9
Actinidia24118 Actinidia chinensis HOM05D001944 ORTHO05D002405 2.3e-09 66.6 90 40.0
Cpa.g.sc311.2 Carica papaya HOM05D001944 ORTHO05D002405 3.0e-09 66.2 98 31.6
Zm00001eb133310 Zea mays HOM05D013792 ORTHO05D011318 3.9e-09 65.9 88 43.2
SGA_v2.0_scaffold116G32253 Striga asiatica HOM05D001944 ORTHO05D002405 3.3e-08 62.8 129 31.0
SEGI_32392 Sequoiadendron giganteum HOM05D001944 ORTHO05D002405 4.8e-07 58.9 71 40.8
arahy.Tifrunner.gnm1.ann1.CEE0FY Arachis hypogaea HOM05D045472 ORTHO05D038816 1.4e-06 57.4 43 69.8
arahy.Tifrunner.gnm1.ann1.MN6YJ9 Arachis hypogaea HOM05D045472 ORTHO05D038816 1.4e-06 57.4 43 69.8
Nitab4.5_0006619g0010 Nicotiana tabacum HOM05D001944 ORTHO05D002405 5.3e-06 55.5 138 29.0
Zm00001eb020230 Zea mays HOM05D013792 ORTHO05D011318 7.0e-06 55.1 88 37.5


User provided reference genes

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